Wall clock time and date at job start Tue Mar 31 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35884 * 119.91532 * 2 1 4 4 O 1.34894 * 119.28235 * 0.02562 * 3 2 1 5 5 N 1.31340 * 121.43309 * 180.02562 * 3 2 1 6 6 C 1.33915 * 121.20305 * 0.02562 * 5 3 2 7 7 N 1.38224 * 120.14754 * 180.02562 * 6 5 3 8 8 C 1.38586 * 119.99913 * 4.42329 * 7 6 5 9 9 C 1.39656 * 119.42086 * 177.85275 * 8 7 6 10 10 C 1.36589 * 119.49342 * 179.97438 * 9 8 7 11 11 C 1.41313 * 118.40081 * 0.02562 * 10 9 8 12 12 C 1.41192 * 120.57465 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99751 * 338.20430 * 12 11 10 14 14 C 1.39884 * 119.99752 * 158.20148 * 12 11 10 15 15 N 1.30885 * 120.00195 * 324.52292 * 14 12 11 16 16 Si 1.86807 * 119.99747 * 144.52625 * 14 12 11 17 17 H 1.48503 * 109.46752 * 94.98866 * 16 14 12 18 18 H 1.48500 * 109.46990 * 214.98704 * 16 14 12 19 19 H 1.48495 * 109.46694 * 334.98927 * 16 14 12 20 20 C 1.40777 * 118.85285 * 359.97438 * 11 10 9 21 21 N 1.31467 * 120.36458 * 359.74838 * 20 11 10 22 22 C 1.38645 * 119.70092 * 0.27763 * 6 5 3 23 23 C 1.34936 * 119.92116 * 180.02562 * 2 1 3 24 24 O 1.22086 * 120.58060 * 359.96984 * 23 2 1 25 25 H 1.09002 * 109.47486 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47449 * 119.99743 * 1 2 3 27 27 H 1.09000 * 109.46883 * 239.99326 * 1 2 3 28 28 H 0.96696 * 116.99856 * 180.02562 * 4 3 2 29 29 H 0.97004 * 119.99866 * 184.70190 * 7 6 5 30 30 H 1.08002 * 120.25963 * 359.95578 * 9 8 7 31 31 H 1.08001 * 120.79841 * 180.02562 * 10 9 8 32 32 H 0.97003 * 119.99761 * 180.02562 * 15 14 12 33 33 H 1.07999 * 119.82290 * 179.97438 * 20 11 10 34 34 H 1.08007 * 120.66936 * 179.72174 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1427 1.1778 0.0000 4 8 1.4519 2.3364 0.0005 5 7 3.4556 1.2126 -0.0005 6 6 4.1795 0.0859 -0.0015 7 7 5.5603 0.1480 -0.0015 8 6 6.1988 1.3744 0.0921 9 6 7.5939 1.4199 0.1365 10 6 8.2248 2.6279 0.2283 11 6 7.4333 3.7976 0.2759 12 6 8.0375 5.0703 0.3703 13 1 9.0430 5.1636 0.7532 14 6 7.3337 6.2102 -0.0323 15 7 6.5186 6.1490 -1.0546 16 14 7.5572 7.8197 0.8892 17 1 8.5840 8.6444 0.2029 18 1 6.2683 8.5568 0.9177 19 1 7.9969 7.5373 2.2791 20 6 6.0320 3.6722 0.2265 21 7 5.4739 2.4855 0.1326 22 6 3.5376 -1.1430 -0.0079 23 6 2.1381 -1.1695 -0.0005 24 8 1.5369 -2.2321 -0.0004 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 -0.3633 -0.5139 0.8899 28 1 1.9672 3.1547 0.0001 29 1 6.0824 -0.6666 -0.0711 30 1 8.1697 0.5070 0.0989 31 1 9.3026 2.6877 0.2637 32 1 6.0309 6.9396 -1.3339 33 1 5.4120 4.5558 0.2622 34 1 4.1060 -2.0614 -0.0134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169997415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:55 Heat of formation + Delta-G solvation = 1.361090 kcal Electronic energy + Delta-G solvation = -22033.996873 eV Core-core repulsion = 18546.556637 eV Total energy + Delta-G solvation = -3487.440237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.69355 -40.54912 -39.49560 -38.44422 -36.68093 -35.80021 -34.58853 -32.87130 -31.55637 -30.54310 -28.34342 -26.79138 -25.30178 -24.51428 -23.53062 -22.52372 -20.30196 -19.74030 -19.37348 -18.10915 -17.95013 -17.70077 -17.65225 -16.99947 -16.02028 -15.65180 -15.51638 -15.33239 -15.28270 -15.05558 -14.53523 -14.19646 -14.13393 -13.94144 -13.41732 -13.38582 -13.28411 -13.11479 -12.62398 -12.44498 -11.94149 -11.68853 -11.30116 -11.02143 -10.96189 -10.54842 -10.21643 -9.54039 -9.39014 -8.90861 -8.58242 -6.18478 -0.13071 0.84078 0.97965 1.07607 1.15240 1.43613 1.52993 1.63654 2.11869 2.21425 2.61550 2.62389 2.83812 3.53146 3.78793 3.83071 4.12553 4.39013 4.41213 4.56131 4.57039 4.67139 4.74708 4.82334 4.91770 5.03971 5.18674 5.37741 5.43926 5.60485 5.73390 5.96037 6.13261 6.31290 6.37189 6.57715 6.79768 6.88102 6.93642 7.12075 7.91112 8.16659 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.004335 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.065422 B = 6457.650318 C = 7491.138312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.528 5.528 3 C 0.607 3.393 4 O -0.447 6.447 5 N -0.572 5.572 6 C 0.475 3.525 7 N -0.604 5.604 8 C 0.179 3.821 9 C -0.144 4.144 10 C -0.193 4.193 11 C 0.028 3.972 12 C -0.489 4.489 13 H 0.083 0.917 14 C 0.058 3.942 15 N -0.789 5.789 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.263 1.263 19 H -0.260 1.260 20 C 0.019 3.981 21 N -0.442 5.442 22 C -0.443 4.443 23 C 0.545 3.455 24 O -0.594 6.594 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.455 0.545 29 H 0.435 0.565 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.297 0.703 33 H 0.127 0.873 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -2.129 1.691 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.258 5.258 3 C 0.304 3.696 4 O -0.247 6.247 5 N -0.317 5.317 6 C 0.245 3.755 7 N -0.228 5.228 8 C -0.048 4.048 9 C -0.166 4.166 10 C -0.219 4.219 11 C 0.023 3.977 12 C -0.517 4.517 13 H 0.101 0.899 14 C -0.164 4.164 15 N -0.412 5.412 16 Si 0.788 3.212 17 H -0.187 1.187 18 H -0.187 1.187 19 H -0.184 1.184 20 C -0.145 4.145 21 N -0.153 5.153 22 C -0.474 4.474 23 C 0.352 3.648 24 O -0.480 6.480 25 H 0.136 0.864 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.320 0.680 29 H 0.275 0.725 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.985 -2.213 1.477 8.417 hybrid contribution 1.381 0.240 0.106 1.406 sum -6.604 -1.972 1.583 7.072 Atomic orbital electron populations 1.22240 0.75226 1.05992 1.04455 1.46338 1.11480 1.04846 1.63116 1.19981 0.84095 0.82221 0.83321 1.84087 1.38677 1.14576 1.87334 1.68627 1.01054 1.29302 1.32742 1.18194 0.84912 0.88126 0.84234 1.41426 1.01926 1.07411 1.71988 1.17981 0.88484 0.85706 1.12652 1.20913 0.92475 0.98963 1.04289 1.21087 0.99111 0.92142 1.09542 1.18748 0.93690 0.94157 0.91079 1.19630 1.02301 0.91169 1.38567 0.89850 1.26682 0.92523 1.04320 0.92835 1.69954 1.19869 1.33890 1.17460 0.85421 0.79322 0.76500 0.79973 1.18681 1.18697 1.18355 1.22316 0.92248 0.92559 1.07407 1.66903 1.39555 0.97490 1.11328 1.21663 0.92750 0.97652 1.35332 1.16400 0.88333 0.81717 0.78302 1.90875 1.71156 1.28510 1.57468 0.86391 0.89973 0.89963 0.67977 0.72466 0.84377 0.86320 0.89187 0.85559 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.30 10.08 127.77 1.29 2.59 16 2 N -0.53 -15.33 3.00 -791.37 -2.37 -17.70 16 3 C 0.61 17.62 8.61 179.75 1.55 19.16 16 4 O -0.45 -9.40 11.95 -81.62 -0.97 -10.37 16 5 N -0.57 -20.29 7.66 -310.65 -2.38 -22.67 16 6 C 0.47 16.83 7.44 132.75 0.99 17.82 16 7 N -0.60 -20.74 5.48 -190.27 -1.04 -21.78 16 8 C 0.18 7.42 7.44 133.23 0.99 8.41 16 9 C -0.14 -5.63 9.85 22.23 0.22 -5.41 16 10 C -0.19 -8.47 9.88 22.64 0.22 -8.25 16 11 C 0.03 1.38 5.58 -21.18 -0.12 1.26 16 12 C -0.49 -23.67 8.94 23.39 0.21 -23.46 16 13 H 0.08 3.90 8.04 -2.91 -0.02 3.88 16 14 C 0.06 2.60 4.69 85.23 0.40 3.00 16 15 N -0.79 -36.74 12.02 21.82 0.26 -36.48 16 16 Si 0.97 33.65 29.67 68.60 2.04 35.69 16 17 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 18 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 19 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 20 C 0.02 0.91 10.02 85.37 0.86 1.76 16 21 N -0.44 -20.17 7.62 -191.08 -1.46 -21.62 16 22 C -0.44 -14.98 9.92 22.79 0.23 -14.76 16 23 C 0.55 19.19 7.42 84.64 0.63 19.82 16 24 O -0.59 -23.82 17.17 -5.60 -0.10 -23.92 16 25 H 0.12 1.85 6.78 -2.39 -0.02 1.84 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.46 7.50 9.09 -74.06 -0.67 6.82 16 29 H 0.43 11.63 8.68 -92.71 -0.80 10.82 16 30 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 32 H 0.30 12.26 8.30 -92.71 -0.77 11.49 16 33 H 0.13 6.25 6.64 -2.91 -0.02 6.23 16 34 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -64.54 303.72 1.14 -63.40 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.29 Total: 33.53 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.46 Total: 21.93 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -6.99 Total: -120.26 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -1.07 Total: -34.29 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.04 Total: 35.69 kcal Total: -64.54 1.14 -63.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169997415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.763 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds