Wall clock time and date at job start Tue Mar 31 2020 02:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00401 * 2 1 4 4 O 1.21505 * 119.99778 * 0.02562 * 3 2 1 5 5 C 1.48251 * 119.99873 * 180.02562 * 3 2 1 6 6 C 1.39375 * 119.56154 * 179.97438 * 5 3 2 7 7 C 1.38376 * 119.19887 * 180.02562 * 6 5 3 8 8 C 1.39981 * 118.35417 * 0.02562 * 7 6 5 9 9 C 1.47818 * 120.47013 * 179.97438 * 8 7 6 10 10 O 1.21591 * 119.99770 * 347.27598 * 9 8 7 11 11 N 1.34778 * 119.99891 * 167.26286 * 9 8 7 12 12 C 1.36714 * 119.99464 * 174.37830 * 11 9 8 13 13 H 1.07996 * 119.99957 * 45.52878 * 12 11 9 14 14 C 1.39165 * 119.99628 * 225.80563 * 12 11 9 15 15 N 1.31290 * 120.00227 * 358.53867 * 14 12 11 16 16 Si 1.86801 * 120.00186 * 178.54536 * 14 12 11 17 17 H 1.48510 * 109.46635 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47440 * 119.99574 * 16 14 12 19 19 H 1.48493 * 109.47358 * 240.00149 * 16 14 12 20 20 C 1.46495 * 120.00393 * 354.38298 * 11 9 8 21 21 C 1.47206 * 109.46943 * 316.82927 * 20 11 9 22 22 N 5.04001 * 150.75303 * 103.20594 * 2 1 3 23 23 C 1.39844 * 119.06490 * 0.28042 * 8 7 6 24 24 N 1.31378 * 120.69906 * 359.39604 * 23 8 7 25 25 H 1.08999 * 109.47234 * 300.00064 * 1 2 3 26 26 H 1.08998 * 109.47324 * 59.99560 * 1 2 3 27 27 H 1.09003 * 109.47714 * 180.02562 * 1 2 3 28 28 H 0.97006 * 119.99524 * 180.02562 * 2 1 3 29 29 H 1.07994 * 120.40098 * 0.02562 * 6 5 3 30 30 H 1.08003 * 120.82120 * 180.02562 * 7 6 5 31 31 H 0.97000 * 120.00153 * 179.97438 * 15 14 12 32 32 H 1.09001 * 109.47405 * 76.82737 * 20 11 9 33 33 H 1.08998 * 109.47462 * 196.83522 * 20 11 9 34 34 H 1.07998 * 119.65106 * 179.72484 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5314 2.2194 0.0005 5 6 3.6214 1.1670 -0.0006 6 6 4.3092 2.3793 -0.0011 7 6 5.6929 2.3704 -0.0022 8 6 6.3498 1.1342 -0.0032 9 6 7.8266 1.0702 -0.0050 10 8 8.4782 2.0701 -0.2374 11 7 8.4508 -0.0965 0.2514 12 6 9.8103 -0.1837 0.1372 13 1 10.4381 0.5881 0.5573 14 6 10.3850 -1.2643 -0.5253 15 7 9.6231 -2.2144 -1.0157 16 14 12.2406 -1.3630 -0.7168 17 1 12.8675 -0.1762 -0.0812 18 1 12.7409 -2.5982 -0.0616 19 1 12.5884 -1.3925 -2.1601 20 6 7.6725 -1.2711 0.6522 21 6 6.6524 -0.8716 1.6355 22 7 5.8625 -0.5625 2.3973 23 6 5.5892 -0.0393 -0.0092 24 7 4.2764 0.0123 -0.0018 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.9499 -0.8401 -0.0004 29 1 3.7687 3.3142 -0.0007 30 1 6.2522 3.2943 -0.0022 31 1 10.0236 -2.9673 -1.4778 32 1 7.1849 -1.7000 -0.2233 33 1 8.3361 -2.0120 1.0979 34 1 6.0862 -0.9981 -0.0145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321530868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:17 Heat of formation + Delta-G solvation = 59.495059 kcal Electronic energy + Delta-G solvation = -22307.594310 eV Core-core repulsion = 18822.674951 eV Total energy + Delta-G solvation = -3484.919359 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98196 -39.57985 -38.05029 -36.71048 -34.83137 -34.70765 -32.44016 -32.20309 -31.04512 -28.15168 -27.43154 -25.56751 -23.85655 -23.27934 -20.92979 -20.10418 -18.43654 -18.10794 -17.48041 -16.73616 -16.09043 -15.68424 -15.40781 -15.21823 -15.07587 -14.37237 -14.16590 -14.07510 -13.72161 -13.31566 -13.11117 -12.82732 -12.54843 -12.41360 -12.31911 -12.20270 -11.77416 -11.58110 -11.39217 -11.09855 -10.93910 -10.47153 -10.21465 -9.66785 -9.58477 -9.24270 -9.20845 -8.87677 -8.70115 -7.93409 -6.72229 -4.42936 0.56595 1.38364 2.63104 2.89691 3.04571 3.10137 3.14288 3.16041 3.20524 3.63495 3.89357 4.10415 4.20622 4.36144 4.47518 4.81667 4.87300 5.03531 5.08628 5.15004 5.29361 5.34896 5.47772 5.61520 5.73065 5.93480 6.13682 6.24805 6.29077 6.31262 6.66714 7.25413 7.35111 7.81734 7.83381 7.90008 8.08050 8.15970 8.75949 8.88505 9.50019 10.38209 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.030987 B = 0.004323 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.389185 B = 6475.895297 C = 6895.176382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.718 5.718 3 C 0.576 3.424 4 O -0.538 6.538 5 C 0.078 3.922 6 C -0.122 4.122 7 C -0.034 4.034 8 C -0.144 4.144 9 C 0.509 3.491 10 O -0.552 6.552 11 N -0.427 5.427 12 C -0.314 4.314 13 H 0.099 0.901 14 C 0.048 3.952 15 N -0.876 5.876 16 Si 0.932 3.068 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.201 3.799 21 C 0.190 3.810 22 N -0.435 5.435 23 C 0.082 3.918 24 N -0.460 5.460 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.414 0.586 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.278 0.722 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 -2.505 0.170 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.369 5.369 3 C 0.362 3.638 4 O -0.414 6.414 5 C -0.061 4.061 6 C -0.144 4.144 7 C -0.061 4.061 8 C -0.150 4.150 9 C 0.297 3.703 10 O -0.434 6.434 11 N -0.148 5.148 12 C -0.442 4.442 13 H 0.116 0.884 14 C -0.159 4.159 15 N -0.511 5.511 16 Si 0.758 3.242 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.203 1.203 20 C 0.075 3.925 21 C -0.126 4.126 22 N -0.115 5.115 23 C -0.077 4.077 24 N -0.172 5.172 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.250 0.750 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -11.145 -1.772 1.096 11.338 hybrid contribution 1.768 -0.050 -0.457 1.826 sum -9.377 -1.821 0.639 9.574 Atomic orbital electron populations 1.21571 0.79415 1.02354 1.02306 1.45622 1.07578 1.09278 1.74455 1.17969 0.85985 0.83858 0.76001 1.90753 1.69074 1.31389 1.50216 1.21073 0.93677 0.90246 1.01074 1.21962 0.94260 0.99112 0.99032 1.21694 0.93330 0.98388 0.92687 1.21628 0.96749 0.94853 1.01795 1.18033 0.85172 0.85384 0.81692 1.90652 1.66310 1.34200 1.52209 1.43111 1.06898 1.06812 1.57938 1.19534 0.79403 1.09886 1.35377 0.88364 1.25653 1.01035 0.95571 0.93616 1.69678 1.36488 1.10198 1.34771 0.85766 0.81378 0.78593 0.78507 1.18901 1.20369 1.20271 1.19716 0.89602 0.91657 0.91495 1.30086 0.94309 0.94630 0.93535 1.81385 1.10818 1.06826 1.12512 1.24805 0.89380 1.00619 0.92945 1.67544 1.10123 1.27877 1.11662 0.92170 0.92115 0.90469 0.75009 0.83507 0.83204 0.91221 0.86436 0.85146 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 10.70 59.85 0.64 1.46 16 2 N -0.72 -8.95 5.70 -67.91 -0.39 -9.34 16 3 C 0.58 9.14 7.81 -12.14 -0.09 9.05 16 4 O -0.54 -9.62 16.31 5.36 0.09 -9.54 16 5 C 0.08 1.30 6.75 -82.93 -0.56 0.74 16 6 C -0.12 -2.01 9.62 -39.11 -0.38 -2.39 16 7 C -0.03 -0.61 9.71 -38.88 -0.38 -0.99 16 8 C -0.14 -2.80 5.10 -104.73 -0.53 -3.34 16 9 C 0.51 11.55 7.25 -12.34 -0.09 11.46 16 10 O -0.55 -14.17 16.42 5.29 0.09 -14.09 16 11 N -0.43 -9.43 2.79 -126.50 -0.35 -9.78 16 12 C -0.31 -7.50 8.75 -15.03 -0.13 -7.63 16 13 H 0.10 2.46 7.78 -52.49 -0.41 2.05 16 14 C 0.05 1.08 5.27 -17.44 -0.09 0.99 16 15 N -0.88 -19.46 11.69 55.51 0.65 -18.81 16 16 Si 0.93 18.14 29.55 -169.99 -5.02 13.12 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 19 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 20 C 0.20 3.63 4.17 -6.83 -0.03 3.60 16 21 C 0.19 3.39 10.23 -20.62 -0.21 3.18 16 22 N -0.43 -8.31 17.42 41.29 0.72 -7.59 16 23 C 0.08 1.45 6.63 -17.15 -0.11 1.33 16 24 N -0.46 -7.75 9.47 -9.46 -0.09 -7.84 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.41 4.71 8.15 -40.82 -0.33 4.38 16 29 H 0.15 2.16 7.63 -52.49 -0.40 1.76 16 30 H 0.15 2.50 7.78 -52.48 -0.41 2.09 16 31 H 0.28 5.84 8.31 -40.82 -0.34 5.50 16 32 H 0.12 1.97 6.21 -51.93 -0.32 1.65 16 33 H 0.13 2.31 7.38 -51.93 -0.38 1.92 16 34 H 0.20 3.36 2.55 -70.70 -0.18 3.18 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -29.17 302.88 -4.55 -33.73 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.84 Total: 8.13 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: -1.97 Total: 17.46 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.54 Total: -53.37 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.17 Total: -23.62 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.12 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.17 -4.55 -33.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321530868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.222 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds