Wall clock time and date at job start Tue Mar 31 2020 02:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99453 * 2 1 4 4 H 1.48508 * 109.46887 * 270.00112 * 3 2 1 5 5 H 1.48497 * 109.47285 * 30.00160 * 3 2 1 6 6 H 1.48495 * 109.46999 * 150.00506 * 3 2 1 7 7 C 1.37870 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00016 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00150 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00134 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99791 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99892 * 180.02562 * 11 10 9 14 14 N 1.46501 * 109.46696 * 180.02562 * 13 11 10 15 15 C 1.35854 * 119.70903 * 269.97538 * 14 13 11 16 16 N 1.29917 * 123.51169 * 180.02562 * 15 14 13 17 17 C 1.35437 * 121.51493 * 359.97438 * 16 15 14 18 18 C 1.39769 * 122.47986 * 179.97438 * 17 16 15 19 19 N 1.31539 * 120.05560 * 180.02562 * 18 17 16 20 20 C 1.32147 * 122.76256 * 359.97438 * 19 18 17 21 21 C 1.38038 * 121.38742 * 359.97438 * 20 19 18 22 22 C 1.39346 * 118.40314 * 359.77535 * 21 20 19 23 23 C 1.35473 * 119.70794 * 90.00125 * 14 13 11 24 24 O 1.21693 * 121.40038 * 359.95121 * 23 14 13 25 25 H 0.96990 * 120.00307 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47204 * 60.00080 * 9 7 2 27 27 H 1.09000 * 109.47338 * 300.00127 * 9 7 2 28 28 H 0.97005 * 119.99972 * 0.02562 * 10 9 7 29 29 H 1.09000 * 109.47195 * 60.00316 * 13 11 10 30 30 H 1.09000 * 109.47220 * 299.99520 * 13 11 10 31 31 H 1.08001 * 118.24371 * 0.02562 * 15 14 13 32 32 H 1.07998 * 119.97114 * 359.97113 * 18 17 16 33 33 H 1.08004 * 119.30530 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.80376 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0047 -1.1939 -0.0005 8 1 1.4648 -2.1293 -0.0014 9 6 3.5117 -1.1939 -0.0011 10 7 4.0001 -2.5751 -0.0022 11 6 5.3252 -2.8213 -0.0024 12 8 6.1132 -1.8994 -0.0011 13 6 5.8275 -4.2421 -0.0041 14 7 7.2925 -4.2419 -0.0033 15 6 7.9665 -4.2407 -1.1829 16 7 9.2628 -4.2410 -1.2684 17 6 10.0452 -4.2420 -0.1629 18 6 11.4412 -4.2428 -0.2313 19 7 12.1550 -4.2443 0.8736 20 6 11.6096 -4.2446 2.0773 21 6 10.2395 -4.2428 2.2458 22 6 9.4320 -4.2359 1.1102 23 6 7.9633 -4.2435 1.1737 24 8 7.3747 -4.2442 2.2388 25 1 -0.4850 0.8399 0.0004 26 1 3.8753 -0.6802 0.8888 27 1 3.8746 -0.6798 -0.8911 28 1 3.3698 -3.3124 -0.0029 29 1 5.4644 -4.7548 -0.8948 30 1 5.4642 -4.7570 0.8852 31 1 7.3939 -4.2394 -2.0987 32 1 11.9343 -4.2431 -1.1922 33 1 12.2493 -4.2455 2.9475 34 1 9.8038 -4.2427 3.2340 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338581914.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:13 Heat of formation + Delta-G solvation = -29.358534 kcal Electronic energy + Delta-G solvation = -21662.564425 eV Core-core repulsion = 18173.792085 eV Total energy + Delta-G solvation = -3488.772340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.99131 -40.96791 -40.03213 -38.84689 -36.33740 -35.77054 -34.47272 -33.44220 -31.53671 -30.90634 -28.98136 -26.34402 -25.85079 -24.05504 -23.66568 -21.84364 -20.37997 -20.08548 -19.48526 -18.73067 -18.15939 -17.38185 -17.01542 -16.83273 -16.54740 -16.46394 -15.81887 -15.76986 -15.39315 -15.07516 -15.05079 -14.77343 -14.49196 -14.36528 -13.89080 -13.61454 -13.26872 -13.11990 -12.72996 -11.99822 -11.99021 -11.86638 -11.67513 -11.32108 -11.07874 -10.94353 -10.85894 -10.71138 -10.04669 -9.31276 -8.42206 -6.48973 -0.73970 -0.51065 0.89152 1.08056 1.29413 1.33358 1.43959 1.51558 1.69507 2.24883 2.36047 2.78842 2.83852 2.93442 2.99719 3.39677 3.47640 3.57481 3.73140 3.83190 3.95843 4.12195 4.19375 4.50625 4.62688 4.73623 4.77511 4.97779 5.05201 5.20341 5.23257 5.40576 5.45217 6.03869 6.32056 6.52239 6.56668 6.70911 6.79439 7.11162 7.28316 8.72304 Molecular weight = 288.10amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.003381 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.289980 B = 8280.519725 C = 8380.266162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.933 3.067 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.232 3.768 10 N -0.694 5.694 11 C 0.485 3.515 12 O -0.594 6.594 13 C 0.084 3.916 14 N -0.527 5.527 15 C 0.394 3.606 16 N -0.527 5.527 17 C 0.093 3.907 18 C 0.124 3.876 19 N -0.464 5.464 20 C 0.077 3.923 21 C -0.098 4.098 22 C -0.184 4.184 23 C 0.543 3.457 24 O -0.534 6.534 25 H 0.272 0.728 26 H 0.004 0.996 27 H 0.017 0.983 28 H 0.415 0.585 29 H 0.192 0.808 30 H 0.138 0.862 31 H 0.251 0.749 32 H 0.195 0.805 33 H 0.199 0.801 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.263 -13.520 -2.366 23.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.109 3.891 10 N -0.344 5.344 11 C 0.271 3.729 12 O -0.476 6.476 13 C -0.041 4.041 14 N -0.247 5.247 15 C 0.108 3.892 16 N -0.248 5.248 17 C -0.019 4.019 18 C -0.039 4.039 19 N -0.173 5.173 20 C -0.075 4.075 21 C -0.119 4.119 22 C -0.196 4.196 23 C 0.336 3.664 24 O -0.410 6.410 25 H 0.082 0.918 26 H 0.022 0.978 27 H 0.035 0.965 28 H 0.252 0.748 29 H 0.209 0.791 30 H 0.156 0.844 31 H 0.267 0.733 32 H 0.212 0.788 33 H 0.215 0.785 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 20.714 -12.758 -2.340 24.440 hybrid contribution -1.881 0.894 1.101 2.355 sum 18.834 -11.864 -1.239 22.293 Atomic orbital electron populations 1.69966 1.07587 1.28592 1.50652 1.25543 0.95469 1.02465 0.93730 0.85930 0.79033 0.79801 0.79530 1.18613 1.20046 1.19140 1.21277 0.89781 0.94723 1.52482 0.91624 1.19097 0.93487 0.80934 0.95626 1.45894 1.06361 1.10030 1.72113 1.21481 0.82674 0.92496 0.76228 1.90706 1.56440 1.47971 1.52477 1.22099 0.77134 0.93624 1.11281 1.46312 1.09312 1.61701 1.07405 1.25812 0.89457 0.84117 0.89792 1.68644 1.03210 1.24489 1.28423 1.20111 0.96753 0.97131 0.87916 1.23126 0.87295 0.95036 0.98487 1.67534 1.41157 1.09461 0.99120 1.23236 0.92105 0.96259 0.95895 1.22250 0.94954 0.95806 0.98895 1.21034 0.92788 1.08798 0.97012 1.18603 0.88120 0.76003 0.83684 1.90853 1.71116 1.49573 1.29418 0.91834 0.97780 0.96462 0.74778 0.79051 0.84416 0.73325 0.78778 0.78461 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.96 21.45 0.30 -53.87 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.93 43.27 27.47 68.60 1.88 45.16 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.27 -12.50 6.54 99.48 0.65 -11.85 16 7 C -0.54 -28.67 9.83 25.60 0.25 -28.42 16 8 H 0.07 3.58 7.84 -2.91 -0.02 3.55 16 9 C 0.23 10.78 4.50 85.63 0.38 11.17 16 10 N -0.69 -24.27 5.55 -466.79 -2.59 -26.86 16 11 C 0.49 15.55 7.90 87.66 0.69 16.24 16 12 O -0.59 -25.07 16.43 -3.03 -0.05 -25.12 16 13 C 0.08 1.57 5.85 85.63 0.50 2.07 16 14 N -0.53 -11.85 2.10 -651.74 -1.37 -13.22 16 15 C 0.39 6.94 11.40 180.17 2.05 8.99 16 16 N -0.53 -11.16 10.40 -191.88 -1.99 -13.16 16 17 C 0.09 2.20 6.65 39.71 0.26 2.46 16 18 C 0.12 2.53 11.24 85.11 0.96 3.49 16 19 N -0.46 -9.60 10.29 -194.75 -2.00 -11.61 16 20 C 0.08 1.41 11.16 84.60 0.94 2.35 16 21 C -0.10 -2.17 9.78 22.49 0.22 -1.95 16 22 C -0.18 -4.83 5.90 -19.96 -0.12 -4.95 16 23 C 0.54 15.83 7.67 86.43 0.66 16.50 16 24 O -0.53 -18.65 16.45 -4.33 -0.07 -18.72 16 25 H 0.27 14.85 8.31 -92.72 -0.77 14.08 16 26 H 0.00 0.22 7.20 -2.39 -0.02 0.20 16 27 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 28 H 0.42 11.82 8.32 -92.70 -0.77 11.05 16 29 H 0.19 1.15 7.99 -2.39 -0.02 1.13 16 30 H 0.14 2.48 7.47 -2.39 -0.02 2.46 16 31 H 0.25 1.75 7.99 -2.91 -0.02 1.73 16 32 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.15 3.14 7.93 -2.91 -0.02 3.11 16 Total: -1.00 -80.45 307.47 1.72 -78.73 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.33 Total: 8.69 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 7.28 Total: 29.99 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -7.66 Total: -118.71 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.12 Total: -43.84 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Total: -80.45 1.72 -78.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338581914.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.369 kcal (2) G-P(sol) polarization free energy of solvation -80.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds