Wall clock time and date at job start Tue Mar 31 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 138.86787 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46956 * 89.99765 * 11 9 7 13 13 H 1.48497 * 109.47226 * 210.00189 * 11 9 7 14 14 H 1.48501 * 109.47027 * 329.99834 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 N 1.46491 * 109.46957 * 179.72354 * 17 15 5 19 19 C 1.34852 * 125.67286 * 124.71844 * 18 17 15 20 20 C 1.36984 * 106.03420 * 179.88348 * 19 18 17 21 21 C 1.43197 * 126.97898 * 180.11055 * 20 19 18 22 22 N 9.76408 * 129.19414 * 47.30663 * 2 1 3 23 23 N 1.34811 * 106.03750 * 0.36737 * 20 19 18 24 24 N 1.28610 * 108.67715 * 359.76247 * 23 20 19 25 25 H 1.08997 * 109.47542 * 18.86519 * 3 2 1 26 26 H 1.09004 * 109.47171 * 258.86569 * 3 2 1 27 27 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 28 28 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 29 29 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 30 30 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 31 31 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 33 33 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 34 34 H 1.07996 * 126.98234 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0874 -0.9489 5 7 4.5826 1.0876 -0.9493 6 6 5.3151 1.9222 0.0062 7 6 5.5658 3.2786 -0.6007 8 1 5.2143 3.4973 -1.5982 9 6 6.2441 4.2405 0.1175 10 7 6.6727 3.9742 1.3320 11 14 6.5543 5.9221 -0.6345 12 1 5.4243 6.8277 -0.3052 13 1 7.8150 6.4843 -0.0870 14 1 6.6701 5.7912 -2.1092 15 6 5.2563 0.3200 -1.8287 16 8 6.4692 0.3200 -1.8287 17 6 4.5027 -0.5338 -2.8157 18 7 5.4546 -1.2619 -3.6582 19 6 5.4916 -2.5992 -3.8280 20 6 6.5275 -2.8425 -4.6907 21 6 6.9615 -4.1172 -5.1778 22 7 7.3064 -5.1312 -5.5619 23 7 7.0589 -1.6387 -4.9836 24 7 6.3975 -0.7325 -4.3546 25 1 2.9718 -0.9716 -0.3323 26 1 2.9712 0.1993 1.0084 27 1 2.7538 2.0596 -0.6166 28 1 2.7543 0.8887 -1.9572 29 1 4.7263 2.0348 0.9165 30 1 6.2677 1.4496 0.2457 31 1 7.1494 4.6510 1.8374 32 1 3.8763 -1.2449 -2.2771 33 1 3.8758 0.1015 -3.4413 34 1 4.8361 -3.3297 -3.3774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652016288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:20 Heat of formation + Delta-G solvation = 135.097376 kcal Electronic energy + Delta-G solvation = -21473.873180 eV Core-core repulsion = 18024.524935 eV Total energy + Delta-G solvation = -3449.348245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.59650 -39.65872 -37.13174 -36.78689 -35.61875 -34.76761 -33.00878 -31.64644 -31.12299 -29.52905 -27.07253 -24.50991 -24.33652 -23.50429 -22.10873 -19.87249 -18.59480 -18.01832 -17.46782 -16.95033 -16.60783 -16.09609 -15.62175 -15.12603 -15.05609 -14.90856 -14.26606 -13.96855 -13.76144 -13.59595 -13.25531 -13.14670 -12.88303 -12.68905 -12.55053 -12.22686 -11.99684 -11.86647 -11.45527 -11.23492 -11.18793 -11.04185 -10.74888 -10.66090 -10.30547 -9.87154 -9.60644 -9.40798 -8.57912 -8.16562 -6.20305 -4.25772 0.99020 1.71205 1.85849 2.31468 2.50747 2.61603 2.77377 3.22974 3.24988 3.26327 3.31677 3.36961 3.42595 3.82855 4.18972 4.29294 4.33101 4.45369 4.59836 4.68719 4.79143 4.85610 5.12174 5.16559 5.30140 5.43268 5.56031 5.80075 6.07559 6.63171 7.07419 7.19679 7.20005 7.37905 7.74317 7.86861 8.01205 8.17326 8.43975 8.78119 9.40863 10.87921 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.011996 B = 0.004696 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.510765 B = 5961.219267 C = 7835.154604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.213 3.787 3 C -0.051 4.051 4 C 0.110 3.890 5 N -0.588 5.588 6 C 0.247 3.753 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 C 0.495 3.505 16 O -0.498 6.498 17 C 0.084 3.916 18 N -0.268 5.268 19 C 0.016 3.984 20 C 0.031 3.969 21 C 0.308 3.692 22 N -0.399 5.399 23 N -0.229 5.229 24 N -0.024 5.024 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 -10.810 -4.499 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.105 4.105 3 C -0.092 4.092 4 C -0.016 4.016 5 N -0.320 5.320 6 C 0.129 3.871 7 C -0.573 4.573 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.197 1.197 15 C 0.277 3.723 16 O -0.371 6.371 17 C -0.041 4.041 18 N -0.058 5.058 19 C -0.140 4.140 20 C -0.107 4.107 21 C -0.011 4.011 22 N -0.077 5.077 23 N -0.099 5.099 24 N -0.005 5.005 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.005 -10.892 -5.292 15.091 hybrid contribution -0.179 0.542 0.344 0.667 sum -9.183 -10.350 -4.948 14.695 Atomic orbital electron populations 1.81251 1.13015 1.08565 1.08736 1.29022 0.95022 0.93254 0.93239 1.19883 0.81553 1.02405 1.05361 1.21444 0.81813 0.99804 0.98557 1.48206 1.05024 1.43112 1.35690 1.19452 0.92618 0.88833 0.86236 1.21366 1.37297 0.96869 1.01743 0.92159 1.24906 0.95036 0.99047 0.94812 1.69903 1.37919 1.34810 1.10413 0.86496 0.77778 0.83538 0.79675 1.20609 1.21042 1.19702 1.19855 0.88430 0.81639 0.82329 1.90855 1.12845 1.64525 1.68911 1.22364 0.89911 0.98031 0.93761 1.46768 1.22751 1.05411 1.30838 1.23536 1.02034 0.86305 1.02136 1.16764 0.99662 0.89274 1.05046 1.23600 0.93469 0.90790 0.93192 1.81368 1.07320 1.10725 1.08289 1.75688 1.20493 0.95861 1.17842 1.78577 0.97132 1.20535 1.04247 0.87716 0.86111 0.87918 0.90559 0.94255 0.93359 0.92513 0.84717 0.84847 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.25 18.54 42.15 0.78 -4.47 16 2 C 0.21 1.87 15.43 -20.76 -0.32 1.55 16 3 C -0.05 -0.33 6.03 -29.52 -0.18 -0.50 16 4 C 0.11 1.00 5.17 -4.04 -0.02 0.98 16 5 N -0.59 -8.54 2.46 -175.06 -0.43 -8.97 16 6 C 0.25 5.16 5.16 -5.20 -0.03 5.13 16 7 C -0.53 -13.17 9.39 -34.44 -0.32 -13.50 16 8 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.24 13.29 55.43 0.74 -23.51 16 11 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.49 7.23 7.68 -10.98 -0.08 7.14 16 16 O -0.50 -10.28 15.25 5.55 0.08 -10.19 16 17 C 0.08 0.69 5.48 -5.20 -0.03 0.66 16 18 N -0.27 -2.93 3.18 -62.13 -0.20 -3.13 16 19 C 0.02 0.13 11.52 -16.68 -0.19 -0.06 16 20 C 0.03 0.36 7.00 -85.09 -0.60 -0.24 16 21 C 0.31 3.60 15.92 -22.42 -0.36 3.24 16 22 N -0.40 -5.24 18.55 41.91 0.78 -4.47 16 23 N -0.23 -3.46 12.46 32.01 0.40 -3.06 16 24 N -0.02 -0.37 12.08 60.35 0.73 0.36 16 25 H 0.10 0.36 7.25 -51.93 -0.38 -0.02 16 26 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16 28 H 0.08 0.45 6.43 -51.93 -0.33 0.12 16 29 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.05 1.19 7.42 -51.93 -0.39 0.80 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.14 0.37 7.13 -51.93 -0.37 0.00 16 33 H 0.13 0.78 7.40 -51.93 -0.38 0.40 16 34 H 0.21 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -35.82 324.99 -2.55 -38.36 By element: Atomic # 1 Polarization: -4.11 SS G_CDS: -3.08 Total: -7.19 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -2.22 Total: 6.00 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 2.80 Total: -47.24 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.82 -2.55 -38.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652016288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.462 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds