Wall clock time and date at job start Tue Mar 31 2020 03:35:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.52173 * 127.33284 * 2 1
4 4 C 1.53005 * 110.35506 * 298.54815 * 3 2 1
5 5 C 1.52999 * 110.35868 * 60.84767 * 3 2 1
6 6 C 1.55953 * 104.87418 * 179.69818 * 3 2 1
7 7 H 1.08997 * 116.10638 * 200.28198 * 6 3 2
8 8 C 1.55984 * 104.31058 * 71.21250 * 6 3 2
9 9 C 1.58527 * 103.69885 * 290.49214 * 8 6 3
10 10 C 1.53517 * 127.32784 * 179.97438 * 2 1 3
11 11 C 1.50711 * 115.84382 * 340.28348 * 10 2 1
12 12 O 1.21288 * 119.99861 * 252.09379 * 11 10 2
13 13 N 1.34776 * 119.99872 * 72.08601 * 11 10 2
14 14 C 1.37100 * 119.99655 * 176.24609 * 13 11 10
15 15 H 1.07994 * 120.00607 * 3.51745 * 14 13 11
16 16 C 1.38945 * 119.99491 * 183.51822 * 14 13 11
17 17 N 1.31415 * 120.00561 * 51.76014 * 16 14 13
18 18 Si 1.86799 * 119.99822 * 232.02878 * 16 14 13
19 19 H 1.48501 * 109.47426 * 179.72800 * 18 16 14
20 20 H 1.48502 * 109.47210 * 299.72680 * 18 16 14
21 21 H 1.48506 * 109.47032 * 59.72758 * 18 16 14
22 22 C 1.46504 * 119.99992 * 356.25248 * 13 11 10
23 23 C 1.47202 * 109.47133 * 92.76189 * 22 13 11
24 24 N 4.93653 * 96.08771 * 225.95853 * 2 1 3
25 25 C 1.56924 * 100.84565 * 214.04458 * 10 2 1
26 26 H 1.08007 * 120.00376 * 185.68098 * 1 2 3
27 27 H 1.07999 * 120.00031 * 5.66964 * 1 2 3
28 28 H 1.08995 * 109.47021 * 69.56887 * 4 3 2
29 29 H 1.09006 * 109.46676 * 189.56845 * 4 3 2
30 30 H 1.09001 * 109.46864 * 309.56634 * 4 3 2
31 31 H 1.08997 * 109.47181 * 58.55253 * 5 3 2
32 32 H 1.09004 * 109.46990 * 178.54951 * 5 3 2
33 33 H 1.08999 * 109.47180 * 298.54820 * 5 3 2
34 34 H 1.08998 * 110.43174 * 49.54318 * 8 6 3
35 35 H 1.08998 * 110.43814 * 172.04890 * 8 6 3
36 36 H 1.09000 * 111.22944 * 240.93704 * 9 8 6
37 37 H 1.08998 * 110.28242 * 118.02124 * 9 8 6
38 38 H 0.97003 * 119.99266 * 6.97605 * 17 16 14
39 39 H 1.08992 * 109.46791 * 212.76529 * 22 13 11
40 40 H 1.09004 * 109.46985 * 332.76269 * 22 13 11
41 41 H 1.09001 * 112.09086 * 62.49756 * 25 10 2
42 42 H 1.09000 * 112.09386 * 189.18315 * 25 10 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.2328 1.2100 0.0000
4 6 2.0105 2.0489 -1.2601
5 6 2.0000 2.0569 1.2527
6 6 3.6741 0.6142 0.0079
7 1 4.4666 1.2805 0.3484
8 6 3.8504 0.0125 -1.4203
9 6 2.8704 -1.2336 -1.4264
10 6 2.2409 -1.2207 0.0005
11 6 1.6239 -2.5172 0.4587
12 8 1.9254 -2.9848 1.5365
13 7 0.7370 -3.1569 -0.3291
14 6 0.2342 -4.3739 0.0526
15 1 0.5045 -4.7937 1.0102
16 6 -0.6234 -5.0672 -0.7927
17 7 -0.2809 -5.2837 -2.0428
18 14 -2.2665 -5.6851 -0.1541
19 1 -2.9916 -6.3824 -1.2465
20 1 -2.0378 -6.6288 0.9694
21 1 -3.0765 -4.5352 0.3224
22 6 0.3105 -2.5519 -1.5934
23 6 1.1701 -3.0384 -2.6848
24 7 1.8335 -3.4124 -3.5285
25 6 3.4354 -0.6808 0.8631
26 1 -0.5401 -0.9307 0.0926
27 1 -0.5400 0.9307 -0.0924
28 1 1.0337 2.5298 -1.2087
29 1 2.7872 2.8104 -1.3313
30 1 2.0523 1.4040 -2.1379
31 1 2.1765 1.4492 2.1402
32 1 2.6854 2.9046 1.2507
33 1 0.9725 2.4206 1.2597
34 1 3.5626 0.7410 -2.1783
35 1 4.8803 -0.3101 -1.5729
36 1 3.4148 -2.1630 -1.5934
37 1 2.0979 -1.1030 -2.1841
38 1 0.6094 -5.0503 -2.3491
39 1 -0.7246 -2.8262 -1.7963
40 1 0.3919 -1.4672 -1.5228
41 1 3.1287 -0.4351 1.8799
42 1 4.2894 -1.3580 0.8503
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000001448530.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:28
Heat of formation + Delta-G solvation = 43.040240 kcal
Electronic energy + Delta-G solvation = -24742.640373 eV
Core-core repulsion = 21496.380918 eV
Total energy + Delta-G solvation = -3246.259455 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 288.158 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.13831 -38.35865 -36.25334 -34.57411 -33.41224 -32.57876 -31.34736 -28.95909
-27.62193 -27.16004 -26.49584 -24.51838 -22.96282 -21.31576 -20.35157 -18.67032
-18.48832 -17.42067 -16.52923 -15.98508 -15.69638 -15.14851 -14.67417 -14.27587
-13.95169 -13.70675 -13.57428 -13.35372 -12.87718 -12.60654 -12.45698 -12.33874
-12.19451 -12.01992 -11.90131 -11.70901 -11.44818 -11.37099 -11.13565 -10.90264
-10.86497 -10.73690 -10.56591 -10.43333 -10.34704 -10.22255 -10.11337 -9.78322
-9.05425 -8.77345 -8.50561 -8.19648 -6.99160 -3.82369 2.43666 3.10948
3.26413 3.33902 3.44255 3.52858 3.63486 4.12653 4.41775 4.50248
4.52859 4.67915 4.77664 4.89764 4.96206 5.13313 5.17460 5.29579
5.38306 5.50452 5.57091 5.59114 5.63477 5.69444 5.76466 5.84321
5.88945 5.96370 6.01519 6.02094 6.08201 6.11641 6.15547 6.26707
6.31490 6.39302 6.45120 6.52725 6.78132 7.09545 7.64193 8.08936
8.18392 8.29520 8.83044 9.24300 9.74467 10.23441
Molecular weight = 288.16amu
Principal moments of inertia in cm(-1)
A = 0.021791 B = 0.006396 C = 0.005946
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.619702 B = 4376.774076 C = 4707.631766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.096 4.096
3 C -0.032 4.032
4 C -0.140 4.140
5 C -0.134 4.134
6 C -0.097 4.097
7 H 0.100 0.900
8 C -0.125 4.125
9 C -0.112 4.112
10 C -0.058 4.058
11 C 0.469 3.531
12 O -0.568 6.568
13 N -0.427 5.427
14 C -0.461 4.461
15 H 0.109 0.891
16 C 0.038 3.962
17 N -0.824 5.824
18 Si 1.041 2.959
19 H -0.281 1.281
20 H -0.279 1.279
21 H -0.279 1.279
22 C 0.178 3.822
23 C 0.211 3.789
24 N -0.445 5.445
25 C -0.089 4.089
26 H 0.114 0.886
27 H 0.104 0.896
28 H 0.054 0.946
29 H 0.055 0.945
30 H 0.063 0.937
31 H 0.059 0.941
32 H 0.054 0.946
33 H 0.055 0.945
34 H 0.076 0.924
35 H 0.062 0.938
36 H 0.068 0.932
37 H 0.068 0.932
38 H 0.285 0.715
39 H 0.116 0.884
40 H 0.117 0.883
41 H 0.075 0.925
42 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.836 15.294 0.833 15.426
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C -0.097 4.097
3 C -0.032 4.032
4 C -0.197 4.197
5 C -0.191 4.191
6 C -0.115 4.115
7 H 0.118 0.882
8 C -0.162 4.162
9 C -0.150 4.150
10 C -0.062 4.062
11 C 0.259 3.741
12 O -0.451 6.451
13 N -0.146 5.146
14 C -0.585 4.585
15 H 0.127 0.873
16 C -0.177 4.177
17 N -0.456 5.456
18 Si 0.866 3.134
19 H -0.207 1.207
20 H -0.205 1.205
21 H -0.205 1.205
22 C 0.050 3.950
23 C -0.108 4.108
24 N -0.125 5.125
25 C -0.126 4.126
26 H 0.132 0.868
27 H 0.122 0.878
28 H 0.073 0.927
29 H 0.074 0.926
30 H 0.082 0.918
31 H 0.078 0.922
32 H 0.073 0.927
33 H 0.074 0.926
34 H 0.094 0.906
35 H 0.081 0.919
36 H 0.086 0.914
37 H 0.086 0.914
38 H 0.098 0.902
39 H 0.134 0.866
40 H 0.134 0.866
41 H 0.093 0.907
42 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 1.584 13.733 -0.373 13.829
hybrid contribution 1.087 0.624 0.578 1.380
sum 2.670 14.357 0.206 14.605
Atomic orbital electron populations
1.23385 0.94321 1.02731 1.02566 1.22456 0.93971 0.94330 0.98911
1.20661 0.93883 0.93030 0.95661 1.21945 1.01282 0.99215 0.97219
1.21794 1.01335 0.98910 0.97068 1.23640 0.95555 0.96547 0.95735
0.88170 1.23452 0.99039 0.96891 0.96836 1.23473 0.98322 0.98356
0.94808 1.22118 0.95475 0.92208 0.96398 1.19076 0.82039 0.86286
0.86725 1.90524 1.63009 1.68833 1.22746 1.43691 1.37906 1.18473
1.14579 1.20166 1.31756 0.99153 1.07400 0.87341 1.26278 1.03213
0.94868 0.93320 1.70904 1.23402 1.31382 1.19879 0.83964 0.75932
0.77110 0.76412 1.20669 1.20494 1.20525 1.19560 0.96816 0.98710
0.79869 1.29909 0.93970 0.92564 0.94311 1.81062 1.10817 1.09214
1.11415 1.23254 0.96347 0.95093 0.97948 0.86791 0.87801 0.92731
0.92564 0.91801 0.92215 0.92691 0.92640 0.90577 0.91926 0.91368
0.91368 0.90173 0.86602 0.86597 0.90655 0.90880
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.77 12.17 29.02 0.35 -2.42 16
2 C -0.10 -1.43 3.36 -98.92 -0.33 -1.76 16
3 C -0.03 -0.39 0.62 -153.35 -0.10 -0.48 16
4 C -0.14 -1.42 7.59 37.16 0.28 -1.14 16
5 C -0.13 -1.44 8.51 37.16 0.32 -1.12 16
6 C -0.10 -1.19 4.33 -85.27 -0.37 -1.56 16
7 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16
8 C -0.12 -1.61 6.03 -22.08 -0.13 -1.74 16
9 C -0.11 -1.85 3.99 -22.09 -0.09 -1.94 16
10 C -0.06 -1.04 0.85 -151.68 -0.13 -1.17 16
11 C 0.47 10.92 6.49 -10.98 -0.07 10.85 16
12 O -0.57 -15.43 16.12 5.55 0.09 -15.34 16
13 N -0.43 -10.09 2.37 -117.93 -0.28 -10.37 16
14 C -0.46 -12.27 9.15 -14.93 -0.14 -12.41 16
15 H 0.11 3.17 7.39 -52.49 -0.39 2.78 16
16 C 0.04 0.96 4.12 -17.47 -0.07 0.88 16
17 N -0.82 -21.92 12.36 55.50 0.69 -21.23 16
18 Si 1.04 22.11 30.06 -169.99 -5.11 17.00 16
19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16
21 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16
22 C 0.18 3.58 3.78 -6.83 -0.03 3.55 16
23 C 0.21 4.51 9.25 -20.74 -0.19 4.32 16
24 N -0.45 -10.00 18.20 42.18 0.77 -9.23 16
25 C -0.09 -1.41 5.64 -22.43 -0.13 -1.54 16
26 H 0.11 1.86 6.22 -52.48 -0.33 1.53 16
27 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16
28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
30 H 0.06 0.69 6.12 -51.93 -0.32 0.37 16
31 H 0.06 0.70 7.17 -51.93 -0.37 0.33 16
32 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16
34 H 0.08 0.87 5.44 -51.93 -0.28 0.59 16
35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
36 H 0.07 1.30 7.82 -51.93 -0.41 0.89 16
37 H 0.07 1.11 4.89 -51.93 -0.25 0.86 16
38 H 0.29 7.78 5.49 -40.82 -0.22 7.55 16
39 H 0.12 2.34 6.94 -51.93 -0.36 1.97 16
40 H 0.12 1.96 2.94 -51.93 -0.15 1.80 16
41 H 0.07 1.23 7.20 -51.93 -0.37 0.85 16
42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
LS Contribution 318.97 15.07 4.81 4.81
Total: -1.00 -30.38 318.97 -5.49 -35.87
By element:
Atomic # 1 Polarization: 11.80 SS G_CDS: -5.64 Total: 6.16 kcal
Atomic # 6 Polarization: -6.85 SS G_CDS: -0.82 Total: -7.67 kcal
Atomic # 7 Polarization: -42.01 SS G_CDS: 1.17 Total: -40.84 kcal
Atomic # 8 Polarization: -15.43 SS G_CDS: 0.09 Total: -15.34 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.11 Total: 17.00 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -30.38 -5.49 -35.87 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000001448530.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.911 kcal
(2) G-P(sol) polarization free energy of solvation -30.377 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.534 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.871 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.040 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds