Wall clock time and date at job start Tue Mar 31 2020 03:35:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.52173 * 127.33284 * 2 1
4 4 C 1.53005 * 110.35506 * 298.54815 * 3 2 1
5 5 C 1.52999 * 110.35868 * 60.84767 * 3 2 1
6 6 C 1.55953 * 104.87418 * 179.69818 * 3 2 1
7 7 H 1.08997 * 116.10638 * 200.28198 * 6 3 2
8 8 C 1.55984 * 104.31058 * 71.21250 * 6 3 2
9 9 C 1.58527 * 103.69885 * 290.49214 * 8 6 3
10 10 C 1.53517 * 127.32784 * 179.97438 * 2 1 3
11 11 C 1.50711 * 115.84382 * 340.28348 * 10 2 1
12 12 O 1.21288 * 119.99861 * 252.09379 * 11 10 2
13 13 N 1.34776 * 119.99872 * 72.08601 * 11 10 2
14 14 C 1.37100 * 119.99655 * 176.24609 * 13 11 10
15 15 H 1.07994 * 120.00607 * 3.51745 * 14 13 11
16 16 C 1.38945 * 119.99491 * 183.51822 * 14 13 11
17 17 N 1.31415 * 120.00561 * 51.76014 * 16 14 13
18 18 Si 1.86799 * 119.99822 * 232.02878 * 16 14 13
19 19 H 1.48501 * 109.47426 * 179.72800 * 18 16 14
20 20 H 1.48502 * 109.47210 * 299.72680 * 18 16 14
21 21 H 1.48506 * 109.47032 * 59.72758 * 18 16 14
22 22 C 1.46504 * 119.99992 * 356.25248 * 13 11 10
23 23 C 1.47202 * 109.47133 * 92.76189 * 22 13 11
24 24 N 4.93653 * 96.08771 * 225.95853 * 2 1 3
25 25 C 1.56924 * 100.84565 * 214.04458 * 10 2 1
26 26 H 1.08007 * 120.00376 * 185.68098 * 1 2 3
27 27 H 1.07999 * 120.00031 * 5.66964 * 1 2 3
28 28 H 1.08995 * 109.47021 * 69.56887 * 4 3 2
29 29 H 1.09006 * 109.46676 * 189.56845 * 4 3 2
30 30 H 1.09001 * 109.46864 * 309.56634 * 4 3 2
31 31 H 1.08997 * 109.47181 * 58.55253 * 5 3 2
32 32 H 1.09004 * 109.46990 * 178.54951 * 5 3 2
33 33 H 1.08999 * 109.47180 * 298.54820 * 5 3 2
34 34 H 1.08998 * 110.43174 * 49.54318 * 8 6 3
35 35 H 1.08998 * 110.43814 * 172.04890 * 8 6 3
36 36 H 1.09000 * 111.22944 * 240.93704 * 9 8 6
37 37 H 1.08998 * 110.28242 * 118.02124 * 9 8 6
38 38 H 0.97003 * 119.99266 * 6.97605 * 17 16 14
39 39 H 1.08992 * 109.46791 * 212.76529 * 22 13 11
40 40 H 1.09004 * 109.46985 * 332.76269 * 22 13 11
41 41 H 1.09001 * 112.09086 * 62.49756 * 25 10 2
42 42 H 1.09000 * 112.09386 * 189.18315 * 25 10 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.2328 1.2100 0.0000
4 6 2.0105 2.0489 -1.2601
5 6 2.0000 2.0569 1.2527
6 6 3.6741 0.6142 0.0079
7 1 4.4666 1.2805 0.3484
8 6 3.8504 0.0125 -1.4203
9 6 2.8704 -1.2336 -1.4264
10 6 2.2409 -1.2207 0.0005
11 6 1.6239 -2.5172 0.4587
12 8 1.9254 -2.9848 1.5365
13 7 0.7370 -3.1569 -0.3291
14 6 0.2342 -4.3739 0.0526
15 1 0.5045 -4.7937 1.0102
16 6 -0.6234 -5.0672 -0.7927
17 7 -0.2809 -5.2837 -2.0428
18 14 -2.2665 -5.6851 -0.1541
19 1 -2.9916 -6.3824 -1.2465
20 1 -2.0378 -6.6288 0.9694
21 1 -3.0765 -4.5352 0.3224
22 6 0.3105 -2.5519 -1.5934
23 6 1.1701 -3.0384 -2.6848
24 7 1.8335 -3.4124 -3.5285
25 6 3.4354 -0.6808 0.8631
26 1 -0.5401 -0.9307 0.0926
27 1 -0.5400 0.9307 -0.0924
28 1 1.0337 2.5298 -1.2087
29 1 2.7872 2.8104 -1.3313
30 1 2.0523 1.4040 -2.1379
31 1 2.1765 1.4492 2.1402
32 1 2.6854 2.9046 1.2507
33 1 0.9725 2.4206 1.2597
34 1 3.5626 0.7410 -2.1783
35 1 4.8803 -0.3101 -1.5729
36 1 3.4148 -2.1630 -1.5934
37 1 2.0979 -1.1030 -2.1841
38 1 0.6094 -5.0503 -2.3491
39 1 -0.7246 -2.8262 -1.7963
40 1 0.3919 -1.4672 -1.5228
41 1 3.1287 -0.4351 1.8799
42 1 4.2894 -1.3580 0.8503
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000001448530.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:35:27
Heat of formation + Delta-G solvation = 25.613642 kcal
Electronic energy + Delta-G solvation = -24743.396047 eV
Core-core repulsion = 21496.380918 eV
Total energy + Delta-G solvation = -3247.015129 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 288.158 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.43078 -40.03475 -38.12094 -36.44939 -34.57212 -34.23567 -32.77062 -30.11476
-29.30874 -28.45046 -27.43953 -26.33787 -24.02075 -22.93013 -21.55154 -20.43402
-20.11265 -18.74318 -18.23481 -17.36459 -17.03576 -16.87452 -15.98778 -15.81168
-15.43111 -15.12193 -15.04515 -14.94874 -14.16294 -14.04809 -13.90288 -13.61787
-13.52945 -13.30721 -13.22071 -13.09636 -12.83254 -12.70365 -12.55278 -12.50213
-12.26378 -12.14312 -11.96415 -11.89561 -11.74428 -11.34279 -11.18836 -10.97686
-10.92063 -10.42489 -10.21593 -9.86649 -9.08785 -5.91803 1.27882 1.30457
1.50287 1.57434 1.69336 1.83242 1.89716 2.36071 2.55421 2.93729
3.11252 3.32103 3.43552 3.59167 3.79484 3.91240 4.01463 4.04358
4.14290 4.31962 4.35107 4.42805 4.43416 4.49913 4.62588 4.76807
4.90304 4.93841 4.94865 4.99857 5.05828 5.11268 5.13064 5.15300
5.29547 5.34392 5.48911 5.60742 5.61319 5.64668 5.93006 5.96930
6.30424 6.43042 6.85104 7.26556 7.82483 8.13759
Molecular weight = 288.16amu
Principal moments of inertia in cm(-1)
A = 0.021791 B = 0.006396 C = 0.005946
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.619702 B = 4376.774076 C = 4707.631766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.102 4.102
3 C -0.025 4.025
4 C -0.138 4.138
5 C -0.132 4.132
6 C -0.077 4.077
7 H 0.134 0.866
8 C -0.116 4.116
9 C -0.110 4.110
10 C -0.071 4.071
11 C 0.461 3.539
12 O -0.620 6.620
13 N -0.437 5.437
14 C -0.493 4.493
15 H 0.069 0.931
16 C 0.016 3.984
17 N -0.838 5.838
18 Si 1.095 2.905
19 H -0.275 1.275
20 H -0.278 1.278
21 H -0.257 1.257
22 C 0.185 3.815
23 C 0.218 3.782
24 N -0.464 5.464
25 C -0.095 4.095
26 H 0.088 0.912
27 H 0.141 0.859
28 H 0.066 0.934
29 H 0.079 0.921
30 H 0.057 0.943
31 H 0.041 0.959
32 H 0.080 0.920
33 H 0.063 0.937
34 H 0.103 0.897
35 H 0.069 0.931
36 H 0.031 0.969
37 H 0.069 0.931
38 H 0.273 0.727
39 H 0.117 0.883
40 H 0.150 0.850
41 H 0.066 0.934
42 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.198 18.805 0.043 18.843
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C -0.103 4.103
3 C -0.025 4.025
4 C -0.195 4.195
5 C -0.189 4.189
6 C -0.095 4.095
7 H 0.152 0.848
8 C -0.153 4.153
9 C -0.148 4.148
10 C -0.075 4.075
11 C 0.252 3.748
12 O -0.507 6.507
13 N -0.155 5.155
14 C -0.616 4.616
15 H 0.087 0.913
16 C -0.195 4.195
17 N -0.468 5.468
18 Si 0.914 3.086
19 H -0.200 1.200
20 H -0.204 1.204
21 H -0.182 1.182
22 C 0.058 3.942
23 C -0.099 4.099
24 N -0.144 5.144
25 C -0.133 4.133
26 H 0.106 0.894
27 H 0.158 0.842
28 H 0.085 0.915
29 H 0.098 0.902
30 H 0.076 0.924
31 H 0.060 0.940
32 H 0.099 0.901
33 H 0.082 0.918
34 H 0.121 0.879
35 H 0.087 0.913
36 H 0.050 0.950
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.135 0.865
40 H 0.167 0.833
41 H 0.085 0.915
42 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 0.950 17.260 -1.190 17.327
hybrid contribution 1.336 -0.568 0.885 1.700
sum 2.285 16.693 -0.306 16.851
Atomic orbital electron populations
1.23507 0.94221 1.03241 1.02016 1.22598 0.94254 0.93996 0.99443
1.20684 0.92213 0.91977 0.97663 1.21948 1.02952 0.99235 0.95330
1.21799 1.02631 0.99115 0.95397 1.23708 0.97100 0.94791 0.93888
0.84807 1.23479 0.98257 0.95423 0.98148 1.23422 0.98892 0.98833
0.93677 1.22080 0.97197 0.90550 0.97644 1.20176 0.80995 0.87786
0.85810 1.90471 1.64538 1.70676 1.24984 1.43745 1.38151 1.17770
1.15875 1.19966 1.34323 1.00995 1.06356 0.91268 1.27534 1.05250
0.94001 0.92705 1.71035 1.22805 1.32475 1.20534 0.83290 0.72010
0.77440 0.75873 1.20018 1.20392 1.18200 1.19758 0.96258 1.00280
0.77890 1.30101 0.93638 0.92040 0.94169 1.81041 1.11370 1.09751
1.12235 1.23303 0.94892 0.97050 0.98086 0.89395 0.84155 0.91500
0.90248 0.92370 0.94007 0.90147 0.91815 0.87876 0.91268 0.95002
0.91289 0.91513 0.86548 0.83256 0.91539 0.92647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -5.17 12.17 67.78 0.83 -4.34 16
2 C -0.10 -2.86 3.36 -15.09 -0.05 -2.91 16
3 C -0.03 -0.51 0.62 -51.43 -0.03 -0.54 16
4 C -0.14 -2.07 7.59 71.98 0.55 -1.53 16
5 C -0.13 -2.31 8.51 71.98 0.61 -1.70 16
6 C -0.08 -1.64 4.33 -7.33 -0.03 -1.68 16
7 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16
8 C -0.12 -2.67 6.03 33.61 0.20 -2.46 16
9 C -0.11 -3.62 3.99 33.60 0.13 -3.49 16
10 C -0.07 -2.58 0.85 -50.35 -0.04 -2.62 16
11 C 0.46 22.62 6.49 87.66 0.57 23.19 16
12 O -0.62 -36.09 16.12 -3.06 -0.05 -36.13 16
13 N -0.44 -21.60 2.37 -645.41 -1.53 -23.13 16
14 C -0.49 -27.57 9.15 84.04 0.77 -26.80 16
15 H 0.07 4.36 7.39 -2.91 -0.02 4.34 16
16 C 0.02 0.85 4.12 84.92 0.35 1.20 16
17 N -0.84 -45.33 12.36 21.66 0.27 -45.06 16
18 Si 1.09 44.99 30.06 68.60 2.06 47.05 16
19 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16
20 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16
21 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16
22 C 0.19 7.55 3.78 84.57 0.32 7.87 16
23 C 0.22 9.52 9.25 89.44 0.83 10.35 16
24 N -0.46 -21.21 18.20 20.01 0.36 -20.84 16
25 C -0.10 -3.04 5.64 33.38 0.19 -2.85 16
26 H 0.09 2.84 6.22 -2.91 -0.02 2.82 16
27 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16
28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
29 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16
30 H 0.06 0.96 6.12 -2.39 -0.01 0.95 16
31 H 0.04 0.88 7.17 -2.39 -0.02 0.86 16
32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16
33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.10 1.89 5.44 -2.39 -0.01 1.88 16
35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
36 H 0.03 1.25 7.82 -2.39 -0.02 1.23 16
37 H 0.07 2.20 4.89 -2.39 -0.01 2.19 16
38 H 0.27 15.31 5.49 -92.71 -0.51 14.80 16
39 H 0.12 4.74 6.94 -2.39 -0.02 4.72 16
40 H 0.15 4.99 2.94 -2.38 -0.01 4.98 16
41 H 0.07 2.20 7.20 -2.39 -0.02 2.19 16
42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16
Total: -1.00 -71.14 318.97 7.60 -63.54
By element:
Atomic # 1 Polarization: 21.61 SS G_CDS: 1.30 Total: 22.90 kcal
Atomic # 6 Polarization: -13.51 SS G_CDS: 5.19 Total: -8.32 kcal
Atomic # 7 Polarization: -88.14 SS G_CDS: -0.89 Total: -89.04 kcal
Atomic # 8 Polarization: -36.09 SS G_CDS: -0.05 Total: -36.13 kcal
Atomic # 14 Polarization: 44.99 SS G_CDS: 2.06 Total: 47.05 kcal
Total: -71.14 7.60 -63.54 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000001448530.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.152 kcal
(2) G-P(sol) polarization free energy of solvation -71.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds