Wall clock time and date at job start Tue Mar 31 2020 03:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35894 * 117.00315 * 2 1 4 4 C 1.38759 * 120.05572 * 354.55520 * 3 2 1 5 5 C 1.38125 * 119.94573 * 179.75080 * 4 3 2 6 6 C 1.38289 * 120.05183 * 0.52678 * 5 4 3 7 7 C 1.38240 * 120.11411 * 359.74155 * 6 5 4 8 8 C 1.38169 * 120.05661 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.02994 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.62362 * 355.44057 * 9 8 7 11 11 C 1.50696 * 109.47210 * 294.91986 * 10 9 8 12 12 H 1.08000 * 120.00259 * 4.92752 * 11 10 9 13 13 C 1.37879 * 120.00021 * 184.92846 * 11 10 9 14 14 N 1.31515 * 119.99730 * 5.67790 * 13 11 10 15 15 Si 1.86797 * 120.00232 * 185.68288 * 13 11 10 16 16 H 1.48494 * 109.47009 * 5.01889 * 15 13 11 17 17 H 1.48505 * 109.46998 * 125.01819 * 15 13 11 18 18 H 1.48496 * 109.47223 * 245.01641 * 15 13 11 19 19 C 1.53230 * 109.63050 * 115.82667 * 9 8 7 20 20 C 1.52997 * 109.37991 * 174.14717 * 19 9 8 21 21 C 1.52959 * 109.98727 * 296.68798 * 20 19 9 22 22 C 1.53224 * 109.40408 * 63.51461 * 21 20 19 23 23 C 1.51270 * 109.62179 * 235.06834 * 9 8 7 24 24 O 1.20756 * 120.85432 * 8.90547 * 23 9 8 25 25 H 1.08996 * 109.47297 * 183.94806 * 1 2 3 26 26 H 1.09002 * 109.47161 * 303.95083 * 1 2 3 27 27 H 1.09005 * 109.47032 * 63.94422 * 1 2 3 28 28 H 1.07998 * 120.02541 * 0.02562 * 4 3 2 29 29 H 1.07993 * 119.97363 * 180.29504 * 5 4 3 30 30 H 1.08002 * 119.94294 * 179.72873 * 6 5 4 31 31 H 1.08003 * 119.97305 * 179.97438 * 7 6 5 32 32 H 1.08995 * 109.46536 * 54.91865 * 10 9 8 33 33 H 1.08997 * 109.46901 * 174.91492 * 10 9 8 34 34 H 0.96998 * 120.00071 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47866 * 294.31937 * 19 9 8 36 36 H 1.09002 * 109.47959 * 54.35880 * 19 9 8 37 37 H 1.09000 * 109.39796 * 176.48829 * 20 19 9 38 38 H 1.09008 * 109.20789 * 56.76426 * 20 19 9 39 39 H 1.09010 * 109.47826 * 303.53627 * 21 20 19 40 40 H 1.09004 * 109.49740 * 183.50801 * 21 20 19 41 41 H 1.09004 * 109.62672 * 185.66418 * 22 21 20 42 42 H 1.08995 * 109.78603 * 65.18646 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2963 2.3728 -0.1140 5 6 1.9254 3.6025 -0.1085 6 6 3.3021 3.6757 -0.0006 7 6 4.0518 2.5192 0.1075 8 6 3.4268 1.2869 0.1084 9 6 4.2446 0.0267 0.2268 10 6 5.7338 0.3776 0.2172 11 6 6.1031 0.9641 -1.1209 12 1 5.3370 1.1492 -1.8594 13 6 7.4190 1.2642 -1.4026 14 7 8.3651 0.9368 -0.5499 15 14 7.8579 2.1360 -2.9953 16 1 6.6136 2.5006 -3.7191 17 1 8.6311 3.3664 -2.6893 18 1 8.6779 1.2343 -3.8435 19 6 3.8939 -0.6937 1.5330 20 6 4.6165 -2.0415 1.5793 21 6 4.1243 -2.9379 0.4418 22 6 4.4872 -2.2994 -0.9030 23 6 3.9318 -0.8927 -0.9330 24 8 3.2557 -0.5135 -1.8589 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.5739 0.8525 27 1 -0.3633 0.4514 -0.9233 28 1 0.2215 2.3160 -0.2024 29 1 1.3419 4.5074 -0.1924 30 1 3.7925 4.6379 -0.0009 31 1 5.1269 2.5790 0.1912 32 1 5.9406 1.1050 1.0022 33 1 6.3206 -0.5238 0.3934 34 1 9.2909 1.1482 -0.7478 35 1 4.2044 -0.0820 2.3801 36 1 2.8175 -0.8594 1.5791 37 1 4.4172 -2.5265 2.5349 38 1 5.6889 -1.8773 1.4729 39 1 3.0422 -3.0510 0.5103 40 1 4.5976 -3.9167 0.5191 41 1 4.0516 -2.8824 -1.7145 42 1 5.5708 -2.2677 -1.0158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001724377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:57 Heat of formation + Delta-G solvation = -62.956420 kcal Electronic energy + Delta-G solvation = -24600.723080 eV Core-core repulsion = 21317.574513 eV Total energy + Delta-G solvation = -3283.148566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.151 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43113 -38.64972 -36.87887 -35.86299 -33.59496 -32.14208 -29.65396 -29.19057 -28.68952 -26.81582 -26.41618 -23.15676 -22.57307 -21.43763 -21.02094 -20.38647 -17.76390 -17.39534 -16.34052 -15.87948 -15.40862 -15.34299 -14.78595 -14.54057 -14.10394 -13.97437 -13.71076 -13.57646 -13.17683 -13.11161 -12.47259 -12.31229 -12.09755 -11.99189 -11.60323 -11.40107 -11.22871 -11.15169 -10.96690 -10.74982 -10.65375 -10.62360 -10.39332 -10.32890 -9.99148 -9.99072 -9.21335 -9.14253 -8.55512 -8.31841 -8.04403 -7.52248 -6.07538 -4.07420 1.97954 2.08986 3.08578 3.29849 3.38402 3.46969 3.73968 4.36853 4.44843 4.98645 5.17202 5.23471 5.29494 5.31130 5.34660 5.38248 5.40624 5.48398 5.62848 5.64963 5.83389 5.89634 5.93440 6.01472 6.08799 6.14302 6.34463 6.38141 6.44548 6.49763 6.52521 6.61784 6.66159 6.80245 6.85990 6.95667 7.07262 7.31234 7.49739 7.60469 7.63524 7.91908 7.95274 8.31357 8.56969 9.00384 9.56821 11.02547 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.013867 B = 0.008443 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.751393 B = 3315.740009 C = 4453.361343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.137 3.863 4 C -0.225 4.225 5 C -0.094 4.094 6 C -0.170 4.170 7 C -0.050 4.050 8 C -0.077 4.077 9 C -0.053 4.053 10 C 0.035 3.965 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.890 5.890 15 Si 0.882 3.118 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.102 4.102 20 C -0.126 4.126 21 C -0.106 4.106 22 C -0.168 4.168 23 C 0.403 3.597 24 O -0.464 6.464 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 -2.752 5.137 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.221 6.221 3 C 0.093 3.907 4 C -0.244 4.244 5 C -0.113 4.113 6 C -0.189 4.189 7 C -0.068 4.068 8 C -0.078 4.078 9 C -0.054 4.054 10 C -0.002 4.002 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.710 3.290 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.140 4.140 20 C -0.163 4.163 21 C -0.144 4.144 22 C -0.206 4.206 23 C 0.279 3.721 24 O -0.337 6.337 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.176 0.824 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.696 -2.742 4.667 12.888 hybrid contribution 0.130 0.729 -1.031 1.269 sum -11.566 -2.013 3.636 12.290 Atomic orbital electron populations 1.22909 0.79939 1.02935 1.00706 1.86099 1.19977 1.27264 1.88718 1.18844 0.91940 0.83697 0.96264 1.20965 0.99161 0.92664 1.11589 1.20763 0.94815 0.96287 0.99392 1.21056 0.93660 0.98565 1.05585 1.21598 1.02048 0.90161 0.92994 1.18956 0.89263 0.95562 1.04002 1.20289 0.99714 0.91282 0.94105 1.19287 0.85445 0.97885 0.97566 1.21332 0.92859 1.41526 1.00201 0.92044 1.24925 0.96462 0.95781 0.96568 1.69963 1.00295 1.46499 1.36099 0.86667 0.78642 0.79634 0.84083 1.19516 1.20938 1.21006 1.21610 1.00158 0.95660 0.96525 1.21631 1.01922 0.95246 0.97491 1.21427 1.00728 0.98436 0.93772 1.22254 1.03992 0.95850 0.98488 1.24164 0.74352 0.88371 0.85230 1.90274 1.31352 1.77232 1.34815 0.89086 0.93296 0.93256 0.86611 0.86988 0.86624 0.82422 0.95607 0.94422 0.92964 0.91667 0.91809 0.92264 0.90308 0.92272 0.91736 0.90774 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.82 101.05 0.99 1.38 16 2 O -0.31 -5.43 6.67 -37.97 -0.25 -5.68 16 3 C 0.14 2.63 5.68 -39.21 -0.22 2.41 16 4 C -0.23 -3.81 9.04 -39.43 -0.36 -4.17 16 5 C -0.09 -1.55 10.04 -39.60 -0.40 -1.95 16 6 C -0.17 -3.08 10.04 -39.56 -0.40 -3.47 16 7 C -0.05 -1.05 8.17 -39.61 -0.32 -1.37 16 8 C -0.08 -1.61 4.08 -104.47 -0.43 -2.04 16 9 C -0.05 -1.09 0.27 -156.41 -0.04 -1.14 16 10 C 0.03 0.82 3.33 -27.88 -0.09 0.73 16 11 C -0.52 -13.83 6.12 -34.44 -0.21 -14.04 16 12 H 0.06 1.75 6.91 -52.49 -0.36 1.38 16 13 C 0.06 1.76 5.45 -17.82 -0.10 1.66 16 14 N -0.89 -24.95 13.28 55.43 0.74 -24.22 16 15 Si 0.88 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 C -0.10 -1.76 4.60 -26.61 -0.12 -1.88 16 20 C -0.13 -1.91 5.65 -26.75 -0.15 -2.07 16 21 C -0.11 -1.55 5.94 -26.64 -0.16 -1.71 16 22 C -0.17 -3.01 5.95 -27.49 -0.16 -3.18 16 23 C 0.40 8.63 3.89 -28.48 -0.11 8.52 16 24 O -0.46 -11.23 15.32 -12.56 -0.19 -11.42 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.53 7.68 -51.93 -0.40 0.14 16 27 H 0.05 0.60 7.66 -51.93 -0.40 0.21 16 28 H 0.12 1.63 6.33 -52.49 -0.33 1.30 16 29 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.16 3.56 5.06 -52.48 -0.27 3.30 16 32 H 0.03 0.63 6.97 -51.93 -0.36 0.27 16 33 H 0.04 0.92 6.06 -51.93 -0.31 0.61 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.07 6.39 -51.93 -0.33 0.74 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.32 6.32 -51.92 -0.33 0.99 16 39 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 1.93 8.01 -51.93 -0.42 1.52 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -30.66 324.88 -8.14 -38.80 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.03 Total: 3.46 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.28 Total: -22.32 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.74 Total: -24.22 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.45 Total: -17.10 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.66 -8.14 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001724377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.157 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds