Wall clock time and date at job start Tue Mar 31 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46861 * 179.97438 * 10 9 7 12 12 C 1.47103 * 111.00046 * 66.04370 * 11 10 9 13 13 C 1.53779 * 107.94704 * 186.91366 * 12 11 10 14 14 H 1.09004 * 110.55554 * 174.22339 * 13 12 11 15 15 C 1.53291 * 108.00579 * 295.26471 * 13 12 11 16 16 C 1.53132 * 107.50774 * 61.48127 * 15 13 12 17 17 H 1.08995 * 108.31421 * 184.44166 * 16 15 13 18 18 C 1.46619 * 110.99956 * 190.18009 * 11 10 9 19 19 C 1.51913 * 109.39114 * 67.13895 * 16 15 13 20 20 N 1.46301 * 112.46703 * 313.27889 * 19 16 15 21 21 C 1.35624 * 116.85060 * 196.40049 * 20 19 16 22 22 O 1.22062 * 119.60732 * 7.03330 * 21 20 19 23 23 C 1.40143 * 120.79008 * 187.03550 * 21 20 19 24 24 C 1.36422 * 119.13314 * 357.50203 * 23 21 20 25 25 C 1.39910 * 118.83726 * 358.91057 * 24 23 21 26 26 C 1.35329 * 123.37204 * 17.21660 * 20 19 16 27 27 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 29 29 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 30 30 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 31 31 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 32 32 H 1.09001 * 109.76684 * 306.53194 * 12 11 10 33 33 H 1.09007 * 109.76627 * 67.30266 * 12 11 10 34 34 H 1.09003 * 109.85492 * 180.98653 * 15 13 12 35 35 H 1.09009 * 109.85178 * 301.98266 * 15 13 12 36 36 H 1.09000 * 109.13985 * 298.11742 * 18 11 10 37 37 H 1.09004 * 109.14474 * 57.24850 * 18 11 10 38 38 H 1.09004 * 108.87911 * 74.04969 * 19 16 15 39 39 H 1.09001 * 108.87810 * 192.50675 * 19 16 15 40 40 H 1.08003 * 120.43449 * 177.52142 * 23 21 20 41 41 H 1.07994 * 120.57626 * 178.88314 * 24 23 21 42 42 H 1.07996 * 119.70883 * 180.99641 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0009 12 6 6.0178 -2.0789 1.2560 13 6 7.5435 -1.9496 1.1131 14 1 7.9679 -1.4455 1.9814 15 6 8.1274 -3.3599 0.9716 16 6 7.5359 -3.9782 -0.2984 17 1 7.8804 -5.0098 -0.3695 18 6 6.0161 -3.9837 -0.2411 19 6 8.0558 -3.2289 -1.5133 20 7 7.9746 -1.7771 -1.3519 21 6 8.0836 -1.0286 -2.4776 22 8 8.1116 -1.5783 -3.5670 23 6 8.1645 0.3686 -2.4049 24 6 8.0806 0.9763 -1.1864 25 6 7.8930 0.1839 -0.0487 26 6 7.8157 -1.1691 -0.1534 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6803 -0.8889 29 1 3.8746 -0.6799 0.8911 30 1 3.6579 -3.1505 0.8908 31 1 3.6587 -3.1502 -0.8892 32 1 5.5799 -1.0971 1.4359 33 1 5.7804 -2.7465 2.0844 34 1 9.2126 -3.3044 0.8856 35 1 7.8543 -3.9622 1.8382 36 1 5.6911 -4.6438 0.5631 37 1 5.6241 -4.3555 -1.1878 38 1 9.0962 -3.5076 -1.6810 39 1 7.4697 -3.5204 -2.3849 40 1 8.2912 0.9567 -3.3019 41 1 8.1581 2.0501 -1.1016 42 1 7.8085 0.6515 0.9212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002145029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:37 Heat of formation + Delta-G solvation = -1.065519 kcal Electronic energy + Delta-G solvation = -24124.171069 eV Core-core repulsion = 20875.999045 eV Total energy + Delta-G solvation = -3248.172024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81358 -39.10100 -36.60804 -35.48616 -33.59389 -32.67438 -32.25075 -29.88027 -28.75720 -26.79837 -25.49992 -23.90768 -23.16298 -22.51252 -22.21474 -20.02413 -18.44413 -17.41760 -17.00057 -16.76907 -16.09177 -15.71459 -15.53912 -14.74457 -14.59027 -14.37689 -14.17157 -14.11882 -13.95468 -13.14898 -13.01461 -12.79719 -12.65537 -12.35278 -12.10974 -12.00007 -11.89145 -11.42226 -11.15747 -11.08582 -10.89234 -10.65320 -10.54132 -10.16251 -9.83296 -9.77127 -9.71923 -9.65442 -9.22841 -8.54411 -8.00003 -7.62973 -6.06204 -4.04717 1.04875 2.08102 2.77475 3.32125 3.38998 3.42342 3.82377 4.02135 4.33212 4.33750 4.42766 4.44804 4.53127 4.94873 4.97555 5.04115 5.14306 5.28074 5.30714 5.38274 5.41717 5.46867 5.51207 5.53150 5.59747 5.64831 5.72307 5.80336 5.86921 5.96849 6.14769 6.22857 6.25138 6.30464 6.47890 6.69250 6.72274 7.05968 7.20401 7.31259 7.48147 7.53710 7.80480 8.25204 8.50139 8.97358 9.56202 11.07077 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.006244 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.704288 B = 4483.465670 C = 5233.248556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.289 1.289 7 C -0.523 4.523 8 H 0.070 0.930 9 C -0.004 4.004 10 C 0.074 3.926 11 N -0.542 5.542 12 C 0.057 3.943 13 C -0.058 4.058 14 H 0.109 0.891 15 C -0.118 4.118 16 C -0.100 4.100 17 H 0.093 0.907 18 C 0.058 3.942 19 C 0.109 3.891 20 N -0.466 5.466 21 C 0.514 3.486 22 O -0.564 6.564 23 C -0.266 4.266 24 C -0.003 4.003 25 C -0.256 4.256 26 C 0.220 3.780 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.339 -4.703 4.459 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.042 4.042 10 C -0.052 4.052 11 N -0.267 5.267 12 C -0.071 4.071 13 C -0.077 4.077 14 H 0.127 0.873 15 C -0.155 4.155 16 C -0.119 4.119 17 H 0.111 0.889 18 C -0.070 4.070 19 C -0.012 4.012 20 N -0.174 5.174 21 C 0.318 3.682 22 O -0.448 6.448 23 C -0.288 4.288 24 C -0.025 4.025 25 C -0.279 4.279 26 C 0.108 3.892 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.160 0.840 41 H 0.148 0.852 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 20.348 -4.729 3.363 21.159 hybrid contribution -0.147 0.497 0.631 0.816 sum 20.201 -4.233 3.994 21.022 Atomic orbital electron populations 1.69913 1.06319 1.26941 1.51015 1.24989 0.94703 0.99170 0.94409 0.86764 0.80269 0.83498 0.78714 1.20199 1.18888 1.21489 1.21058 0.89365 0.94491 1.51182 0.91175 1.19538 0.96457 0.91506 0.96666 1.22106 0.82611 1.00600 0.99919 1.62076 1.10447 1.20635 1.33538 1.22453 0.91530 1.01952 0.91197 1.20981 0.97607 0.95389 0.93768 0.87299 1.21748 1.00206 0.95472 0.98105 1.21119 0.96357 1.00107 0.94300 0.88899 1.21876 0.92851 0.90755 1.01562 1.21472 1.01966 0.77943 0.99863 1.45078 1.57131 1.08543 1.06658 1.17255 0.79233 0.88685 0.83037 1.90907 1.54333 1.73915 1.25689 1.21848 1.14306 0.93165 0.99432 1.21294 0.88931 1.00130 0.92096 1.20438 1.15887 0.91378 1.00202 1.20122 0.89711 0.92856 0.86487 0.92706 0.96315 0.96674 0.95310 0.91440 0.88890 0.93667 0.90945 0.90179 0.94518 0.90403 0.90621 0.88558 0.83985 0.85198 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 -0.09 3.98 -27.88 -0.11 -0.21 16 10 C 0.07 1.44 4.90 -3.82 -0.02 1.43 16 11 N -0.54 -8.59 3.72 -234.76 -0.87 -9.47 16 12 C 0.06 0.77 4.81 -3.31 -0.02 0.75 16 13 C -0.06 -0.61 3.11 -90.96 -0.28 -0.89 16 14 H 0.11 0.86 8.06 -51.93 -0.42 0.44 16 15 C -0.12 -1.01 5.36 -26.51 -0.14 -1.15 16 16 C -0.10 -0.99 2.82 -91.57 -0.26 -1.25 16 17 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 18 C 0.06 0.73 4.83 -4.44 -0.02 0.71 16 19 C 0.11 1.34 5.23 -4.70 -0.02 1.31 16 20 N -0.47 -6.78 2.82 -115.52 -0.33 -7.11 16 21 C 0.51 8.88 7.33 -15.16 -0.11 8.77 16 22 O -0.56 -11.47 16.52 4.86 0.08 -11.39 16 23 C -0.27 -4.01 9.97 -39.52 -0.39 -4.41 16 24 C 0.00 -0.03 10.11 -39.61 -0.40 -0.43 16 25 C -0.26 -3.21 9.51 -39.78 -0.38 -3.59 16 26 C 0.22 2.86 5.01 -81.62 -0.41 2.45 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 29 H 0.02 0.35 5.49 -51.93 -0.29 0.07 16 30 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 31 H 0.07 1.36 8.02 -51.93 -0.42 0.95 16 32 H 0.09 1.43 6.23 -51.93 -0.32 1.11 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 1.02 8.01 -51.93 -0.42 0.61 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.36 7.38 -51.93 -0.38 0.98 16 40 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.14 1.40 8.01 -52.49 -0.42 0.98 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -34.42 325.46 -9.55 -43.97 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.45 Total: -1.23 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.00 Total: -9.78 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.43 Total: -43.74 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.42 -9.55 -43.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002145029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.908 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds