Wall clock time and date at job start Tue Mar 31 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46861 * 179.97438 * 10 9 7 12 12 C 1.47103 * 111.00046 * 66.04370 * 11 10 9 13 13 C 1.53779 * 107.94704 * 186.91366 * 12 11 10 14 14 H 1.09004 * 110.55554 * 174.22339 * 13 12 11 15 15 C 1.53291 * 108.00579 * 295.26471 * 13 12 11 16 16 C 1.53132 * 107.50774 * 61.48127 * 15 13 12 17 17 H 1.08995 * 108.31421 * 184.44166 * 16 15 13 18 18 C 1.46619 * 110.99956 * 190.18009 * 11 10 9 19 19 C 1.51913 * 109.39114 * 67.13895 * 16 15 13 20 20 N 1.46301 * 112.46703 * 313.27889 * 19 16 15 21 21 C 1.35624 * 116.85060 * 196.40049 * 20 19 16 22 22 O 1.22062 * 119.60732 * 7.03330 * 21 20 19 23 23 C 1.40143 * 120.79008 * 187.03550 * 21 20 19 24 24 C 1.36422 * 119.13314 * 357.50203 * 23 21 20 25 25 C 1.39910 * 118.83726 * 358.91057 * 24 23 21 26 26 C 1.35329 * 123.37204 * 17.21660 * 20 19 16 27 27 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 29 29 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 30 30 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 31 31 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 32 32 H 1.09001 * 109.76684 * 306.53194 * 12 11 10 33 33 H 1.09007 * 109.76627 * 67.30266 * 12 11 10 34 34 H 1.09003 * 109.85492 * 180.98653 * 15 13 12 35 35 H 1.09009 * 109.85178 * 301.98266 * 15 13 12 36 36 H 1.09000 * 109.13985 * 298.11742 * 18 11 10 37 37 H 1.09004 * 109.14474 * 57.24850 * 18 11 10 38 38 H 1.09004 * 108.87911 * 74.04969 * 19 16 15 39 39 H 1.09001 * 108.87810 * 192.50675 * 19 16 15 40 40 H 1.08003 * 120.43449 * 177.52142 * 23 21 20 41 41 H 1.07994 * 120.57626 * 178.88314 * 24 23 21 42 42 H 1.07996 * 119.70883 * 180.99641 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4906 -2.6364 0.0009 12 6 6.0178 -2.0789 1.2560 13 6 7.5435 -1.9496 1.1131 14 1 7.9679 -1.4455 1.9814 15 6 8.1274 -3.3599 0.9716 16 6 7.5359 -3.9782 -0.2984 17 1 7.8804 -5.0098 -0.3695 18 6 6.0161 -3.9837 -0.2411 19 6 8.0558 -3.2289 -1.5133 20 7 7.9746 -1.7771 -1.3519 21 6 8.0836 -1.0286 -2.4776 22 8 8.1116 -1.5783 -3.5670 23 6 8.1645 0.3686 -2.4049 24 6 8.0806 0.9763 -1.1864 25 6 7.8930 0.1839 -0.0487 26 6 7.8157 -1.1691 -0.1534 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6803 -0.8889 29 1 3.8746 -0.6799 0.8911 30 1 3.6579 -3.1505 0.8908 31 1 3.6587 -3.1502 -0.8892 32 1 5.5799 -1.0971 1.4359 33 1 5.7804 -2.7465 2.0844 34 1 9.2126 -3.3044 0.8856 35 1 7.8543 -3.9622 1.8382 36 1 5.6911 -4.6438 0.5631 37 1 5.6241 -4.3555 -1.1878 38 1 9.0962 -3.5076 -1.6810 39 1 7.4697 -3.5204 -2.3849 40 1 8.2912 0.9567 -3.3019 41 1 8.1581 2.0501 -1.1016 42 1 7.8085 0.6515 0.9212 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002145029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:36 Heat of formation + Delta-G solvation = -24.001577 kcal Electronic energy + Delta-G solvation = -24125.165651 eV Core-core repulsion = 20875.999045 eV Total energy + Delta-G solvation = -3249.166606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.84202 -40.21065 -37.83543 -36.68939 -35.16463 -34.18122 -33.34591 -31.62233 -29.78690 -27.80047 -27.06341 -24.95635 -24.40510 -23.51462 -23.49537 -21.68748 -19.37936 -19.07630 -18.42661 -17.88432 -17.17725 -16.80266 -16.73612 -16.34914 -15.93689 -15.51677 -15.34847 -15.15708 -15.12140 -14.71905 -14.37124 -14.13494 -13.93543 -13.54469 -13.22631 -13.06815 -13.04108 -12.92732 -12.80719 -12.18432 -12.02986 -11.97976 -11.80592 -11.68949 -11.51834 -11.29854 -11.15170 -10.89832 -10.80699 -10.76323 -9.21629 -8.74156 -8.32387 -6.36782 0.00932 0.97520 1.33950 1.36470 1.47818 1.74793 2.34197 2.73116 2.91927 3.03429 3.39521 3.49355 3.61991 3.68136 4.00731 4.04280 4.19103 4.22294 4.27807 4.42387 4.45678 4.52563 4.53633 4.58335 4.64910 4.67380 4.74839 4.84835 4.87975 4.95014 4.96945 5.04456 5.17324 5.22949 5.27694 5.32712 5.44498 5.46032 5.60636 5.74469 6.08827 6.21437 6.22837 6.29940 6.71097 7.06417 7.28248 8.84244 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.016036 B = 0.006244 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.704288 B = 4483.465670 C = 5233.248556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.237 1.237 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.008 3.992 10 C 0.088 3.912 11 N -0.557 5.557 12 C 0.053 3.947 13 C -0.049 4.049 14 H 0.148 0.852 15 C -0.111 4.111 16 C -0.092 4.092 17 H 0.127 0.873 18 C 0.056 3.944 19 C 0.103 3.897 20 N -0.465 5.465 21 C 0.491 3.509 22 O -0.618 6.618 23 C -0.301 4.301 24 C 0.012 3.988 25 C -0.260 4.260 26 C 0.208 3.792 27 H 0.267 0.733 28 H 0.003 0.997 29 H 0.028 0.972 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.252 -4.133 7.425 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.160 1.160 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.049 0.951 9 C -0.030 4.030 10 C -0.040 4.040 11 N -0.282 5.282 12 C -0.075 4.075 13 C -0.068 4.068 14 H 0.166 0.834 15 C -0.149 4.149 16 C -0.110 4.110 17 H 0.145 0.855 18 C -0.072 4.072 19 C -0.018 4.018 20 N -0.171 5.171 21 C 0.298 3.702 22 O -0.508 6.508 23 C -0.323 4.323 24 C -0.010 4.010 25 C -0.282 4.282 26 C 0.096 3.904 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 23.286 -4.181 6.375 24.502 hybrid contribution -1.127 0.255 -0.262 1.185 sum 22.159 -3.926 6.113 23.319 Atomic orbital electron populations 1.70063 1.08282 1.28203 1.52497 1.25971 0.95580 1.03452 0.93967 0.85683 0.79989 0.78318 0.78849 1.20410 1.15973 1.20574 1.21420 0.92026 0.93130 1.50667 0.95066 1.19357 0.93159 0.94291 0.96205 1.21711 0.85711 0.97523 0.99021 1.61964 1.07612 1.23026 1.35587 1.22537 0.93562 1.01031 0.90386 1.21140 0.95288 0.96867 0.93502 0.83428 1.21806 1.01218 0.94144 0.97697 1.21138 0.93998 1.01790 0.94115 0.85537 1.21955 0.94876 0.89139 1.01247 1.21649 1.02704 0.77206 1.00225 1.45157 1.55958 1.09327 1.06689 1.17691 0.79570 0.89736 0.83201 1.90857 1.57502 1.74870 1.27523 1.21917 1.17034 0.92521 1.00842 1.21708 0.86279 1.01916 0.91127 1.20980 1.14423 0.91379 1.01424 1.20775 0.89086 0.93804 0.86779 0.92450 0.97902 0.95334 0.95316 0.93426 0.90819 0.91915 0.88824 0.87706 0.92900 0.92151 0.88858 0.91555 0.84154 0.81932 0.81208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.43 5.47 84.65 0.46 0.90 16 3 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.24 -10.06 6.54 99.48 0.65 -9.40 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.53 -31.20 9.66 25.60 0.25 -30.95 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C 0.01 0.36 3.98 29.85 0.12 0.48 16 10 C 0.09 3.44 4.90 86.30 0.42 3.87 16 11 N -0.56 -16.79 3.72 -896.64 -3.34 -20.13 16 12 C 0.05 1.23 4.81 86.53 0.42 1.64 16 13 C -0.05 -0.78 3.11 -11.01 -0.03 -0.81 16 14 H 0.15 1.30 8.06 -2.39 -0.02 1.28 16 15 C -0.11 -1.28 5.36 30.74 0.16 -1.12 16 16 C -0.09 -1.51 2.82 -11.41 -0.03 -1.54 16 17 H 0.13 1.31 8.14 -2.39 -0.02 1.30 16 18 C 0.06 1.29 4.83 86.06 0.42 1.71 16 19 C 0.10 2.42 5.23 86.06 0.45 2.87 16 20 N -0.46 -13.00 2.82 -636.96 -1.80 -14.80 16 21 C 0.49 17.36 7.33 84.57 0.62 17.98 16 22 O -0.62 -26.66 16.52 -5.52 -0.09 -26.75 16 23 C -0.30 -9.10 9.97 22.31 0.22 -8.88 16 24 C 0.01 0.27 10.11 22.25 0.22 0.49 16 25 C -0.26 -5.50 9.51 22.14 0.21 -5.29 16 26 C 0.21 4.72 5.01 41.65 0.21 4.93 16 27 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.00 0.13 7.57 -2.39 -0.02 0.11 16 29 H 0.03 1.28 5.49 -2.39 -0.01 1.26 16 30 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 31 H 0.05 2.01 8.02 -2.39 -0.02 1.99 16 32 H 0.07 2.01 6.23 -2.39 -0.01 1.99 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.59 8.01 -2.38 -0.02 1.57 16 38 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 1.96 7.38 -2.39 -0.02 1.94 16 40 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.17 2.47 8.01 -2.91 -0.02 2.45 16 Total: -1.00 -80.38 325.46 2.02 -78.36 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.94 Total: 10.23 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 4.12 Total: -13.72 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -4.84 Total: -94.87 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.09 Total: -26.75 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -80.38 2.02 -78.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002145029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.356 kcal (2) G-P(sol) polarization free energy of solvation -80.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds