Wall clock time and date at job start Tue Mar 31 2020 03:38:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 110.83772 * 2 1
4 4 C 1.54599 * 110.77788 * 236.60098 * 2 1 3
5 5 C 1.51576 * 102.83111 * 216.18079 * 4 2 1
6 6 C 1.37918 * 131.55736 * 196.33103 * 5 4 2
7 7 C 1.38305 * 120.07964 * 179.27670 * 6 5 4
8 8 C 1.38305 * 119.88054 * 0.02562 * 7 6 5
9 9 C 1.37904 * 120.26804 * 0.13652 * 8 7 6
10 10 C 1.38961 * 107.95727 * 15.94463 * 5 4 2
11 11 N 1.40044 * 110.95814 * 0.79412 * 10 5 4
12 12 C 1.46892 * 111.00389 * 103.39611 * 11 10 5
13 13 C 1.50699 * 109.47271 * 76.24470 * 12 11 10
14 14 O 1.21291 * 119.99824 * 6.35397 * 13 12 11
15 15 N 1.34776 * 120.00311 * 186.34539 * 13 12 11
16 16 C 1.46495 * 120.00018 * 0.02562 * 15 13 12
17 17 C 1.46505 * 119.99870 * 180.02562 * 15 13 12
18 18 C 1.50702 * 109.47284 * 90.00055 * 17 15 13
19 19 H 1.07999 * 119.99774 * 359.97438 * 18 17 15
20 20 C 1.37871 * 120.00127 * 179.97438 * 18 17 15
21 21 N 1.31517 * 119.99869 * 0.02562 * 20 18 17
22 22 Si 1.86796 * 119.99954 * 180.02562 * 20 18 17
23 23 H 1.48503 * 109.47444 * 90.00160 * 22 20 18
24 24 H 1.48506 * 109.46942 * 210.00256 * 22 20 18
25 25 H 1.48501 * 109.47049 * 329.99895 * 22 20 18
26 26 H 1.08999 * 109.47078 * 296.60396 * 1 2 3
27 27 H 1.09002 * 109.47120 * 56.60497 * 1 2 3
28 28 H 1.09000 * 109.46995 * 176.60568 * 1 2 3
29 29 H 1.08997 * 110.73981 * 97.84793 * 4 2 1
30 30 H 1.08991 * 110.89550 * 334.58538 * 4 2 1
31 31 H 1.07996 * 119.96247 * 359.29825 * 6 5 4
32 32 H 1.07998 * 120.05763 * 179.97438 * 7 6 5
33 33 H 1.08006 * 119.86238 * 180.16204 * 8 7 6
34 34 H 1.07997 * 119.90098 * 180.02562 * 9 8 7
35 35 H 1.09002 * 109.47528 * 316.25167 * 12 11 10
36 36 H 1.09002 * 109.47577 * 196.24891 * 12 11 10
37 37 H 1.09001 * 109.46738 * 269.99675 * 16 15 13
38 38 H 1.08997 * 109.47003 * 29.99379 * 16 15 13
39 39 H 1.08994 * 109.47058 * 149.99927 * 16 15 13
40 40 H 1.08999 * 109.47377 * 330.00004 * 17 15 13
41 41 H 1.08995 * 109.47110 * 210.00275 * 17 15 13
42 42 H 0.96992 * 120.00036 * 0.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9178 1.0188 0.0000
4 6 2.0785 -0.7957 -1.2067
5 6 3.3132 -1.4644 -0.6359
6 6 4.3952 -2.0622 -1.2474
7 6 5.4167 -2.5951 -0.4823
8 6 5.3511 -2.5279 0.8976
9 6 4.2698 -1.9341 1.5140
10 6 3.2351 -1.3967 0.7498
11 7 2.0547 -0.7612 1.1546
12 6 1.0680 -1.7385 1.6331
13 6 1.4512 -2.2044 3.0141
14 8 2.3804 -1.6831 3.5938
15 7 0.7614 -3.2001 3.6050
16 6 -0.3606 -3.8299 2.9047
17 6 1.1337 -3.6526 4.9478
18 6 0.3727 -2.8554 5.9756
19 1 -0.3188 -2.0881 5.6601
20 6 0.5592 -3.1055 7.3185
21 7 1.4016 -4.0395 7.7026
22 14 -0.3847 -2.1179 8.5924
23 1 -1.6676 -2.8010 8.8975
24 1 0.4247 -2.0078 9.8326
25 1 -0.6616 -0.7595 8.0599
26 1 -0.3633 0.4602 0.9189
27 1 -0.3633 0.5656 -0.8580
28 1 -0.3633 -1.0259 -0.0608
29 1 2.3455 -0.1241 -2.0227
30 1 1.3565 -1.5402 -1.5420
31 1 4.4451 -2.1141 -2.3250
32 1 6.2637 -3.0635 -0.9615
33 1 6.1503 -2.9417 1.4947
34 1 4.2249 -1.8845 2.5919
35 1 1.0437 -2.5920 0.9555
36 1 0.0827 -1.2734 1.6669
37 1 -1.2817 -3.2973 3.1414
38 1 -0.1851 -3.7921 1.8296
39 1 -0.4498 -4.8688 3.2220
40 1 2.2040 -3.5087 5.0960
41 1 0.8910 -4.7097 5.0552
42 1 1.8920 -4.5521 7.0411
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000016382021.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:33
Heat of formation + Delta-G solvation = 18.312691 kcal
Electronic energy + Delta-G solvation = -23363.883783 eV
Core-core repulsion = 20116.552060 eV
Total energy + Delta-G solvation = -3247.331722 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 288.158 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.10584 -38.69929 -37.02283 -34.90658 -32.87825 -32.29977 -31.24934 -29.91243
-27.87737 -26.64684 -26.35400 -25.19242 -22.79715 -21.91594 -21.23127 -20.37182
-18.66292 -17.03865 -16.75917 -16.70168 -15.89802 -15.46840 -15.13670 -15.03597
-14.42782 -14.03317 -13.73350 -13.64554 -13.37338 -13.05210 -12.72433 -12.56023
-12.41649 -12.26281 -12.14633 -11.93602 -11.77428 -11.59080 -11.29974 -11.20755
-11.15830 -10.90387 -10.69830 -10.54906 -10.09771 -9.41177 -9.09560 -8.81828
-8.69752 -8.36288 -7.79825 -7.58706 -6.36481 -4.08068 1.37168 1.51378
3.37855 3.41769 3.43839 3.50164 3.65243 3.82085 4.04860 4.46848
4.55408 4.62799 4.70824 5.01655 5.06622 5.10859 5.16514 5.25582
5.29766 5.37817 5.40520 5.43920 5.49967 5.57443 5.58850 5.74491
5.81581 5.86570 5.92760 5.98720 6.08729 6.16661 6.45281 6.55069
6.65437 6.78261 6.85675 7.00060 7.14688 7.39359 7.43717 8.06062
8.30577 8.45905 8.80341 9.07398 9.61523 11.00923
Molecular weight = 288.16amu
Principal moments of inertia in cm(-1)
A = 0.020851 B = 0.004526 C = 0.004082
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1342.539303 B = 6184.828919 C = 6858.469934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.078 3.922
3 H 0.100 0.900
4 C -0.105 4.105
5 C -0.148 4.148
6 C -0.098 4.098
7 C -0.135 4.135
8 C -0.110 4.110
9 C -0.098 4.098
10 C 0.099 3.901
11 N -0.471 5.471
12 C 0.033 3.967
13 C 0.506 3.494
14 O -0.519 6.519
15 N -0.601 5.601
16 C 0.086 3.914
17 C 0.238 3.762
18 C -0.604 4.604
19 H 0.051 0.949
20 C 0.019 3.981
21 N -0.911 5.911
22 Si 1.074 2.926
23 H -0.288 1.288
24 H -0.283 1.283
25 H -0.289 1.289
26 H 0.072 0.928
27 H 0.069 0.931
28 H 0.062 0.938
29 H 0.083 0.917
30 H 0.080 0.920
31 H 0.116 0.884
32 H 0.121 0.879
33 H 0.124 0.876
34 H 0.145 0.855
35 H 0.060 0.940
36 H 0.113 0.887
37 H 0.051 0.949
38 H 0.053 0.947
39 H 0.067 0.933
40 H 0.033 0.967
41 H 0.020 0.980
42 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.117 3.461 -20.778 21.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.029 4.029
3 H 0.118 0.882
4 C -0.143 4.143
5 C -0.150 4.150
6 C -0.117 4.117
7 C -0.154 4.154
8 C -0.128 4.128
9 C -0.117 4.117
10 C 0.003 3.997
11 N -0.188 5.188
12 C -0.096 4.096
13 C 0.291 3.709
14 O -0.395 6.395
15 N -0.335 5.335
16 C -0.059 4.059
17 C 0.118 3.882
18 C -0.643 4.643
19 H 0.069 0.931
20 C -0.185 4.185
21 N -0.547 5.547
22 Si 0.902 3.098
23 H -0.215 1.215
24 H -0.209 1.209
25 H -0.215 1.215
26 H 0.091 0.909
27 H 0.088 0.912
28 H 0.081 0.919
29 H 0.102 0.898
30 H 0.098 0.902
31 H 0.134 0.866
32 H 0.139 0.861
33 H 0.142 0.858
34 H 0.163 0.837
35 H 0.078 0.922
36 H 0.131 0.869
37 H 0.069 0.931
38 H 0.072 0.928
39 H 0.086 0.914
40 H 0.051 0.949
41 H 0.038 0.962
42 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 0.186 4.282 -18.359 18.853
hybrid contribution -0.057 -0.741 -2.299 2.416
sum 0.130 3.540 -20.658 20.960
Atomic orbital electron populations
1.22124 0.93716 1.02595 1.03132 1.22740 0.95236 0.98303 0.86661
0.88234 1.21760 0.94651 0.99023 0.98839 1.20994 0.97203 1.02040
0.94801 1.20280 0.93231 0.98920 0.99251 1.21022 0.98926 1.01468
0.93981 1.21026 0.97959 0.99250 0.94606 1.21144 0.91542 0.97139
1.01893 1.19474 0.92662 0.95851 0.91755 1.59777 1.02312 1.23841
1.32900 1.22357 0.96962 0.94749 0.95530 1.20105 0.83474 0.80241
0.87076 1.90603 1.29069 1.54725 1.65101 1.47946 1.31484 1.35352
1.18704 1.21623 0.90091 0.98722 0.95428 1.19330 0.97017 0.94333
0.77524 1.22266 1.27217 1.21936 0.92844 0.93077 1.25802 0.97124
0.97428 0.98120 1.70774 1.24805 1.21268 1.37862 0.83471 0.75523
0.75279 0.75496 1.21481 1.20867 1.21514 0.90932 0.91227 0.91864
0.89836 0.90205 0.86598 0.86102 0.85768 0.83744 0.92175 0.86939
0.93055 0.92796 0.91432 0.94900 0.96208 0.92255
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.45 7.83 37.16 0.29 -1.16 16
2 C 0.08 0.91 3.98 -66.31 -0.26 0.64 16
3 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16
4 C -0.10 -1.09 6.50 -26.61 -0.17 -1.27 16
5 C -0.15 -1.99 6.23 -104.04 -0.65 -2.63 16
6 C -0.10 -1.19 10.03 -39.67 -0.40 -1.59 16
7 C -0.14 -1.65 10.06 -39.53 -0.40 -2.05 16
8 C -0.11 -1.56 10.02 -39.68 -0.40 -1.96 16
9 C -0.10 -1.70 9.27 -39.27 -0.36 -2.06 16
10 C 0.10 1.61 5.23 -83.40 -0.44 1.18 16
11 N -0.47 -7.56 4.62 -162.93 -0.75 -8.31 16
12 C 0.03 0.52 3.14 -4.98 -0.02 0.50 16
13 C 0.51 10.81 7.29 -10.99 -0.08 10.73 16
14 O -0.52 -13.20 13.21 5.55 0.07 -13.13 16
15 N -0.60 -13.02 2.86 -182.96 -0.52 -13.55 16
16 C 0.09 1.38 10.31 59.84 0.62 1.99 16
17 C 0.24 6.27 4.52 -5.19 -0.02 6.25 16
18 C -0.60 -17.54 9.39 -34.44 -0.32 -17.86 16
19 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16
20 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16
21 N -0.91 -28.07 13.65 55.43 0.76 -27.31 16
22 Si 1.07 26.00 29.90 -169.99 -5.08 20.91 16
23 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16
24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
26 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16
27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
28 H 0.06 0.55 6.63 -51.93 -0.34 0.20 16
29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16
31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16
32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16
33 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16
34 H 0.14 2.95 5.90 -52.49 -0.31 2.64 16
35 H 0.06 0.86 6.88 -51.93 -0.36 0.50 16
36 H 0.11 1.56 5.35 -51.93 -0.28 1.28 16
37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.05 0.68 6.27 -51.93 -0.33 0.35 16
39 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16
40 H 0.03 0.96 7.29 -51.93 -0.38 0.59 16
41 H 0.02 0.52 7.76 -51.93 -0.40 0.12 16
42 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16
LS Contribution 336.09 15.07 5.06 5.06
Total: -1.00 -34.98 336.09 -9.25 -44.22
By element:
Atomic # 1 Polarization: 6.99 SS G_CDS: -6.07 Total: 0.92 kcal
Atomic # 6 Polarization: -6.11 SS G_CDS: -2.71 Total: -8.82 kcal
Atomic # 7 Polarization: -48.65 SS G_CDS: -0.52 Total: -49.17 kcal
Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.13 kcal
Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.91 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -34.98 -9.25 -44.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000016382021.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.535 kcal
(2) G-P(sol) polarization free energy of solvation -34.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.222 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.313 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds