Wall clock time and date at job start Tue Mar 31 2020 03:38:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09006 * 110.83772 * 2 1
4 4 C 1.54599 * 110.77788 * 236.60098 * 2 1 3
5 5 C 1.51576 * 102.83111 * 216.18079 * 4 2 1
6 6 C 1.37918 * 131.55736 * 196.33103 * 5 4 2
7 7 C 1.38305 * 120.07964 * 179.27670 * 6 5 4
8 8 C 1.38305 * 119.88054 * 0.02562 * 7 6 5
9 9 C 1.37904 * 120.26804 * 0.13652 * 8 7 6
10 10 C 1.38961 * 107.95727 * 15.94463 * 5 4 2
11 11 N 1.40044 * 110.95814 * 0.79412 * 10 5 4
12 12 C 1.46892 * 111.00389 * 103.39611 * 11 10 5
13 13 C 1.50699 * 109.47271 * 76.24470 * 12 11 10
14 14 O 1.21291 * 119.99824 * 6.35397 * 13 12 11
15 15 N 1.34776 * 120.00311 * 186.34539 * 13 12 11
16 16 C 1.46495 * 120.00018 * 0.02562 * 15 13 12
17 17 C 1.46505 * 119.99870 * 180.02562 * 15 13 12
18 18 C 1.50702 * 109.47284 * 90.00055 * 17 15 13
19 19 H 1.07999 * 119.99774 * 359.97438 * 18 17 15
20 20 C 1.37871 * 120.00127 * 179.97438 * 18 17 15
21 21 N 1.31517 * 119.99869 * 0.02562 * 20 18 17
22 22 Si 1.86796 * 119.99954 * 180.02562 * 20 18 17
23 23 H 1.48503 * 109.47444 * 90.00160 * 22 20 18
24 24 H 1.48506 * 109.46942 * 210.00256 * 22 20 18
25 25 H 1.48501 * 109.47049 * 329.99895 * 22 20 18
26 26 H 1.08999 * 109.47078 * 296.60396 * 1 2 3
27 27 H 1.09002 * 109.47120 * 56.60497 * 1 2 3
28 28 H 1.09000 * 109.46995 * 176.60568 * 1 2 3
29 29 H 1.08997 * 110.73981 * 97.84793 * 4 2 1
30 30 H 1.08991 * 110.89550 * 334.58538 * 4 2 1
31 31 H 1.07996 * 119.96247 * 359.29825 * 6 5 4
32 32 H 1.07998 * 120.05763 * 179.97438 * 7 6 5
33 33 H 1.08006 * 119.86238 * 180.16204 * 8 7 6
34 34 H 1.07997 * 119.90098 * 180.02562 * 9 8 7
35 35 H 1.09002 * 109.47528 * 316.25167 * 12 11 10
36 36 H 1.09002 * 109.47577 * 196.24891 * 12 11 10
37 37 H 1.09001 * 109.46738 * 269.99675 * 16 15 13
38 38 H 1.08997 * 109.47003 * 29.99379 * 16 15 13
39 39 H 1.08994 * 109.47058 * 149.99927 * 16 15 13
40 40 H 1.08999 * 109.47377 * 330.00004 * 17 15 13
41 41 H 1.08995 * 109.47110 * 210.00275 * 17 15 13
42 42 H 0.96992 * 120.00036 * 0.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9178 1.0188 0.0000
4 6 2.0785 -0.7957 -1.2067
5 6 3.3132 -1.4644 -0.6359
6 6 4.3952 -2.0622 -1.2474
7 6 5.4167 -2.5951 -0.4823
8 6 5.3511 -2.5279 0.8976
9 6 4.2698 -1.9341 1.5140
10 6 3.2351 -1.3967 0.7498
11 7 2.0547 -0.7612 1.1546
12 6 1.0680 -1.7385 1.6331
13 6 1.4512 -2.2044 3.0141
14 8 2.3804 -1.6831 3.5938
15 7 0.7614 -3.2001 3.6050
16 6 -0.3606 -3.8299 2.9047
17 6 1.1337 -3.6526 4.9478
18 6 0.3727 -2.8554 5.9756
19 1 -0.3188 -2.0881 5.6601
20 6 0.5592 -3.1055 7.3185
21 7 1.4016 -4.0395 7.7026
22 14 -0.3847 -2.1179 8.5924
23 1 -1.6676 -2.8010 8.8975
24 1 0.4247 -2.0078 9.8326
25 1 -0.6616 -0.7595 8.0599
26 1 -0.3633 0.4602 0.9189
27 1 -0.3633 0.5656 -0.8580
28 1 -0.3633 -1.0259 -0.0608
29 1 2.3455 -0.1241 -2.0227
30 1 1.3565 -1.5402 -1.5420
31 1 4.4451 -2.1141 -2.3250
32 1 6.2637 -3.0635 -0.9615
33 1 6.1503 -2.9417 1.4947
34 1 4.2249 -1.8845 2.5919
35 1 1.0437 -2.5920 0.9555
36 1 0.0827 -1.2734 1.6669
37 1 -1.2817 -3.2973 3.1414
38 1 -0.1851 -3.7921 1.8296
39 1 -0.4498 -4.8688 3.2220
40 1 2.2040 -3.5087 5.0960
41 1 0.8910 -4.7097 5.0552
42 1 1.8920 -4.5521 7.0411
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000016382021.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:32
Heat of formation + Delta-G solvation = -4.762181 kcal
Electronic energy + Delta-G solvation = -23364.884384 eV
Core-core repulsion = 20116.552060 eV
Total energy + Delta-G solvation = -3248.332324 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 288.158 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.19780 -40.30650 -38.07848 -36.74493 -34.98399 -33.40319 -32.16743 -31.11309
-29.60531 -27.92268 -27.34312 -26.84543 -24.82443 -22.93431 -22.26592 -21.49139
-20.16290 -19.08852 -18.24585 -17.95274 -17.01811 -16.78528 -16.51958 -16.36726
-15.76301 -15.54835 -15.31468 -14.94637 -14.41217 -14.29786 -14.10823 -13.91894
-13.76372 -13.61167 -13.37969 -13.23318 -13.07859 -12.89750 -12.82271 -12.61809
-12.46375 -12.15718 -12.00623 -12.00196 -11.74193 -11.21213 -10.72902 -10.62822
-10.25986 -9.75233 -9.46737 -8.87138 -8.71285 -6.47139 0.32665 0.43211
1.46846 1.57920 1.74523 1.76696 2.08976 2.51631 2.68793 2.82583
3.07974 3.55333 3.64679 3.77417 3.88421 4.04133 4.12837 4.16118
4.21246 4.32312 4.33705 4.52422 4.53532 4.58337 4.66792 4.68985
4.74992 4.82920 4.83933 4.89941 4.93625 5.09418 5.17447 5.24746
5.44361 5.51700 5.52656 5.59975 5.80005 5.82155 5.93139 6.13307
6.30591 6.42577 6.66639 7.28536 7.43500 8.63138
Molecular weight = 288.16amu
Principal moments of inertia in cm(-1)
A = 0.020851 B = 0.004526 C = 0.004082
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1342.539303 B = 6184.828919 C = 6858.469934
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.074 3.926
3 H 0.096 0.904
4 C -0.094 4.094
5 C -0.146 4.146
6 C -0.093 4.093
7 C -0.128 4.128
8 C -0.122 4.122
9 C -0.137 4.137
10 C 0.072 3.928
11 N -0.504 5.504
12 C 0.053 3.947
13 C 0.491 3.509
14 O -0.573 6.573
15 N -0.611 5.611
16 C 0.080 3.920
17 C 0.249 3.751
18 C -0.615 4.615
19 H 0.044 0.956
20 C -0.032 4.032
21 N -0.932 5.932
22 Si 1.122 2.878
23 H -0.260 1.260
24 H -0.282 1.282
25 H -0.280 1.280
26 H 0.058 0.942
27 H 0.098 0.902
28 H 0.073 0.927
29 H 0.110 0.890
30 H 0.100 0.900
31 H 0.155 0.845
32 H 0.155 0.845
33 H 0.129 0.871
34 H 0.095 0.905
35 H 0.083 0.917
36 H 0.137 0.863
37 H 0.062 0.938
38 H 0.096 0.904
39 H 0.070 0.930
40 H -0.012 1.012
41 H 0.018 0.982
42 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.033 3.958 -24.415 24.817
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.032 4.032
3 H 0.114 0.886
4 C -0.131 4.131
5 C -0.149 4.149
6 C -0.111 4.111
7 C -0.147 4.147
8 C -0.140 4.140
9 C -0.157 4.157
10 C -0.024 4.024
11 N -0.222 5.222
12 C -0.076 4.076
13 C 0.280 3.720
14 O -0.452 6.452
15 N -0.343 5.343
16 C -0.062 4.062
17 C 0.127 3.873
18 C -0.653 4.653
19 H 0.063 0.937
20 C -0.230 4.230
21 N -0.569 5.569
22 Si 0.943 3.057
23 H -0.185 1.185
24 H -0.207 1.207
25 H -0.205 1.205
26 H 0.077 0.923
27 H 0.117 0.883
28 H 0.092 0.908
29 H 0.128 0.872
30 H 0.119 0.881
31 H 0.172 0.828
32 H 0.172 0.828
33 H 0.147 0.853
34 H 0.113 0.887
35 H 0.101 0.899
36 H 0.155 0.845
37 H 0.081 0.919
38 H 0.114 0.886
39 H 0.089 0.911
40 H 0.006 0.994
41 H 0.036 0.964
42 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -1.762 4.761 -22.056 22.633
hybrid contribution 0.639 -0.893 -1.222 1.643
sum -1.123 3.868 -23.279 23.624
Atomic orbital electron populations
1.22122 0.91609 1.03666 1.03807 1.22911 0.96937 0.97681 0.85701
0.88640 1.21800 0.93356 0.99427 0.98544 1.21410 0.98617 1.01447
0.93422 1.20758 0.92086 0.97159 1.01129 1.21404 1.00038 1.00511
0.92703 1.21174 0.97329 0.99312 0.96220 1.20998 0.94259 1.00574
0.99837 1.19623 0.92668 0.96845 0.93280 1.59681 1.02574 1.24324
1.35627 1.22237 0.97815 0.95824 0.91688 1.21276 0.82344 0.79316
0.89096 1.90589 1.31253 1.56450 1.66925 1.48019 1.33115 1.35954
1.17248 1.21935 0.88437 0.98523 0.97344 1.18844 0.94148 0.93962
0.80341 1.22541 1.27070 1.21855 0.93836 0.93746 1.27393 0.97209
0.97580 1.00824 1.70896 1.26013 1.22489 1.37485 0.82877 0.75385
0.74449 0.72998 1.18500 1.20747 1.20522 0.92264 0.88294 0.90817
0.87179 0.88138 0.82786 0.82753 0.85262 0.88711 0.89912 0.84509
0.91936 0.88552 0.91129 0.99353 0.96435 0.93661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.28 7.83 71.98 0.56 -1.71 16
2 C 0.07 1.53 3.98 45.27 0.18 1.71 16
3 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16
4 C -0.09 -1.55 6.50 30.67 0.20 -1.35 16
5 C -0.15 -3.55 6.23 -19.49 -0.12 -3.67 16
6 C -0.09 -1.92 10.03 22.21 0.22 -1.69 16
7 C -0.13 -2.86 10.06 22.30 0.22 -2.63 16
8 C -0.12 -3.60 10.02 22.21 0.22 -3.37 16
9 C -0.14 -5.12 9.27 22.47 0.21 -4.92 16
10 C 0.07 2.36 5.23 38.28 0.20 2.56 16
11 N -0.50 -16.02 4.62 -669.38 -3.09 -19.11 16
12 C 0.05 1.62 3.14 85.56 0.27 1.89 16
13 C 0.49 21.85 7.29 87.66 0.64 22.49 16
14 O -0.57 -31.59 13.21 -3.06 -0.04 -31.63 16
15 N -0.61 -27.18 2.86 -851.14 -2.43 -29.61 16
16 C 0.08 2.45 10.31 127.77 1.32 3.77 16
17 C 0.25 13.91 4.52 85.63 0.39 14.29 16
18 C -0.61 -36.93 9.39 25.60 0.24 -36.69 16
19 H 0.04 2.67 7.81 -2.91 -0.02 2.64 16
20 C -0.03 -1.93 5.46 84.65 0.46 -1.47 16
21 N -0.93 -59.48 13.65 21.45 0.29 -59.19 16
22 Si 1.12 52.63 29.90 68.60 2.05 54.68 16
23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16
25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16
26 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16
27 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16
28 H 0.07 0.94 6.63 -2.39 -0.02 0.92 16
29 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16
30 H 0.10 1.31 7.87 -2.39 -0.02 1.29 16
31 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16
32 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16
33 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16
34 H 0.09 4.44 5.90 -2.91 -0.02 4.42 16
35 H 0.08 2.15 6.88 -2.39 -0.02 2.13 16
36 H 0.14 3.49 5.35 -2.39 -0.01 3.47 16
37 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16
38 H 0.10 2.12 6.27 -2.39 -0.01 2.11 16
39 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16
40 H -0.01 -0.74 7.29 -2.39 -0.02 -0.76 16
41 H 0.02 0.98 7.76 -2.39 -0.02 0.96 16
42 H 0.25 16.46 7.22 -92.71 -0.67 15.79 16
Total: -1.00 -83.56 336.09 3.11 -80.45
By element:
Atomic # 1 Polarization: 14.09 SS G_CDS: 1.11 Total: 15.20 kcal
Atomic # 6 Polarization: -16.01 SS G_CDS: 5.21 Total: -10.80 kcal
Atomic # 7 Polarization: -102.68 SS G_CDS: -5.23 Total: -107.91 kcal
Atomic # 8 Polarization: -31.59 SS G_CDS: -0.04 Total: -31.63 kcal
Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.68 kcal
Total: -83.56 3.11 -80.45 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000016382021.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.690 kcal
(2) G-P(sol) polarization free energy of solvation -83.557 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.867 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds