Wall clock time and date at job start Tue Mar 31 2020 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39259 * 119.78533 * 2 1 4 4 C 1.38158 * 119.01821 * 180.24944 * 3 2 1 5 5 N 1.37711 * 120.64244 * 179.77392 * 4 3 2 6 6 C 1.46897 * 111.00076 * 359.72112 * 5 4 3 7 7 C 1.53247 * 109.33862 * 187.25079 * 6 5 4 8 8 N 1.47074 * 108.51990 * 306.16776 * 7 6 5 9 9 C 1.36942 * 120.88247 * 231.18498 * 8 7 6 10 10 H 1.08002 * 119.99420 * 27.10940 * 9 8 7 11 11 C 1.38813 * 120.00143 * 207.11011 * 9 8 7 12 12 N 1.31617 * 119.99715 * 16.76771 * 11 9 8 13 13 Si 1.86795 * 119.99947 * 196.77399 * 11 9 8 14 14 H 1.48494 * 109.47132 * 179.97438 * 13 11 9 15 15 H 1.48507 * 109.47079 * 299.99798 * 13 11 9 16 16 H 1.48501 * 109.47054 * 59.99515 * 13 11 9 17 17 C 1.47078 * 118.23813 * 51.45896 * 8 7 6 18 18 C 1.46903 * 110.99829 * 124.02118 * 5 4 3 19 19 N 1.36514 * 118.71076 * 359.49893 * 4 3 2 20 20 N 1.40063 * 133.37572 * 180.25295 * 19 4 3 21 21 C 1.31064 * 107.03833 * 180.02562 * 20 19 4 22 22 N 1.32736 * 109.62802 * 0.02562 * 21 20 19 23 23 C 1.32855 * 109.73468 * 0.02562 * 22 21 20 24 24 N 1.31657 * 119.78595 * 179.74084 * 2 1 3 25 25 H 1.09005 * 109.47369 * 270.25623 * 1 2 3 26 26 H 1.09004 * 109.47155 * 30.25946 * 1 2 3 27 27 H 1.08997 * 109.47073 * 150.25596 * 1 2 3 28 28 H 1.08004 * 120.49199 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.49264 * 67.29199 * 6 5 4 30 30 H 1.08999 * 109.49345 * 307.20914 * 6 5 4 31 31 H 1.09000 * 109.62236 * 186.45985 * 7 6 5 32 32 H 1.08996 * 109.62383 * 65.88170 * 7 6 5 33 33 H 0.97002 * 119.99529 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.62879 * 68.24716 * 17 8 7 35 35 H 1.09001 * 109.63018 * 188.82828 * 17 8 7 36 36 H 1.09007 * 109.49038 * 292.70741 * 18 5 4 37 37 H 1.08997 * 109.49035 * 52.78642 * 18 5 4 38 38 H 1.07997 * 125.19251 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.2086 0.0000 4 6 3.5802 1.1901 -0.0053 5 7 4.2978 2.3654 -0.0101 6 6 3.4017 3.5294 -0.0154 7 6 4.2289 4.8058 -0.2032 8 7 5.2812 4.8358 0.8238 9 6 5.4628 5.9408 1.6121 10 1 4.6323 6.5999 1.8174 11 6 6.7143 6.2137 2.1471 12 7 7.7837 5.6277 1.6518 13 14 6.8806 7.4125 3.5699 14 1 8.3101 7.5288 3.9547 15 1 6.3685 8.7441 3.1577 16 1 6.0951 6.9172 4.7288 17 6 6.1374 3.6499 0.9778 18 6 5.2314 2.4169 1.1230 19 7 4.2199 -0.0158 0.0002 20 7 5.5700 -0.3885 0.0019 21 6 5.6068 -1.6986 0.0072 22 7 4.3696 -2.1794 0.0085 23 6 3.4985 -1.1763 0.0033 24 7 2.1610 -1.1426 0.0052 25 1 -0.3634 0.0046 1.0277 26 1 -0.3634 0.8877 -0.5179 27 1 -0.3633 -0.8922 -0.5098 28 1 1.6632 2.1466 0.0004 29 1 2.8652 3.5798 0.9321 30 1 2.6878 3.4351 -0.8336 31 1 3.5852 5.6786 -0.0935 32 1 4.6837 4.8048 -1.1937 33 1 8.6582 5.8187 2.0254 34 1 6.7722 3.5399 0.0985 35 1 6.7562 3.7581 1.8685 36 1 4.6694 2.4827 2.0546 37 1 5.8443 1.5156 1.1303 38 1 6.5065 -2.2960 0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029722087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:46 Heat of formation + Delta-G solvation = 184.137844 kcal Electronic energy + Delta-G solvation = -23097.377636 eV Core-core repulsion = 19785.989040 eV Total energy + Delta-G solvation = -3311.388596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.80922 -39.74627 -38.16085 -35.41769 -33.42456 -32.17506 -31.39717 -30.88585 -29.64212 -28.39948 -26.85673 -24.53140 -23.43806 -22.80278 -22.29373 -21.36379 -19.63952 -18.30410 -17.74806 -17.25955 -16.53096 -16.20289 -15.07415 -14.83107 -14.76094 -14.45493 -14.11394 -13.98161 -13.69279 -13.39715 -13.17914 -13.06095 -12.62448 -12.43115 -11.95725 -11.84019 -11.73063 -11.31806 -10.88972 -10.82332 -10.71918 -10.38971 -10.10613 -10.03600 -10.00062 -9.83813 -9.63262 -9.29732 -8.66758 -8.07112 -6.92539 -5.96011 -3.40044 0.54924 0.82341 1.85110 2.63337 3.27182 3.29076 3.35351 3.35746 3.42930 3.58047 4.13602 4.34500 4.55588 4.69005 4.96177 5.03716 5.17852 5.19606 5.28600 5.31148 5.40029 5.45687 5.53533 5.67397 5.73656 5.83141 5.94183 6.08010 6.09235 6.25620 6.33171 6.39872 6.58956 6.79828 6.92700 7.15847 7.40624 7.60567 7.62389 8.04522 8.22598 9.00027 9.62553 10.19103 11.13222 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.004581 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.010736 B = 6111.266995 C = 6887.124248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.253 3.747 3 C -0.307 4.307 4 C 0.418 3.582 5 N -0.467 5.467 6 C 0.037 3.963 7 C 0.146 3.854 8 N -0.594 5.594 9 C -0.263 4.263 10 H 0.070 0.930 11 C 0.006 3.994 12 N -0.901 5.901 13 Si 0.906 3.094 14 H -0.289 1.289 15 H -0.281 1.281 16 H -0.283 1.283 17 C 0.180 3.820 18 C 0.031 3.969 19 N -0.339 5.339 20 N -0.329 5.329 21 C 0.246 3.754 22 N -0.542 5.542 23 C 0.470 3.530 24 N -0.500 5.500 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.172 0.828 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.258 0.742 34 H 0.035 0.965 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 -8.481 -2.811 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 C -0.338 4.338 4 C 0.197 3.803 5 N -0.179 5.179 6 C -0.090 4.090 7 C 0.019 3.981 8 N -0.317 5.317 9 C -0.392 4.392 10 H 0.087 0.913 11 C -0.193 4.193 12 N -0.544 5.544 13 Si 0.735 3.265 14 H -0.215 1.215 15 H -0.207 1.207 16 H -0.209 1.209 17 C 0.053 3.947 18 C -0.094 4.094 19 N -0.123 5.123 20 N -0.159 5.159 21 C -0.056 4.056 22 N -0.276 5.276 23 C 0.110 3.890 24 N -0.221 5.221 25 H 0.110 0.890 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.189 0.811 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.915 -9.195 -3.150 14.616 hybrid contribution 0.284 1.329 1.093 1.744 sum -10.631 -7.866 -2.057 13.384 Atomic orbital electron populations 1.20827 0.86715 1.04514 1.04193 1.21615 0.97575 0.86562 0.85009 1.21855 0.89968 1.01770 1.20173 1.19636 0.89380 0.82997 0.88308 1.57889 1.18536 0.99531 1.41944 1.23164 0.94579 0.89832 1.01461 1.21040 0.91290 0.92726 0.93074 1.44186 1.36412 1.13493 1.37641 1.19136 0.93574 1.03057 1.23408 0.91274 1.25081 0.95174 0.98815 1.00249 1.69994 0.97691 1.45835 1.40916 0.86321 0.76841 0.80854 0.82450 1.21480 1.20704 1.20939 1.21029 0.90270 0.80967 1.02407 1.23471 0.94551 1.04411 0.86929 1.48773 1.07803 1.06887 1.48818 1.78536 0.90448 1.14726 1.32202 1.26273 0.96148 0.89757 0.93451 1.70921 0.98812 1.26433 1.31450 1.22802 0.89957 0.81344 0.94947 1.67789 1.01734 1.28513 1.24103 0.89028 0.89437 0.89483 0.81109 0.92140 0.89932 0.91082 0.95108 0.93233 0.94736 0.88248 0.93502 0.89102 0.75511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.18 36.00 0.37 -0.38 16 2 C 0.25 3.05 6.81 -82.29 -0.56 2.49 16 3 C -0.31 -3.82 8.52 -39.23 -0.33 -4.16 16 4 C 0.42 6.71 6.50 -152.98 -0.99 5.72 16 5 N -0.47 -8.06 4.67 -172.13 -0.80 -8.87 16 6 C 0.04 0.56 4.29 -3.70 -0.02 0.54 16 7 C 0.15 2.72 6.69 -3.60 -0.02 2.70 16 8 N -0.59 -13.88 3.03 -171.73 -0.52 -14.40 16 9 C -0.26 -6.74 9.63 -15.06 -0.14 -6.89 16 10 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 11 C 0.01 0.16 4.94 -17.43 -0.09 0.08 16 12 N -0.90 -25.10 11.15 55.49 0.62 -24.48 16 13 Si 0.91 20.69 29.59 -169.99 -5.03 15.67 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 C 0.18 4.13 5.44 -3.37 -0.02 4.12 16 18 C 0.03 0.60 5.50 -3.46 -0.02 0.59 16 19 N -0.34 -5.96 3.74 -12.98 -0.05 -6.00 16 20 N -0.33 -5.77 10.84 29.26 0.32 -5.46 16 21 C 0.25 3.68 12.98 -91.96 -1.19 2.49 16 22 N -0.54 -9.34 11.26 -15.66 -0.18 -9.51 16 23 C 0.47 8.24 8.99 -323.16 -2.91 5.33 16 24 N -0.50 -7.81 10.38 -10.18 -0.11 -7.92 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.17 1.61 5.86 -52.48 -0.31 1.30 16 29 H 0.06 0.87 7.81 -51.93 -0.41 0.47 16 30 H 0.08 0.97 6.90 -51.93 -0.36 0.61 16 31 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.54 6.13 -51.93 -0.32 2.23 16 36 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 37 H 0.09 1.78 5.96 -51.93 -0.31 1.47 16 38 H 0.23 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 310.12 15.07 4.67 4.67 Total: -1.00 -32.25 310.12 -11.62 -43.88 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.62 Total: -0.18 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: -5.93 Total: 12.62 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -0.72 Total: -76.65 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.25 -11.62 -43.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029722087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.016 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds