Wall clock time and date at job start Tue Mar 31 2020 03:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39259 * 119.78533 * 2 1 4 4 C 1.38158 * 119.01821 * 180.24944 * 3 2 1 5 5 N 1.37711 * 120.64244 * 179.77392 * 4 3 2 6 6 C 1.46897 * 111.00076 * 359.72112 * 5 4 3 7 7 C 1.53247 * 109.33862 * 187.25079 * 6 5 4 8 8 N 1.47074 * 108.51990 * 306.16776 * 7 6 5 9 9 C 1.36942 * 120.88247 * 231.18498 * 8 7 6 10 10 H 1.08002 * 119.99420 * 27.10940 * 9 8 7 11 11 C 1.38813 * 120.00143 * 207.11011 * 9 8 7 12 12 N 1.31617 * 119.99715 * 16.76771 * 11 9 8 13 13 Si 1.86795 * 119.99947 * 196.77399 * 11 9 8 14 14 H 1.48494 * 109.47132 * 179.97438 * 13 11 9 15 15 H 1.48507 * 109.47079 * 299.99798 * 13 11 9 16 16 H 1.48501 * 109.47054 * 59.99515 * 13 11 9 17 17 C 1.47078 * 118.23813 * 51.45896 * 8 7 6 18 18 C 1.46903 * 110.99829 * 124.02118 * 5 4 3 19 19 N 1.36514 * 118.71076 * 359.49893 * 4 3 2 20 20 N 1.40063 * 133.37572 * 180.25295 * 19 4 3 21 21 C 1.31064 * 107.03833 * 180.02562 * 20 19 4 22 22 N 1.32736 * 109.62802 * 0.02562 * 21 20 19 23 23 C 1.32855 * 109.73468 * 0.02562 * 22 21 20 24 24 N 1.31657 * 119.78595 * 179.74084 * 2 1 3 25 25 H 1.09005 * 109.47369 * 270.25623 * 1 2 3 26 26 H 1.09004 * 109.47155 * 30.25946 * 1 2 3 27 27 H 1.08997 * 109.47073 * 150.25596 * 1 2 3 28 28 H 1.08004 * 120.49199 * 0.02562 * 3 2 1 29 29 H 1.09004 * 109.49264 * 67.29199 * 6 5 4 30 30 H 1.08999 * 109.49345 * 307.20914 * 6 5 4 31 31 H 1.09000 * 109.62236 * 186.45985 * 7 6 5 32 32 H 1.08996 * 109.62383 * 65.88170 * 7 6 5 33 33 H 0.97002 * 119.99529 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.62879 * 68.24716 * 17 8 7 35 35 H 1.09001 * 109.63018 * 188.82828 * 17 8 7 36 36 H 1.09007 * 109.49038 * 292.70741 * 18 5 4 37 37 H 1.08997 * 109.49035 * 52.78642 * 18 5 4 38 38 H 1.07997 * 125.19251 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1987 1.2086 0.0000 4 6 3.5802 1.1901 -0.0053 5 7 4.2978 2.3654 -0.0101 6 6 3.4017 3.5294 -0.0154 7 6 4.2289 4.8058 -0.2032 8 7 5.2812 4.8358 0.8238 9 6 5.4628 5.9408 1.6121 10 1 4.6323 6.5999 1.8174 11 6 6.7143 6.2137 2.1471 12 7 7.7837 5.6277 1.6518 13 14 6.8806 7.4125 3.5699 14 1 8.3101 7.5288 3.9547 15 1 6.3685 8.7441 3.1577 16 1 6.0951 6.9172 4.7288 17 6 6.1374 3.6499 0.9778 18 6 5.2314 2.4169 1.1230 19 7 4.2199 -0.0158 0.0002 20 7 5.5700 -0.3885 0.0019 21 6 5.6068 -1.6986 0.0072 22 7 4.3696 -2.1794 0.0085 23 6 3.4985 -1.1763 0.0033 24 7 2.1610 -1.1426 0.0052 25 1 -0.3634 0.0046 1.0277 26 1 -0.3634 0.8877 -0.5179 27 1 -0.3633 -0.8922 -0.5098 28 1 1.6632 2.1466 0.0004 29 1 2.8652 3.5798 0.9321 30 1 2.6878 3.4351 -0.8336 31 1 3.5852 5.6786 -0.0935 32 1 4.6837 4.8048 -1.1937 33 1 8.6582 5.8187 2.0254 34 1 6.7722 3.5399 0.0985 35 1 6.7562 3.7581 1.8685 36 1 4.6694 2.4827 2.0546 37 1 5.8443 1.5156 1.1303 38 1 6.5065 -2.2960 0.0102 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029722087.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:46 Heat of formation + Delta-G solvation = 165.736734 kcal Electronic energy + Delta-G solvation = -23098.175568 eV Core-core repulsion = 19785.989040 eV Total energy + Delta-G solvation = -3312.186528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.98106 -41.01257 -39.37351 -36.97944 -34.79112 -33.36315 -32.97915 -32.31929 -30.97463 -29.38919 -28.40677 -25.92645 -25.01088 -24.18424 -23.40989 -22.65684 -21.20126 -19.51338 -18.90151 -18.86500 -17.77419 -17.60698 -16.73594 -16.11704 -16.04959 -15.80162 -15.40393 -15.28746 -15.09008 -14.76695 -14.70628 -14.05197 -13.74447 -13.30573 -13.25605 -13.06933 -13.02938 -12.75251 -12.63320 -12.50452 -12.29551 -12.11818 -11.81929 -11.72841 -11.27786 -11.06140 -10.80572 -10.63839 -10.47385 -9.29614 -8.81680 -7.93691 -5.39758 -0.56618 -0.28621 0.72070 1.47243 1.49219 1.50022 1.56031 2.10278 2.33351 2.44291 2.48653 3.07667 3.24000 3.47449 3.53267 3.69455 3.90690 4.03261 4.06148 4.16585 4.24843 4.29149 4.45592 4.56317 4.69064 4.80499 4.82798 4.86543 4.90138 4.99430 5.16623 5.21424 5.28744 5.38549 5.48580 5.54642 5.63886 5.75422 6.29691 6.48816 6.87917 7.04679 7.74039 8.28035 9.14223 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.004581 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.010736 B = 6111.266995 C = 6887.124248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.256 3.744 3 C -0.278 4.278 4 C 0.386 3.614 5 N -0.483 5.483 6 C 0.046 3.954 7 C 0.140 3.860 8 N -0.612 5.612 9 C -0.265 4.265 10 H 0.081 0.919 11 C -0.050 4.050 12 N -0.938 5.938 13 Si 0.969 3.031 14 H -0.299 1.299 15 H -0.272 1.272 16 H -0.277 1.277 17 C 0.193 3.807 18 C 0.055 3.945 19 N -0.349 5.349 20 N -0.368 5.368 21 C 0.252 3.748 22 N -0.567 5.567 23 C 0.452 3.548 24 N -0.519 5.519 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.089 0.911 28 H 0.211 0.789 29 H 0.074 0.926 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.017 0.983 33 H 0.250 0.750 34 H -0.001 1.001 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 -8.226 -2.812 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 C -0.307 4.307 4 C 0.167 3.833 5 N -0.196 5.196 6 C -0.080 4.080 7 C 0.015 3.985 8 N -0.335 5.335 9 C -0.395 4.395 10 H 0.098 0.902 11 C -0.245 4.245 12 N -0.584 5.584 13 Si 0.797 3.203 14 H -0.226 1.226 15 H -0.197 1.197 16 H -0.203 1.203 17 C 0.066 3.934 18 C -0.071 4.071 19 N -0.132 5.132 20 N -0.198 5.198 21 C -0.049 4.049 22 N -0.303 5.303 23 C 0.091 3.909 24 N -0.241 5.241 25 H 0.129 0.871 26 H 0.140 0.860 27 H 0.108 0.892 28 H 0.228 0.772 29 H 0.093 0.907 30 H 0.145 0.855 31 H 0.107 0.893 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.017 0.983 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -14.584 -8.934 -3.173 17.395 hybrid contribution 1.246 1.199 1.027 2.011 sum -13.339 -7.735 -2.145 15.568 Atomic orbital electron populations 1.21081 0.82635 1.06373 1.05869 1.22530 0.99805 0.85406 0.82534 1.22427 0.88350 1.03596 1.16358 1.19969 0.90499 0.82053 0.90818 1.57749 1.19355 1.00891 1.41623 1.23141 0.93988 0.86978 1.03941 1.21241 0.90533 0.95755 0.91003 1.44432 1.37221 1.12952 1.38924 1.19562 0.93676 1.03223 1.22993 0.90178 1.25846 0.95062 1.00926 1.02712 1.70170 0.97853 1.47909 1.42467 0.85320 0.76061 0.79233 0.79704 1.22554 1.19714 1.20313 1.20609 0.90586 0.83055 0.99154 1.22926 0.94447 1.01628 0.88068 1.48853 1.07715 1.07489 1.49181 1.78459 0.91350 1.16071 1.33928 1.27041 0.96851 0.89362 0.91681 1.70904 0.99624 1.27140 1.32583 1.23165 0.90794 0.81528 0.95369 1.67933 1.00857 1.30372 1.24943 0.87072 0.86009 0.89209 0.77211 0.90736 0.85518 0.89286 0.96459 0.94055 0.98287 0.91594 0.93648 0.90048 0.71703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.18 71.23 0.73 -0.20 16 2 C 0.26 5.22 6.81 42.83 0.29 5.51 16 3 C -0.28 -5.76 8.52 22.50 0.19 -5.57 16 4 C 0.39 11.66 6.50 131.99 0.86 12.52 16 5 N -0.48 -16.09 4.67 -698.51 -3.26 -19.35 16 6 C 0.05 1.22 4.29 86.39 0.37 1.59 16 7 C 0.14 5.02 6.69 86.35 0.58 5.59 16 8 N -0.61 -28.74 3.03 -697.24 -2.11 -30.85 16 9 C -0.26 -13.58 9.63 84.03 0.81 -12.77 16 10 H 0.08 3.85 7.88 -2.91 -0.02 3.83 16 11 C -0.05 -2.68 4.94 84.86 0.42 -2.26 16 12 N -0.94 -54.47 11.15 21.65 0.24 -54.23 16 13 Si 0.97 43.01 29.59 68.60 2.03 45.04 16 14 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 17 C 0.19 9.27 5.44 86.50 0.47 9.74 16 18 C 0.06 2.17 5.50 86.54 0.48 2.65 16 19 N -0.35 -12.10 3.74 -194.99 -0.73 -12.83 16 20 N -0.37 -13.12 10.84 -61.35 -0.67 -13.79 16 21 C 0.25 7.56 12.98 180.82 2.35 9.91 16 22 N -0.57 -19.50 11.26 -203.47 -2.29 -21.79 16 23 C 0.45 15.54 8.99 261.61 2.35 17.89 16 24 N -0.52 -15.21 10.38 -186.13 -1.93 -17.14 16 25 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.12 0.34 8.09 -2.38 -0.02 0.32 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.21 2.56 5.86 -2.91 -0.02 2.54 16 29 H 0.07 1.82 7.81 -2.38 -0.02 1.80 16 30 H 0.13 2.29 6.90 -2.39 -0.02 2.27 16 31 H 0.09 2.83 7.95 -2.39 -0.02 2.81 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.07 3.59 6.13 -2.39 -0.01 3.57 16 36 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.08 3.34 5.96 -2.39 -0.01 3.32 16 38 H 0.27 5.06 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -74.74 310.12 2.26 -72.48 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.09 Total: 7.85 kcal Atomic # 6 Polarization: 34.72 SS G_CDS: 9.89 Total: 44.62 kcal Atomic # 7 Polarization: -159.23 SS G_CDS: -10.75 Total: -169.98 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.74 2.26 -72.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029722087.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.219 kcal (2) G-P(sol) polarization free energy of solvation -74.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds