Wall clock time and date at job start Tue Mar 31 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46987 * 2 1 4 4 C 1.46905 * 110.99765 * 301.59440 * 3 2 1 5 5 C 1.50696 * 109.46980 * 292.85606 * 4 3 2 6 6 H 1.07996 * 120.00377 * 3.06908 * 5 4 3 7 7 C 1.37878 * 120.00033 * 183.06024 * 5 4 3 8 8 N 1.31520 * 119.99893 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47146 * 120.00227 * 9 7 5 12 12 H 1.48497 * 109.47207 * 240.00250 * 9 7 5 13 13 C 1.46904 * 110.99996 * 65.54646 * 3 2 1 14 14 N 1.46495 * 109.47029 * 85.03102 * 13 3 2 15 15 C 1.34531 * 124.45689 * 269.97757 * 14 13 3 16 16 O 1.21447 * 125.71214 * 0.03849 * 15 14 13 17 17 C 1.47817 * 108.57526 * 180.02562 * 15 14 13 18 18 C 1.38570 * 134.28745 * 180.02562 * 17 15 14 19 19 C 1.38616 * 119.71773 * 179.97438 * 18 17 15 20 20 C 1.38227 * 120.45223 * 0.02562 * 19 18 17 21 21 C 1.38609 * 120.46686 * 359.96116 * 20 19 18 22 22 C 1.38567 * 119.71776 * 0.02562 * 21 20 19 23 23 C 1.34522 * 124.46499 * 89.99502 * 14 13 3 24 24 O 1.21452 * 125.70921 * 0.02562 * 23 14 13 25 25 H 1.09001 * 109.46875 * 177.52169 * 1 2 3 26 26 H 1.08997 * 109.47256 * 297.51715 * 1 2 3 27 27 H 1.09004 * 109.46947 * 57.52181 * 1 2 3 28 28 H 1.08997 * 109.47617 * 240.00241 * 2 1 3 29 29 H 1.08997 * 109.47221 * 119.99829 * 2 1 3 30 30 H 1.08993 * 109.47336 * 52.86270 * 4 3 2 31 31 H 1.09004 * 109.46922 * 172.85935 * 4 3 2 32 32 H 0.96999 * 120.00075 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.46774 * 325.02800 * 13 3 2 34 34 H 1.08997 * 109.47147 * 205.02781 * 13 3 2 35 35 H 1.08000 * 120.14364 * 359.66857 * 18 17 15 36 36 H 1.07993 * 119.76982 * 179.97438 * 19 18 17 37 37 H 1.08004 * 119.76622 * 179.97438 * 20 19 18 38 38 H 1.07999 * 120.13891 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5176 2.1208 -1.1682 5 6 2.1280 1.5495 -2.4220 6 1 2.7808 0.6912 -2.3622 7 6 1.8529 2.1224 -3.6456 8 7 1.0582 3.1678 -3.7184 9 14 2.6089 1.4137 -5.1998 10 1 3.4585 0.2472 -4.8496 11 1 1.5291 0.9799 -6.1222 12 1 3.4398 2.4504 -5.8633 13 6 1.6598 2.0706 1.2484 14 7 2.6672 1.7816 2.2720 15 6 2.6095 0.7428 3.1249 16 8 1.7280 -0.0916 3.1672 17 6 3.7988 0.7867 4.0017 18 6 4.2644 -0.0027 5.0410 19 6 5.4540 0.3245 5.6727 20 6 6.1777 1.4324 5.2733 21 6 5.7244 2.2310 4.2351 22 6 4.5370 1.9160 3.5941 23 6 3.7716 2.5202 2.4832 24 8 4.0865 3.5172 1.8653 25 1 -0.3633 -1.0267 -0.0444 26 1 -0.3633 0.4748 0.9114 27 1 -0.3633 0.5519 -0.8670 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.4328 2.0281 -1.2173 31 1 1.7887 3.1728 -1.0789 32 1 0.8650 3.5710 -4.5792 33 1 0.6855 1.7193 1.5880 34 1 1.6177 3.1456 1.0735 35 1 3.7003 -0.8665 5.3607 36 1 5.8174 -0.2900 6.4831 37 1 7.1030 1.6773 5.7737 38 1 6.2943 3.0952 3.9271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049389435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:51 Heat of formation + Delta-G solvation = -23.808019 kcal Electronic energy + Delta-G solvation = -22739.868334 eV Core-core repulsion = 19354.877026 eV Total energy + Delta-G solvation = -3384.991308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.33169 -39.78356 -39.63929 -38.65211 -36.75393 -34.77485 -32.78593 -32.07248 -31.08926 -29.26161 -26.82431 -26.15117 -25.18113 -23.93043 -23.12141 -21.63842 -20.70381 -18.78165 -18.59334 -18.20135 -17.93847 -17.13035 -16.88713 -16.50577 -16.32288 -15.87170 -15.62940 -15.36459 -15.13581 -14.99618 -14.85527 -14.33284 -13.75372 -13.68066 -13.27130 -13.19494 -13.13660 -12.85188 -12.68735 -12.60986 -12.55248 -11.99192 -11.79881 -11.63920 -11.41531 -11.38058 -11.00876 -10.63164 -10.16975 -10.16051 -9.23319 -8.23308 -6.32624 -0.96510 0.04108 1.03554 1.24875 1.38205 1.39311 1.52506 1.88353 2.38104 2.62201 2.68498 3.07686 3.16656 3.29784 3.65237 3.76474 4.07087 4.10617 4.13486 4.23102 4.27453 4.33720 4.38033 4.52521 4.56725 4.79159 4.89023 4.89971 4.99698 5.08833 5.21902 5.26164 5.30945 5.38393 5.59131 5.61621 5.75767 5.94842 6.14403 6.19226 6.38699 6.59624 6.79864 7.35878 8.87914 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022815 B = 0.004322 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.965056 B = 6476.621264 C = 6991.751732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 N -0.558 5.558 4 C 0.211 3.789 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.273 3.727 14 N -0.571 5.571 15 C 0.570 3.430 16 O -0.490 6.490 17 C -0.157 4.157 18 C -0.043 4.043 19 C -0.081 4.081 20 C -0.081 4.081 21 C -0.049 4.049 22 C -0.158 4.158 23 C 0.567 3.433 24 O -0.500 6.500 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.066 0.934 30 H -0.006 1.006 31 H 0.001 0.999 32 H 0.265 0.735 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.360 -6.562 22.603 25.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.063 4.063 3 N -0.284 5.284 4 C 0.086 3.914 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.200 1.200 12 H -0.205 1.205 13 C 0.062 3.938 14 N -0.313 5.313 15 C 0.362 3.638 16 O -0.363 6.363 17 C -0.161 4.161 18 C -0.062 4.062 19 C -0.099 4.099 20 C -0.098 4.098 21 C -0.067 4.067 22 C -0.161 4.161 23 C 0.358 3.642 24 O -0.373 6.373 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.012 0.988 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.175 0.825 36 H 0.203 0.797 37 H 0.201 0.799 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.408 -6.336 22.059 24.804 hybrid contribution -1.093 0.300 -1.547 1.917 sum 8.315 -6.036 20.512 22.942 Atomic orbital electron populations 1.22215 0.97330 1.02726 1.00987 1.21987 0.93889 0.89155 1.01259 1.61821 1.60965 1.03552 1.02019 1.19436 0.93246 0.92116 0.86618 1.21371 1.28600 1.14477 0.91513 0.92444 1.25842 0.95655 0.95257 1.02524 1.70075 1.37677 1.23140 1.26238 0.85345 0.78301 0.78396 0.78640 1.19086 1.20009 1.20489 1.22035 0.88428 0.99311 0.84021 1.46897 1.24176 1.27609 1.32637 1.18903 0.86011 0.79162 0.79771 1.90743 1.39026 1.36923 1.69653 1.20540 0.95529 0.99423 1.00579 1.21186 0.96205 0.97765 0.91006 1.21978 0.92115 0.96641 0.99122 1.21956 1.00860 0.92985 0.94028 1.21169 0.91710 1.00013 0.93826 1.20530 0.99105 0.98185 0.98304 1.19049 0.80266 0.82038 0.82846 1.90777 1.70292 1.24674 1.51590 0.90679 0.92801 0.93405 0.91636 0.91606 0.98819 0.98063 0.92588 0.89676 0.89386 0.82466 0.79745 0.79948 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.64 9.32 71.98 0.67 -5.97 16 2 C 0.06 2.73 5.84 86.30 0.50 3.23 16 3 N -0.56 -26.16 4.79 -913.17 -4.37 -30.53 16 4 C 0.21 11.61 4.42 85.55 0.38 11.99 16 5 C -0.52 -30.49 8.61 25.60 0.22 -30.27 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 9 Si 0.97 45.56 29.54 68.60 2.03 47.58 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.27 11.11 5.47 170.81 0.93 12.05 16 14 N -0.57 -20.94 2.86 -773.35 -2.22 -23.16 16 15 C 0.57 18.54 7.48 86.82 0.65 19.19 16 16 O -0.49 -17.27 16.27 -3.55 -0.06 -17.33 16 17 C -0.16 -3.84 6.40 -20.00 -0.13 -3.97 16 18 C -0.04 -0.64 10.09 22.44 0.23 -0.41 16 19 C -0.08 -0.61 10.04 22.36 0.22 -0.39 16 20 C -0.08 -0.67 10.03 22.36 0.22 -0.45 16 21 C -0.05 -0.82 10.09 22.44 0.23 -0.59 16 22 C -0.16 -4.09 6.41 -20.00 -0.13 -4.22 16 23 C 0.57 20.46 8.02 86.82 0.70 21.16 16 24 O -0.50 -21.49 17.68 -3.56 -0.06 -21.55 16 25 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.05 1.93 6.30 -2.39 -0.02 1.91 16 27 H 0.05 2.06 6.09 -2.39 -0.01 2.05 16 28 H 0.07 2.94 6.92 -2.39 -0.02 2.93 16 29 H 0.07 2.63 6.02 -2.39 -0.01 2.62 16 30 H -0.01 -0.32 5.85 -2.39 -0.01 -0.34 16 31 H 0.00 0.08 7.76 -2.39 -0.02 0.06 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.09 3.23 5.65 -2.39 -0.01 3.21 16 34 H 0.09 3.75 7.38 -2.39 -0.02 3.73 16 35 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.19 -0.15 8.06 -2.91 -0.02 -0.17 16 37 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -76.45 321.13 1.85 -74.59 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.09 Total: 4.78 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 5.16 Total: 22.13 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -6.31 Total: -110.20 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.12 Total: -38.88 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.45 1.85 -74.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049389435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.785 kcal (2) G-P(sol) polarization free energy of solvation -76.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds