Wall clock time and date at job start Tue Mar 31 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46823 * 2 1 4 4 C 1.36825 * 119.99770 * 262.56566 * 3 2 1 5 5 H 1.08004 * 119.99991 * 186.62857 * 4 3 2 6 6 C 1.39044 * 120.00085 * 6.62918 * 4 3 2 7 7 N 1.31370 * 119.99889 * 33.63662 * 6 4 3 8 8 Si 1.86801 * 120.00115 * 213.63826 * 6 4 3 9 9 H 1.48496 * 109.47149 * 95.00081 * 8 6 4 10 10 H 1.48497 * 109.46950 * 215.00018 * 8 6 4 11 11 H 1.48497 * 109.46911 * 334.99592 * 8 6 4 12 12 C 1.34775 * 120.00342 * 82.56054 * 3 2 1 13 13 O 1.21726 * 120.00096 * 181.73440 * 12 3 2 14 14 C 1.46755 * 120.00005 * 1.74505 * 12 3 2 15 15 C 1.36065 * 125.45610 * 168.94559 * 14 12 3 16 16 C 1.41472 * 107.75717 * 180.26383 * 15 14 12 17 17 C 1.40225 * 133.25426 * 180.02562 * 16 15 14 18 18 C 1.36297 * 119.90534 * 179.97438 * 17 16 15 19 19 C 1.39470 * 120.55532 * 359.97438 * 18 17 16 20 20 O 1.35835 * 119.73709 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00076 * 0.02562 * 20 19 18 22 22 C 1.38239 * 120.52463 * 0.02562 * 19 18 17 23 23 C 1.39062 * 119.77427 * 359.96177 * 22 19 18 24 24 N 1.37570 * 133.09161 * 180.02562 * 23 22 19 25 25 H 0.97004 * 125.62930 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47506 * 300.00075 * 1 2 3 27 27 H 1.09003 * 109.46864 * 60.00900 * 1 2 3 28 28 H 1.09007 * 109.46747 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47705 * 239.99711 * 2 1 3 30 30 H 1.09003 * 109.46864 * 119.99100 * 2 1 3 31 31 H 0.97005 * 120.00564 * 179.97438 * 7 6 4 32 32 H 1.07997 * 126.12409 * 0.23453 * 15 14 12 33 33 H 1.07999 * 120.04278 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.72253 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.47123 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.46802 * 299.99293 * 21 20 19 37 37 H 1.08991 * 109.47514 * 59.99647 * 21 20 19 38 38 H 1.07999 * 120.11413 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3908 1.9751 -1.1750 5 1 2.8503 2.9525 -1.1642 6 6 2.1779 1.3204 -2.3830 7 7 1.1270 0.5467 -2.5345 8 14 3.3860 1.5409 -3.7906 9 1 4.3756 0.4338 -3.7715 10 1 2.6510 1.5256 -5.0808 11 1 4.0918 2.8385 -3.6384 12 6 2.1004 2.0670 1.1573 13 8 2.4761 3.2248 1.1534 14 6 1.7371 1.4178 2.4223 15 6 1.9746 1.9205 3.6642 16 6 1.4785 0.9909 4.6081 17 6 1.4430 0.9708 6.0098 18 6 0.8846 -0.0888 6.6603 19 6 0.3457 -1.1570 5.9434 20 8 -0.2063 -2.2047 6.6087 21 6 -0.1994 -2.1430 8.0364 22 6 0.3698 -1.1583 4.5612 23 6 0.9349 -0.0861 3.8794 24 7 1.1031 0.1945 2.5432 25 1 0.8232 -0.3721 1.8072 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 0.9782 0.0901 -3.3773 32 1 2.4561 2.8607 3.8891 33 1 1.8575 1.7938 6.5730 34 1 0.8584 -0.1010 7.7399 35 1 -0.6693 -3.0394 8.4411 36 1 0.8288 -2.0791 8.3923 37 1 -0.7529 -1.2633 8.3647 38 1 -0.0490 -1.9890 4.0128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:31 Heat of formation + Delta-G solvation = 28.224887 kcal Electronic energy + Delta-G solvation = -22662.216147 eV Core-core repulsion = 19279.481156 eV Total energy + Delta-G solvation = -3382.734992 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30367 -39.44182 -38.20369 -35.55752 -35.32094 -32.31964 -31.65210 -30.20327 -28.96777 -28.57216 -26.84210 -25.40250 -23.21728 -22.52720 -21.46280 -20.70147 -19.41197 -18.18241 -17.31733 -16.73911 -16.12720 -15.73213 -15.54444 -15.20074 -14.58413 -14.38050 -14.22138 -13.62123 -13.51771 -13.46046 -13.02131 -12.80765 -12.28242 -12.17453 -12.12766 -11.92079 -11.70861 -11.54240 -11.31279 -11.11071 -10.70000 -10.60366 -10.46772 -10.38415 -10.11003 -9.27086 -9.11344 -8.70545 -8.07507 -7.87205 -7.16809 -6.68756 -3.91156 1.19784 1.82347 2.66533 3.08138 3.10569 3.17363 3.22875 3.72942 3.97264 4.05717 4.22486 4.61257 4.84648 4.89132 5.03581 5.05573 5.09907 5.31422 5.35905 5.42390 5.59908 5.64749 5.69149 5.89496 6.06654 6.12595 6.17120 6.23401 6.33792 6.47552 6.67883 6.75553 6.81885 7.09451 7.18118 7.28376 7.46162 7.53212 7.80059 7.95195 8.27690 8.95780 9.16671 9.77027 10.34287 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033151 B = 0.003955 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.426128 B = 7077.945570 C = 7717.322125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 N -0.421 5.421 4 C -0.315 4.315 5 H 0.114 0.886 6 C 0.040 3.960 7 N -0.844 5.844 8 Si 0.915 3.085 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.485 3.515 13 O -0.577 6.577 14 C 0.064 3.936 15 C -0.148 4.148 16 C -0.135 4.135 17 C -0.031 4.031 18 C -0.228 4.228 19 C 0.134 3.866 20 O -0.321 6.321 21 C 0.031 3.969 22 C -0.169 4.169 23 C 0.125 3.875 24 N -0.585 5.585 25 H 0.430 0.570 26 H 0.038 0.962 27 H 0.106 0.894 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.046 0.954 31 H 0.273 0.727 32 H 0.148 0.852 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -7.259 13.783 15.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.029 4.029 3 N -0.138 5.138 4 C -0.442 4.442 5 H 0.131 0.869 6 C -0.167 4.167 7 N -0.481 5.481 8 Si 0.741 3.259 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.189 1.189 12 C 0.275 3.725 13 O -0.462 6.462 14 C -0.045 4.045 15 C -0.174 4.174 16 C -0.140 4.140 17 C -0.050 4.050 18 C -0.247 4.247 19 C 0.088 3.912 20 O -0.234 6.234 21 C -0.065 4.065 22 C -0.190 4.190 23 C 0.013 3.987 24 N -0.202 5.202 25 H 0.281 0.719 26 H 0.057 0.943 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.166 0.834 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.583 -7.051 13.304 15.277 hybrid contribution 0.261 -0.318 -0.807 0.906 sum -2.322 -7.370 12.496 14.692 Atomic orbital electron populations 1.22434 0.96106 1.01020 1.03878 1.21845 0.94719 0.84760 1.01554 1.43772 1.53326 1.10514 1.06152 1.19782 1.37314 1.05107 0.81996 0.86877 1.25264 0.95928 0.96752 0.98749 1.70132 1.21599 1.29682 1.26664 0.86080 0.80911 0.79474 0.79436 1.20152 1.20952 1.18927 1.16776 0.87444 0.86430 0.81859 1.90675 1.53729 1.16178 1.85598 1.20796 1.00943 0.86325 0.96472 1.20665 1.06646 1.00722 0.89359 1.18205 1.06240 0.96300 0.93242 1.20142 0.95937 0.96944 0.91999 1.20631 1.08242 0.96302 0.99567 1.18376 0.94898 0.87126 0.90767 1.85997 1.76234 1.41068 1.20113 1.22985 1.01724 1.02993 0.78750 1.18870 1.09675 0.99505 0.90981 1.17992 1.00291 0.95876 0.84501 1.43983 1.51153 1.18986 1.06053 0.71880 0.94330 0.87522 0.93201 0.87605 0.93632 0.91690 0.83404 0.85798 0.85821 0.88675 0.92795 0.92797 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 8.43 37.16 0.31 -3.11 16 2 C 0.10 2.02 4.83 -4.04 -0.02 2.00 16 3 N -0.42 -10.49 2.64 -116.27 -0.31 -10.79 16 4 C -0.32 -8.38 9.36 -15.02 -0.14 -8.52 16 5 H 0.11 3.21 7.37 -52.48 -0.39 2.82 16 6 C 0.04 0.97 4.67 -17.45 -0.08 0.89 16 7 N -0.84 -20.23 9.24 55.50 0.51 -19.72 16 8 Si 0.92 19.28 29.66 -169.99 -5.04 14.24 16 9 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 12 C 0.49 12.23 7.53 -12.82 -0.10 12.13 16 13 O -0.58 -16.29 16.45 5.17 0.08 -16.21 16 14 C 0.06 1.38 6.41 -82.28 -0.53 0.85 16 15 C -0.15 -2.88 10.55 -39.13 -0.41 -3.29 16 16 C -0.14 -2.35 6.16 -106.90 -0.66 -3.01 16 17 C -0.03 -0.45 10.05 -39.53 -0.40 -0.84 16 18 C -0.23 -2.93 8.95 -39.82 -0.36 -3.29 16 19 C 0.13 1.90 6.68 -39.12 -0.26 1.64 16 20 O -0.32 -4.04 10.48 -19.22 -0.20 -4.24 16 21 C 0.03 0.25 9.80 101.05 0.99 1.24 16 22 C -0.17 -2.61 10.00 -39.28 -0.39 -3.00 16 23 C 0.12 2.18 7.25 -83.96 -0.61 1.57 16 24 N -0.59 -10.88 4.21 -7.36 -0.03 -10.91 16 25 H 0.43 7.49 3.37 -40.82 -0.14 7.35 16 26 H 0.04 0.74 6.39 -51.93 -0.33 0.41 16 27 H 0.11 2.39 6.44 -51.93 -0.33 2.05 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.11 2.35 5.92 -51.93 -0.31 2.04 16 30 H 0.05 0.87 5.15 -51.93 -0.27 0.60 16 31 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 32 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 33 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.12 1.22 6.25 -52.49 -0.33 0.89 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.38 7.64 -51.93 -0.40 -0.01 16 37 H 0.05 0.39 7.64 -51.93 -0.40 -0.01 16 38 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -29.64 309.60 -7.10 -36.75 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.14 Total: 10.96 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.65 Total: -4.75 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.18 Total: -41.42 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.12 Total: -20.45 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.04 Total: 14.24 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.64 -7.10 -36.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.971 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds