Wall clock time and date at job start Tue Mar 31 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46823 * 2 1 4 4 C 1.36825 * 119.99770 * 262.56566 * 3 2 1 5 5 H 1.08004 * 119.99991 * 186.62857 * 4 3 2 6 6 C 1.39044 * 120.00085 * 6.62918 * 4 3 2 7 7 N 1.31370 * 119.99889 * 33.63662 * 6 4 3 8 8 Si 1.86801 * 120.00115 * 213.63826 * 6 4 3 9 9 H 1.48496 * 109.47149 * 95.00081 * 8 6 4 10 10 H 1.48497 * 109.46950 * 215.00018 * 8 6 4 11 11 H 1.48497 * 109.46911 * 334.99592 * 8 6 4 12 12 C 1.34775 * 120.00342 * 82.56054 * 3 2 1 13 13 O 1.21726 * 120.00096 * 181.73440 * 12 3 2 14 14 C 1.46755 * 120.00005 * 1.74505 * 12 3 2 15 15 C 1.36065 * 125.45610 * 168.94559 * 14 12 3 16 16 C 1.41472 * 107.75717 * 180.26383 * 15 14 12 17 17 C 1.40225 * 133.25426 * 180.02562 * 16 15 14 18 18 C 1.36297 * 119.90534 * 179.97438 * 17 16 15 19 19 C 1.39470 * 120.55532 * 359.97438 * 18 17 16 20 20 O 1.35835 * 119.73709 * 179.97438 * 19 18 17 21 21 C 1.42902 * 117.00076 * 0.02562 * 20 19 18 22 22 C 1.38239 * 120.52463 * 0.02562 * 19 18 17 23 23 C 1.39062 * 119.77427 * 359.96177 * 22 19 18 24 24 N 1.37570 * 133.09161 * 180.02562 * 23 22 19 25 25 H 0.97004 * 125.62930 * 0.02562 * 24 23 22 26 26 H 1.09000 * 109.47506 * 300.00075 * 1 2 3 27 27 H 1.09003 * 109.46864 * 60.00900 * 1 2 3 28 28 H 1.09007 * 109.46747 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47705 * 239.99711 * 2 1 3 30 30 H 1.09003 * 109.46864 * 119.99100 * 2 1 3 31 31 H 0.97005 * 120.00564 * 179.97438 * 7 6 4 32 32 H 1.07997 * 126.12409 * 0.23453 * 15 14 12 33 33 H 1.07999 * 120.04278 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.72253 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.47123 * 179.97438 * 21 20 19 36 36 H 1.08998 * 109.46802 * 299.99293 * 21 20 19 37 37 H 1.08991 * 109.47514 * 59.99647 * 21 20 19 38 38 H 1.07999 * 120.11413 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3908 1.9751 -1.1750 5 1 2.8503 2.9525 -1.1642 6 6 2.1779 1.3204 -2.3830 7 7 1.1270 0.5467 -2.5345 8 14 3.3860 1.5409 -3.7906 9 1 4.3756 0.4338 -3.7715 10 1 2.6510 1.5256 -5.0808 11 1 4.0918 2.8385 -3.6384 12 6 2.1004 2.0670 1.1573 13 8 2.4761 3.2248 1.1534 14 6 1.7371 1.4178 2.4223 15 6 1.9746 1.9205 3.6642 16 6 1.4785 0.9909 4.6081 17 6 1.4430 0.9708 6.0098 18 6 0.8846 -0.0888 6.6603 19 6 0.3457 -1.1570 5.9434 20 8 -0.2063 -2.2047 6.6087 21 6 -0.1994 -2.1430 8.0364 22 6 0.3698 -1.1583 4.5612 23 6 0.9349 -0.0861 3.8794 24 7 1.1031 0.1945 2.5432 25 1 0.8232 -0.3721 1.8072 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 0.9782 0.0901 -3.3773 32 1 2.4561 2.8607 3.8891 33 1 1.8575 1.7938 6.5730 34 1 0.8584 -0.1010 7.7399 35 1 -0.6693 -3.0394 8.4411 36 1 0.8288 -2.0791 8.3923 37 1 -0.7529 -1.2633 8.3647 38 1 -0.0490 -1.9890 4.0128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240862.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:30 Heat of formation + Delta-G solvation = 10.657008 kcal Electronic energy + Delta-G solvation = -22662.977948 eV Core-core repulsion = 19279.481156 eV Total energy + Delta-G solvation = -3383.496792 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.69538 -40.68062 -39.74392 -37.37367 -36.61057 -34.12206 -33.02208 -31.83644 -30.28517 -29.85502 -27.80909 -27.09514 -24.76169 -24.09460 -22.74801 -22.07408 -20.97575 -19.37185 -19.08079 -18.41854 -17.40925 -16.85958 -16.60600 -16.57759 -16.24335 -16.02213 -15.89787 -15.03911 -15.00483 -14.67738 -14.49806 -14.08229 -13.98015 -13.78264 -13.45203 -13.12182 -13.03210 -12.86301 -12.80897 -12.68252 -12.26373 -12.16518 -12.00367 -11.64887 -11.54730 -11.00587 -10.67363 -10.55687 -9.95741 -9.12821 -8.58853 -8.47705 -5.90381 -0.10345 0.64596 1.13968 1.41048 1.44840 1.53839 1.90067 2.21664 2.37248 2.62326 2.85065 2.90078 3.00749 3.71058 3.77300 3.97824 4.10767 4.14424 4.36944 4.43544 4.44444 4.47645 4.51821 4.55858 4.63013 4.80029 4.82877 4.90262 5.00837 5.09621 5.31361 5.33600 5.47739 5.51200 5.67430 5.73641 5.90419 6.01930 6.36404 6.47718 6.54790 7.02039 7.26484 7.87069 8.44686 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033151 B = 0.003955 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.426128 B = 7077.945570 C = 7717.322125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.098 3.902 3 N -0.429 5.429 4 C -0.365 4.365 5 H 0.079 0.921 6 C 0.019 3.981 7 N -0.846 5.846 8 Si 0.980 3.020 9 H -0.265 1.265 10 H -0.271 1.271 11 H -0.277 1.277 12 C 0.473 3.527 13 O -0.627 6.627 14 C 0.026 3.974 15 C -0.136 4.136 16 C -0.160 4.160 17 C -0.025 4.025 18 C -0.218 4.218 19 C 0.150 3.850 20 O -0.332 6.332 21 C 0.017 3.983 22 C -0.191 4.191 23 C 0.122 3.878 24 N -0.583 5.583 25 H 0.431 0.569 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.282 0.718 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.163 0.837 35 H 0.118 0.882 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 -9.550 16.143 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.145 5.145 4 C -0.492 4.492 5 H 0.097 0.903 6 C -0.188 4.188 7 N -0.481 5.481 8 Si 0.803 3.197 9 H -0.190 1.190 10 H -0.196 1.196 11 H -0.202 1.202 12 C 0.264 3.736 13 O -0.516 6.516 14 C -0.083 4.083 15 C -0.163 4.163 16 C -0.165 4.165 17 C -0.044 4.044 18 C -0.237 4.237 19 C 0.103 3.897 20 O -0.246 6.246 21 C -0.077 4.077 22 C -0.212 4.212 23 C 0.011 3.989 24 N -0.199 5.199 25 H 0.283 0.717 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.165 0.835 33 H 0.170 0.830 34 H 0.181 0.819 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.301 -9.403 15.670 18.570 hybrid contribution 0.362 0.262 -1.279 1.355 sum -2.940 -9.141 14.391 17.300 Atomic orbital electron populations 1.22277 0.94756 1.02834 1.02274 1.21942 0.95750 0.82945 1.01908 1.43935 1.53119 1.11707 1.05699 1.19608 1.40416 1.05360 0.83797 0.90275 1.25924 0.96672 0.96091 1.00088 1.70162 1.21370 1.28937 1.27620 0.85148 0.78776 0.78958 0.76825 1.18991 1.19556 1.20224 1.17334 0.86910 0.86203 0.83174 1.90601 1.56030 1.18303 1.86694 1.20226 1.04588 0.88375 0.95129 1.20851 1.05169 1.00741 0.89541 1.18379 1.07532 0.95907 0.94667 1.20501 0.95126 0.98168 0.90599 1.21041 1.06292 0.94879 1.01497 1.18571 0.93105 0.87503 0.90558 1.86009 1.75501 1.40335 1.22713 1.23388 1.03234 1.04982 0.76079 1.19035 1.10704 0.99517 0.91990 1.18258 1.00292 0.96580 0.83793 1.43719 1.51286 1.18077 1.06854 0.71736 0.94463 0.90456 0.89563 0.88759 0.91588 0.90717 0.83455 0.82964 0.81936 0.86369 0.91372 0.91426 0.84706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.40 8.43 71.98 0.61 -5.79 16 2 C 0.10 4.24 4.83 86.38 0.42 4.65 16 3 N -0.43 -22.59 2.64 -639.98 -1.69 -24.28 16 4 C -0.37 -20.60 9.36 84.11 0.79 -19.81 16 5 H 0.08 4.89 7.37 -2.91 -0.02 4.87 16 6 C 0.02 0.97 4.67 84.96 0.40 1.36 16 7 N -0.85 -40.83 9.24 21.68 0.20 -40.63 16 8 Si 0.98 40.18 29.66 68.60 2.03 42.22 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 10 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 12 C 0.47 25.40 7.53 86.47 0.65 26.05 16 13 O -0.63 -38.23 16.45 -4.43 -0.07 -38.30 16 14 C 0.03 1.16 6.41 39.84 0.26 1.41 16 15 C -0.14 -5.42 10.55 22.56 0.24 -5.18 16 16 C -0.16 -5.40 6.16 -21.34 -0.13 -5.54 16 17 C -0.03 -0.64 10.05 22.30 0.22 -0.41 16 18 C -0.22 -4.64 8.95 22.11 0.20 -4.44 16 19 C 0.15 3.70 6.68 22.57 0.15 3.85 16 20 O -0.33 -7.04 10.48 -91.70 -0.96 -8.00 16 21 C 0.02 0.19 9.80 113.37 1.11 1.31 16 22 C -0.19 -5.49 10.00 22.47 0.22 -5.27 16 23 C 0.12 4.14 7.25 39.10 0.28 4.43 16 24 N -0.58 -21.87 4.21 -177.19 -0.75 -22.61 16 25 H 0.43 15.06 3.37 -92.71 -0.31 14.75 16 26 H 0.04 1.45 6.39 -2.39 -0.02 1.44 16 27 H 0.08 3.52 6.44 -2.39 -0.02 3.51 16 28 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 29 H 0.09 4.25 5.92 -2.39 -0.01 4.24 16 30 H 0.07 2.57 5.15 -2.39 -0.01 2.55 16 31 H 0.28 12.51 8.31 -92.70 -0.77 11.74 16 32 H 0.15 5.68 8.06 -2.91 -0.02 5.66 16 33 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.16 2.20 6.25 -2.91 -0.02 2.18 16 35 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.07 0.61 7.64 -2.39 -0.02 0.59 16 37 H 0.07 0.61 7.64 -2.39 -0.02 0.59 16 38 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -68.63 309.60 4.98 -63.66 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.80 Total: 31.33 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.41 Total: -3.38 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.23 Total: -87.52 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.03 Total: -46.30 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.22 kcal Total: -68.63 4.98 -63.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240862.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.314 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds