Wall clock time and date at job start Tue Mar 31 2020 03:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99697 * 2 1 4 4 H 1.48509 * 109.46731 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47128 * 300.00139 * 3 2 1 6 6 H 1.48493 * 109.47139 * 60.00659 * 3 2 1 7 7 C 1.37874 * 119.99893 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00447 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47617 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00521 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99885 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00281 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47118 * 173.86341 * 13 11 10 15 15 C 1.47900 * 110.99945 * 183.36387 * 14 13 11 16 16 C 1.53987 * 107.05916 * 145.84346 * 15 14 13 17 17 C 1.54590 * 105.14260 * 358.76975 * 16 15 14 18 18 H 1.09008 * 110.72537 * 96.40235 * 17 16 15 19 19 C 1.50694 * 110.72805 * 219.68457 * 17 16 15 20 20 C 1.38241 * 120.00025 * 58.27412 * 19 17 16 21 21 C 1.38231 * 120.00034 * 179.76782 * 20 19 17 22 22 C 1.38229 * 119.99977 * 0.48184 * 21 20 19 23 23 C 1.38237 * 120.00536 * 359.79421 * 22 21 20 24 24 C 1.38236 * 120.00443 * 238.54406 * 19 17 16 25 25 C 1.48533 * 110.99781 * 300.75462 * 14 13 11 26 26 H 0.97002 * 120.00446 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.47151 * 60.00112 * 9 7 2 28 28 H 1.09003 * 109.47115 * 300.00570 * 9 7 2 29 29 H 0.97012 * 119.99727 * 0.02562 * 10 9 7 30 30 H 1.08996 * 109.47086 * 53.86115 * 13 11 10 31 31 H 1.08996 * 109.47075 * 293.85834 * 13 11 10 32 32 H 1.08996 * 109.91724 * 26.48322 * 15 14 13 33 33 H 1.09002 * 110.07707 * 265.28753 * 15 14 13 34 34 H 1.09003 * 110.31050 * 239.85391 * 16 15 14 35 35 H 1.09005 * 110.31391 * 117.68946 * 16 15 14 36 36 H 1.07997 * 119.99307 * 359.97438 * 20 19 17 37 37 H 1.08008 * 119.99793 * 180.25141 * 21 20 19 38 38 H 1.08001 * 119.99837 * 179.76986 * 22 21 20 39 39 H 1.07989 * 120.00625 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.99787 * 0.02562 * 24 19 17 41 41 H 1.09000 * 110.66989 * 81.84659 * 25 14 13 42 42 H 1.08999 * 110.66924 * 318.71250 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0005 14 7 2.0046 -7.2958 0.1468 15 6 2.9400 -8.4383 0.2323 16 6 2.3073 -9.4700 1.1843 17 6 0.9810 -8.8280 1.6518 18 1 0.1458 -9.1858 1.0495 19 6 0.7418 -9.1025 3.1141 20 6 1.6706 -8.6971 4.0544 21 6 1.4489 -8.9446 5.3962 22 6 0.3033 -9.6063 5.7969 23 6 -0.6227 -10.0168 4.8562 24 6 -0.4036 -9.7645 3.5148 25 6 1.2234 -7.3169 1.4100 26 1 -0.4851 0.8400 0.0004 27 1 0.6240 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 3.1568 -3.4354 -0.0002 30 1 3.4292 -5.9112 0.8300 31 1 3.2859 -6.0347 -0.9399 32 1 3.8983 -8.1045 0.6301 33 1 3.0813 -8.8807 -0.7539 34 1 2.9620 -9.6492 2.0372 35 1 2.1104 -10.4024 0.6551 36 1 2.5677 -8.1841 3.7408 37 1 2.1727 -8.6243 6.1311 38 1 0.1320 -9.8030 6.8449 39 1 -1.5175 -10.5341 5.1692 40 1 -1.1269 -10.0854 2.7799 41 1 0.2771 -6.7904 1.2860 42 1 1.8012 -6.8845 2.2269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069633227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:50 Heat of formation + Delta-G solvation = -11.419799 kcal Electronic energy + Delta-G solvation = -22093.183991 eV Core-core repulsion = 18844.562971 eV Total energy + Delta-G solvation = -3248.621020 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.13131 -38.97593 -37.62710 -34.16862 -33.29302 -32.30532 -31.04139 -30.46778 -28.33785 -27.68883 -25.75657 -23.17729 -22.61735 -22.26093 -20.98104 -20.09302 -19.61531 -17.31714 -16.95523 -16.18237 -15.75236 -15.38947 -15.21426 -15.04825 -14.64002 -14.51126 -13.96033 -13.72550 -13.42063 -13.24298 -13.05464 -12.86690 -12.55113 -12.20298 -11.95658 -11.86263 -11.69055 -11.44819 -11.28069 -11.07418 -10.93797 -10.86407 -10.82214 -10.58376 -10.30591 -9.37460 -9.04446 -8.96437 -8.77955 -8.73168 -8.29332 -7.84620 -6.16418 -4.23290 1.22874 1.28210 3.23362 3.30323 3.33334 3.39689 3.64135 3.75835 4.21955 4.37227 4.57559 4.71456 4.78831 4.86161 4.87569 4.98242 5.07522 5.19677 5.29798 5.30534 5.37092 5.39814 5.49907 5.57074 5.60842 5.67716 5.74755 5.87193 5.90666 5.96581 6.08603 6.32524 6.35583 6.38708 6.56069 6.87448 6.93764 6.98502 7.33441 7.46564 7.53100 7.68255 7.97676 8.64512 8.79722 9.13557 9.43576 10.93823 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.003107 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.078299 B = 9008.431561 C = 9729.308550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.497 3.503 12 O -0.539 6.539 13 C 0.027 3.973 14 N -0.497 5.497 15 C 0.034 3.966 16 C -0.121 4.121 17 C -0.056 4.056 18 H 0.092 0.908 19 C -0.067 4.067 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.115 4.115 25 C 0.045 3.955 26 H 0.265 0.735 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.389 0.611 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 -20.921 7.361 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.417 6.417 13 C -0.105 4.105 14 N -0.221 5.221 15 C -0.094 4.094 16 C -0.159 4.159 17 C -0.075 4.075 18 H 0.110 0.890 19 C -0.067 4.067 20 C -0.133 4.133 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.082 4.082 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.574 -20.956 6.886 22.528 hybrid contribution 1.500 1.238 0.708 2.069 sum 6.073 -19.718 7.594 21.986 Atomic orbital electron populations 1.69985 1.06100 1.27178 1.48985 1.24957 0.94914 0.99457 0.94731 0.86367 0.79820 0.83000 0.77758 1.19649 1.20782 1.20800 1.21264 0.93274 0.90477 1.53070 0.91893 1.19085 0.88281 0.81911 0.97694 1.46451 1.11057 1.06097 1.72782 1.20268 0.89550 0.84114 0.77951 1.90635 1.16629 1.84545 1.49871 1.22245 0.95539 0.89890 1.02810 1.64570 1.21104 1.01005 1.35462 1.22924 0.94521 0.91964 1.00016 1.22508 0.95952 0.98563 0.98896 1.21112 0.98614 0.96199 0.91561 0.89000 1.19794 0.94530 0.97473 0.94900 1.20998 0.99351 1.00073 0.92897 1.21128 0.97705 0.98989 0.95833 1.21126 0.94731 0.99315 0.99409 1.21134 0.99211 1.00195 0.93174 1.21096 0.97061 0.99077 0.96073 1.23471 1.00605 0.94581 0.89539 0.92504 0.95525 0.95637 0.77841 0.92542 0.88126 0.93801 0.90168 0.91233 0.90829 0.86332 0.86198 0.86311 0.86168 0.85975 0.87531 0.93970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.70 5.43 -5.20 -0.03 6.67 16 10 N -0.71 -15.08 5.55 -61.47 -0.34 -15.42 16 11 C 0.50 9.98 7.46 -10.99 -0.08 9.90 16 12 O -0.54 -12.97 14.29 5.55 0.08 -12.89 16 13 C 0.03 0.39 5.30 -4.97 -0.03 0.37 16 14 N -0.50 -7.21 5.11 -231.90 -1.19 -8.39 16 15 C 0.03 0.36 6.70 -2.76 -0.02 0.35 16 16 C -0.12 -1.19 6.41 -25.38 -0.16 -1.35 16 17 C -0.06 -0.65 3.28 -89.92 -0.29 -0.95 16 18 H 0.09 1.09 7.96 -51.92 -0.41 0.67 16 19 C -0.07 -0.76 4.93 -104.62 -0.52 -1.28 16 20 C -0.12 -1.27 8.14 -39.58 -0.32 -1.59 16 21 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 22 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.23 9.69 -39.58 -0.38 -1.61 16 25 C 0.05 0.67 4.97 -1.90 -0.01 0.66 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.39 6.99 8.32 -40.81 -0.34 6.65 16 30 H 0.06 0.72 7.98 -51.93 -0.41 0.30 16 31 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.42 7.68 -51.93 -0.40 0.02 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.63 7.03 -51.93 -0.37 0.27 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.12 1.22 7.27 -52.49 -0.38 0.84 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.12 1.12 7.98 -52.49 -0.42 0.71 16 41 H 0.11 1.95 6.43 -51.93 -0.33 1.61 16 42 H 0.04 0.62 6.71 -51.93 -0.35 0.27 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -32.48 344.45 -10.32 -42.80 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.33 Total: 5.37 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.45 Total: -7.04 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.79 Total: -49.29 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.48 -10.32 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069633227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds