Wall clock time and date at job start Tue Mar 31 2020 02:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.56787 * 2 1 4 4 C 1.50442 * 109.66531 * 239.70514 * 2 1 3 5 5 O 1.21280 * 118.48408 * 47.38635 * 4 2 1 6 6 N 1.33379 * 123.02574 * 227.41085 * 4 2 1 7 7 C 1.45648 * 124.58612 * 4.32019 * 6 4 2 8 8 C 1.52987 * 110.77318 * 338.09541 * 7 6 4 9 9 N 1.47052 * 109.56764 * 120.23899 * 2 1 3 10 10 C 1.34768 * 121.35484 * 342.40468 * 9 2 1 11 11 O 1.21545 * 120.00091 * 350.90876 * 10 9 2 12 12 C 1.47890 * 120.00125 * 170.90691 * 10 9 2 13 13 C 1.39922 * 120.02348 * 230.03521 * 12 10 9 14 14 C 1.38334 * 120.35481 * 180.02562 * 13 12 10 15 15 C 1.37746 * 120.41202 * 359.97438 * 14 13 12 16 16 C 1.40749 * 120.04133 * 359.97438 * 15 14 13 17 17 C 1.41441 * 120.17616 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00109 * 29.03418 * 17 16 15 19 19 C 1.39946 * 119.99874 * 209.03349 * 17 16 15 20 20 N 1.30825 * 119.99657 * 10.32535 * 19 17 16 21 21 Si 1.86796 * 120.00124 * 190.32563 * 19 17 16 22 22 H 1.48502 * 109.46758 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46955 * 119.99944 * 21 19 17 24 24 H 1.48492 * 109.47156 * 240.00058 * 21 19 17 25 25 C 1.38995 * 120.02177 * 49.76106 * 12 10 9 26 26 H 1.09003 * 109.47038 * 310.78988 * 1 2 3 27 27 H 1.09002 * 109.47639 * 70.79338 * 1 2 3 28 28 H 1.09003 * 109.47219 * 190.79715 * 1 2 3 29 29 H 0.96998 * 117.70791 * 184.33862 * 6 4 2 30 30 H 1.08996 * 109.21750 * 98.43500 * 7 6 4 31 31 H 1.09003 * 109.21542 * 217.80834 * 7 6 4 32 32 H 1.09000 * 109.72466 * 287.05350 * 8 7 6 33 33 H 1.09009 * 109.71691 * 166.40116 * 8 7 6 34 34 H 1.07990 * 119.82215 * 0.02562 * 13 12 10 35 35 H 1.07994 * 119.78961 * 180.02562 * 14 13 12 36 36 H 1.08003 * 119.97849 * 179.97438 * 15 14 13 37 37 H 0.97006 * 119.99926 * 179.97438 * 20 19 17 38 38 H 1.07992 * 120.20462 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0362 -0.7146 -1.2232 5 8 1.5513 -0.4346 -2.2990 6 7 2.9935 -1.6424 -1.1791 7 6 3.6022 -2.1447 0.0451 8 6 3.4259 -1.1441 1.1889 9 7 2.0225 -0.6978 1.1971 10 6 1.2237 -0.9150 2.2605 11 8 0.1278 -0.3921 2.3144 12 6 1.6804 -1.7897 3.3620 13 6 0.8536 -2.8176 3.8286 14 6 1.2738 -3.6395 4.8590 15 6 2.5106 -3.4562 5.4370 16 6 3.3565 -2.4282 4.9803 17 6 4.6272 -2.2378 5.5714 18 1 5.1543 -3.0769 6.0008 19 6 5.2016 -0.9619 5.6000 20 7 4.4890 0.0837 5.2676 21 14 6.9855 -0.7519 6.1126 22 1 7.5669 -2.0795 6.4367 23 1 7.7510 -0.1352 4.9996 24 1 7.0569 0.1256 7.3084 25 6 2.9337 -1.5950 3.9307 26 1 -0.3633 0.6714 0.7781 27 1 -0.3634 0.3381 -0.9704 28 1 -0.3634 -1.0095 0.1925 29 1 3.3064 -2.0080 -2.0212 30 1 3.1314 -3.0889 0.3186 31 1 4.6660 -2.3103 -0.1250 32 1 4.0831 -0.2884 1.0337 33 1 3.6646 -1.6245 2.1378 34 1 -0.1177 -2.9701 3.3820 35 1 0.6284 -4.4303 5.2117 36 1 2.8314 -4.1017 6.2413 37 1 4.8870 0.9681 5.2877 38 1 3.5771 -0.8060 3.5704 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075649560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:24 Heat of formation + Delta-G solvation = -49.269365 kcal Electronic energy + Delta-G solvation = -23297.598914 eV Core-core repulsion = 19911.503519 eV Total energy + Delta-G solvation = -3386.095395 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.10683 -40.45153 -38.91065 -37.62966 -35.55167 -35.37886 -33.35749 -31.69065 -30.96590 -29.56596 -27.21124 -26.56484 -24.29450 -24.03066 -22.77463 -21.33012 -20.15482 -19.02759 -18.46607 -18.26088 -17.35324 -17.01193 -16.91641 -16.50781 -16.29319 -16.04842 -15.51129 -15.16108 -14.72652 -14.58191 -14.24952 -14.02375 -13.76602 -13.56330 -13.33247 -13.07165 -12.90196 -12.86662 -12.70160 -12.56096 -12.45239 -12.14457 -11.77940 -11.48135 -11.46886 -11.08339 -10.35387 -10.23414 -9.80918 -9.41503 -9.27931 -8.57582 -6.36259 0.53193 0.99769 1.34015 1.47091 1.50665 1.59886 1.68062 1.80903 2.19667 2.25893 2.75531 3.31448 3.58459 3.63929 3.76979 3.98477 4.02466 4.12737 4.34065 4.45643 4.61924 4.68106 4.73817 4.79751 4.88516 4.89497 5.06581 5.10253 5.22932 5.35630 5.37170 5.54486 5.70340 5.84090 5.95528 6.04831 6.08039 6.25576 6.28783 6.61250 6.92827 6.95549 6.98171 7.11004 8.38186 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.005754 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.200675 B = 4865.284201 C = 5643.799081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.130 3.870 3 H 0.115 0.885 4 C 0.520 3.480 5 O -0.579 6.579 6 N -0.701 5.701 7 C 0.100 3.900 8 C 0.064 3.936 9 N -0.609 5.609 10 C 0.576 3.424 11 O -0.564 6.564 12 C -0.125 4.125 13 C -0.197 4.197 14 C -0.095 4.095 15 C -0.212 4.212 16 C 0.076 3.924 17 C -0.487 4.487 18 H 0.081 0.919 19 C 0.040 3.960 20 N -0.834 5.834 21 Si 0.978 3.022 22 H -0.257 1.257 23 H -0.262 1.262 24 H -0.277 1.277 25 C -0.136 4.136 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.411 0.589 30 H 0.073 0.927 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.287 0.713 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 -2.809 -7.658 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.025 3.975 3 H 0.132 0.868 4 C 0.306 3.694 5 O -0.460 6.460 6 N -0.352 5.352 7 C -0.024 4.024 8 C -0.058 4.058 9 N -0.344 5.344 10 C 0.367 3.633 11 O -0.444 6.444 12 C -0.128 4.128 13 C -0.217 4.217 14 C -0.114 4.114 15 C -0.232 4.232 16 C 0.074 3.926 17 C -0.517 4.517 18 H 0.099 0.901 19 C -0.174 4.174 20 N -0.460 5.460 21 Si 0.800 3.200 22 H -0.181 1.181 23 H -0.186 1.186 24 H -0.203 1.203 25 C -0.156 4.156 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.248 0.752 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.347 -2.063 -7.985 8.901 hybrid contribution 0.620 0.173 0.263 0.695 sum 3.967 -1.891 -7.723 8.885 Atomic orbital electron populations 1.21900 0.90835 1.02958 1.02742 1.21370 0.97686 0.97062 0.81430 0.86799 1.20219 0.79181 0.79875 0.90159 1.90732 1.58313 1.66290 1.30635 1.45298 1.38193 1.40197 1.11530 1.21932 1.01166 0.96672 0.82631 1.22869 0.80700 0.99737 1.02450 1.48174 1.12869 1.58378 1.15020 1.18793 0.83310 0.79457 0.81698 1.90670 1.23253 1.51143 1.79331 1.19663 0.96799 0.98116 0.98225 1.20546 0.99386 0.99189 1.02545 1.20799 0.96093 0.98758 0.95701 1.21441 0.95263 1.03512 1.02978 1.17907 0.93340 0.91220 0.90116 1.19816 1.02079 0.95132 1.34680 0.90095 1.26623 1.03260 0.94782 0.92774 1.69826 1.38356 1.00316 1.37535 0.85196 0.76954 0.79284 0.78573 1.18052 1.18610 1.20251 1.21516 0.94202 1.02438 0.97443 0.89907 0.90840 0.93854 0.75211 0.90845 0.85107 0.88927 0.85945 0.87974 0.85499 0.87367 0.90229 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 7.66 71.98 0.55 -3.62 16 2 C 0.13 4.01 3.65 44.06 0.16 4.17 16 3 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 4 C 0.52 15.07 7.35 87.79 0.65 15.71 16 5 O -0.58 -19.89 17.00 -3.03 -0.05 -19.94 16 6 N -0.70 -15.41 5.42 -467.09 -2.53 -17.95 16 7 C 0.10 2.00 7.34 86.54 0.63 2.64 16 8 C 0.06 1.75 5.77 86.23 0.50 2.25 16 9 N -0.61 -20.32 2.98 -802.54 -2.39 -22.71 16 10 C 0.58 23.77 6.86 86.80 0.60 24.37 16 11 O -0.56 -25.66 13.40 -3.86 -0.05 -25.71 16 12 C -0.12 -5.45 5.27 -20.13 -0.11 -5.55 16 13 C -0.20 -8.31 9.73 22.70 0.22 -8.09 16 14 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 15 C -0.21 -9.23 9.78 22.77 0.22 -9.00 16 16 C 0.08 3.61 5.54 -21.32 -0.12 3.49 16 17 C -0.49 -22.87 9.06 23.47 0.21 -22.66 16 18 H 0.08 3.66 7.87 -2.91 -0.02 3.63 16 19 C 0.04 1.76 5.26 85.26 0.45 2.21 16 20 N -0.83 -39.27 10.85 21.83 0.24 -39.03 16 21 Si 0.98 33.95 29.57 68.60 2.03 35.98 16 22 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 23 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 24 H -0.28 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.14 -6.17 6.02 23.01 0.14 -6.03 16 26 H 0.08 2.95 6.35 -2.39 -0.02 2.94 16 27 H 0.07 2.23 7.55 -2.39 -0.02 2.21 16 28 H 0.04 1.54 7.46 -2.39 -0.02 1.52 16 29 H 0.41 7.25 8.80 -92.71 -0.82 6.43 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.12 3.96 3.79 -2.38 -0.01 3.95 16 34 H 0.10 4.12 8.06 -2.92 -0.02 4.09 16 35 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.11 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.29 12.38 8.30 -92.70 -0.77 11.61 16 38 H 0.13 5.91 4.76 -2.91 -0.01 5.89 16 Total: -1.00 -60.39 311.44 1.86 -58.53 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.29 Total: 34.53 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 4.33 Total: -3.71 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -4.68 Total: -79.68 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.10 Total: -45.65 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Total: -60.39 1.86 -58.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075649560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.263 kcal (2) G-P(sol) polarization free energy of solvation -60.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds