Wall clock time and date at job start Tue Mar 31 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.57065 * 2 1 4 4 C 1.50435 * 109.56767 * 120.24458 * 2 1 3 5 5 O 1.21281 * 118.48569 * 287.13522 * 4 2 1 6 6 N 1.33381 * 123.02510 * 107.11188 * 4 2 1 7 7 C 1.45647 * 124.58922 * 4.31431 * 6 4 2 8 8 C 1.52988 * 110.77595 * 338.10520 * 7 6 4 9 9 N 1.47051 * 109.52051 * 239.65614 * 2 1 3 10 10 C 1.34776 * 121.35083 * 102.92597 * 9 2 1 11 11 O 1.21547 * 120.00295 * 177.00300 * 10 9 2 12 12 C 1.47888 * 119.99999 * 356.99661 * 10 9 2 13 13 C 1.39921 * 120.02425 * 333.30839 * 12 10 9 14 14 C 1.38326 * 120.35729 * 179.73761 * 13 12 10 15 15 C 1.37759 * 120.41395 * 0.56293 * 14 13 12 16 16 C 1.40754 * 120.03598 * 359.69520 * 15 14 13 17 17 C 1.41433 * 120.17437 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00324 * 25.30137 * 17 16 15 19 19 C 1.39944 * 119.99891 * 205.30010 * 17 16 15 20 20 N 1.30833 * 119.99653 * 16.95183 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 196.95472 * 19 17 16 22 22 H 1.48500 * 109.47465 * 59.99763 * 21 19 17 23 23 H 1.48506 * 109.46992 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47005 * 299.99813 * 21 19 17 25 25 C 1.39002 * 120.02534 * 153.58005 * 12 10 9 26 26 H 1.08995 * 109.46824 * 299.76253 * 1 2 3 27 27 H 1.09001 * 109.46576 * 59.76034 * 1 2 3 28 28 H 1.08993 * 109.47056 * 179.75951 * 1 2 3 29 29 H 0.96998 * 117.70799 * 184.34388 * 6 4 2 30 30 H 1.08994 * 109.22087 * 217.76860 * 7 6 4 31 31 H 1.09004 * 109.18084 * 98.41251 * 7 6 4 32 32 H 1.08993 * 109.71958 * 166.39387 * 8 7 6 33 33 H 1.09003 * 109.71957 * 287.00755 * 8 7 6 34 34 H 1.08000 * 119.82244 * 359.97438 * 13 12 10 35 35 H 1.08000 * 119.79582 * 180.25158 * 14 13 12 36 36 H 1.07995 * 119.98060 * 179.71776 * 15 14 13 37 37 H 0.97001 * 119.99843 * 179.97438 * 20 19 17 38 38 H 1.07997 * 120.19902 * 359.95812 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0339 -0.7140 1.2245 5 8 1.9317 -0.1615 2.2993 6 7 2.5874 -1.9268 1.1827 7 6 2.8567 -2.6710 -0.0400 8 6 1.9730 -2.1720 -1.1848 9 7 2.0215 -0.7002 -1.1961 10 6 2.4984 -0.0225 -2.2590 11 8 2.9487 -0.6265 -3.2128 12 6 2.4738 1.4562 -2.2648 13 6 1.5152 2.1434 -1.5121 14 6 1.4893 3.5264 -1.5082 15 6 2.3991 4.2431 -2.2542 16 6 3.3674 3.5691 -3.0219 17 6 4.3032 4.3019 -3.7884 18 1 4.5636 5.3103 -3.5027 19 6 4.8917 3.7203 -4.9170 20 7 4.3565 2.6565 -5.4589 21 14 6.4414 4.4626 -5.6496 22 1 7.5244 4.4503 -4.6337 23 1 6.8616 3.6658 -6.8302 24 1 6.1704 5.8617 -6.0672 25 6 3.3993 2.1643 -3.0226 26 1 -0.3633 0.5101 0.8921 27 1 -0.3632 0.5176 -0.8879 28 1 -0.3633 -1.0276 -0.0043 29 1 2.8271 -2.3425 2.0257 30 1 2.6572 -3.7286 0.1324 31 1 3.9041 -2.5435 -0.3135 32 1 2.3457 -2.5596 -2.1329 33 1 0.9468 -2.5049 -1.0293 34 1 0.7941 1.5911 -0.9278 35 1 0.7480 4.0477 -0.9207 36 1 2.3696 5.3226 -2.2497 37 1 4.7642 2.2535 -6.2414 38 1 4.1386 1.6379 -3.6080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075649562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:28 Heat of formation + Delta-G solvation = -23.649135 kcal Electronic energy + Delta-G solvation = -23125.183052 eV Core-core repulsion = 19740.198634 eV Total energy + Delta-G solvation = -3384.984418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85461 -38.92632 -37.20069 -36.18978 -34.93115 -33.62720 -31.35092 -30.22700 -29.54242 -28.59792 -25.59570 -24.70719 -23.84193 -22.09307 -21.09644 -19.91358 -18.52556 -17.91425 -17.18313 -16.81706 -16.17486 -15.60638 -15.30097 -14.99110 -14.73568 -14.56057 -14.09390 -13.57899 -13.28226 -13.05297 -12.87882 -12.57440 -12.50934 -12.31164 -12.04226 -11.68526 -11.60701 -11.52237 -11.15660 -10.98486 -10.68034 -10.44677 -10.17143 -10.04853 -9.65934 -9.27037 -9.22990 -9.03464 -8.52829 -7.66962 -7.53166 -6.82433 -4.45109 2.16070 2.55917 2.77460 2.94969 3.05214 3.06818 3.12959 3.28064 3.65868 3.89002 4.40288 4.53767 4.63822 4.91950 4.99852 5.11119 5.21771 5.36959 5.54917 5.60309 5.68515 5.76394 5.82457 6.00048 6.13617 6.32097 6.46132 6.66591 6.72964 6.94567 6.97898 7.16695 7.18479 7.33858 7.50833 7.69337 7.78725 7.92223 8.11610 8.13521 8.45546 8.69338 8.77125 8.79869 10.11764 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.004902 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.033356 B = 5710.051068 C = 6289.620562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 H 0.159 0.841 4 C 0.519 3.481 5 O -0.548 6.548 6 N -0.719 5.719 7 C 0.097 3.903 8 C 0.095 3.905 9 N -0.618 5.618 10 C 0.573 3.427 11 O -0.535 6.535 12 C -0.128 4.128 13 C -0.252 4.252 14 C -0.094 4.094 15 C -0.210 4.210 16 C 0.101 3.899 17 C -0.460 4.460 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.782 5.782 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.094 4.094 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.396 0.604 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.285 0.715 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -9.171 7.519 12.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.000 4.000 3 H 0.176 0.824 4 C 0.305 3.695 5 O -0.425 6.425 6 N -0.371 5.371 7 C -0.028 4.028 8 C -0.029 4.029 9 N -0.355 5.355 10 C 0.366 3.634 11 O -0.411 6.411 12 C -0.131 4.131 13 C -0.271 4.271 14 C -0.112 4.112 15 C -0.230 4.230 16 C 0.098 3.902 17 C -0.488 4.488 18 H 0.099 0.901 19 C -0.147 4.147 20 N -0.406 5.406 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.114 4.114 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.232 0.768 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.813 -9.262 7.085 12.269 hybrid contribution 0.741 -0.045 -0.150 0.758 sum -3.072 -9.307 6.935 12.006 Atomic orbital electron populations 1.22184 0.92624 1.02836 1.04236 1.22267 0.96231 1.00342 0.81164 0.82387 1.20509 0.76777 0.81042 0.91207 1.90758 1.56990 1.64638 1.30140 1.45398 1.63270 1.18313 1.10161 1.21772 1.00581 0.95820 0.84676 1.21840 0.99851 0.81289 0.99876 1.48216 1.64972 1.05599 1.16722 1.18969 0.75215 0.88558 0.80633 1.90714 1.45720 1.70422 1.34291 1.19388 1.01101 0.89623 1.02961 1.21263 1.04009 0.94702 1.07158 1.20494 0.98268 0.93619 0.98849 1.21147 0.98586 0.98047 1.05229 1.17584 0.90607 0.91503 0.90474 1.19574 1.20310 1.01037 1.07919 0.90061 1.25977 0.97804 0.94409 0.96469 1.69792 1.35790 1.17630 1.17438 0.86322 0.81610 0.79866 0.78726 1.18744 1.20211 1.18905 1.21556 0.98551 0.94145 0.97131 0.90226 0.89561 0.92157 0.76846 0.89532 0.91117 0.87069 0.90762 0.86154 0.88683 0.88558 0.90346 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.42 37.16 0.31 -1.69 16 2 C 0.11 1.61 2.28 -68.91 -0.16 1.45 16 3 H 0.16 2.76 4.59 -51.93 -0.24 2.52 16 4 C 0.52 7.71 7.10 -11.73 -0.08 7.63 16 5 O -0.55 -9.75 17.80 5.56 0.10 -9.65 16 6 N -0.72 -8.24 5.42 -61.32 -0.33 -8.58 16 7 C 0.10 0.94 7.34 -4.51 -0.03 0.90 16 8 C 0.09 1.14 6.39 -3.63 -0.02 1.12 16 9 N -0.62 -9.96 2.62 -167.64 -0.44 -10.40 16 10 C 0.57 12.06 7.53 -12.31 -0.09 11.96 16 11 O -0.53 -12.70 16.11 5.32 0.09 -12.61 16 12 C -0.13 -2.93 5.54 -105.03 -0.58 -3.52 16 13 C -0.25 -5.17 7.51 -38.92 -0.29 -5.46 16 14 C -0.09 -1.97 10.01 -39.72 -0.40 -2.37 16 15 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 16 C 0.10 2.62 5.56 -106.87 -0.59 2.03 16 17 C -0.46 -11.90 9.05 -37.73 -0.34 -12.24 16 18 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 19 C 0.07 1.81 5.15 -17.34 -0.09 1.72 16 20 N -0.78 -20.47 10.96 55.55 0.61 -19.86 16 21 Si 0.91 18.52 29.59 -169.99 -5.03 13.49 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.12 6.63 -51.93 -0.34 0.78 16 28 H 0.06 0.65 7.49 -51.93 -0.39 0.26 16 29 H 0.40 3.81 8.80 -40.82 -0.36 3.45 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.11 1.42 7.07 -51.93 -0.37 1.05 16 33 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 34 H 0.12 2.08 2.42 -52.49 -0.13 1.95 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 38 H 0.13 3.65 5.99 -52.49 -0.31 3.33 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -31.06 310.92 -7.58 -38.64 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.19 Total: 10.81 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.07 Total: -6.51 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.16 Total: -38.84 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.18 Total: -22.27 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.06 -7.58 -38.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075649562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.991 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds