Wall clock time and date at job start Tue Mar 31 2020 02:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.57065 * 2 1 4 4 C 1.50435 * 109.56767 * 120.24458 * 2 1 3 5 5 O 1.21281 * 118.48569 * 287.13522 * 4 2 1 6 6 N 1.33381 * 123.02510 * 107.11188 * 4 2 1 7 7 C 1.45647 * 124.58922 * 4.31431 * 6 4 2 8 8 C 1.52988 * 110.77595 * 338.10520 * 7 6 4 9 9 N 1.47051 * 109.52051 * 239.65614 * 2 1 3 10 10 C 1.34776 * 121.35083 * 102.92597 * 9 2 1 11 11 O 1.21547 * 120.00295 * 177.00300 * 10 9 2 12 12 C 1.47888 * 119.99999 * 356.99661 * 10 9 2 13 13 C 1.39921 * 120.02425 * 333.30839 * 12 10 9 14 14 C 1.38326 * 120.35729 * 179.73761 * 13 12 10 15 15 C 1.37759 * 120.41395 * 0.56293 * 14 13 12 16 16 C 1.40754 * 120.03598 * 359.69520 * 15 14 13 17 17 C 1.41433 * 120.17437 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00324 * 25.30137 * 17 16 15 19 19 C 1.39944 * 119.99891 * 205.30010 * 17 16 15 20 20 N 1.30833 * 119.99653 * 16.95183 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 196.95472 * 19 17 16 22 22 H 1.48500 * 109.47465 * 59.99763 * 21 19 17 23 23 H 1.48506 * 109.46992 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47005 * 299.99813 * 21 19 17 25 25 C 1.39002 * 120.02534 * 153.58005 * 12 10 9 26 26 H 1.08995 * 109.46824 * 299.76253 * 1 2 3 27 27 H 1.09001 * 109.46576 * 59.76034 * 1 2 3 28 28 H 1.08993 * 109.47056 * 179.75951 * 1 2 3 29 29 H 0.96998 * 117.70799 * 184.34388 * 6 4 2 30 30 H 1.08994 * 109.22087 * 217.76860 * 7 6 4 31 31 H 1.09004 * 109.18084 * 98.41251 * 7 6 4 32 32 H 1.08993 * 109.71958 * 166.39387 * 8 7 6 33 33 H 1.09003 * 109.71957 * 287.00755 * 8 7 6 34 34 H 1.08000 * 119.82244 * 359.97438 * 13 12 10 35 35 H 1.08000 * 119.79582 * 180.25158 * 14 13 12 36 36 H 1.07995 * 119.98060 * 179.71776 * 15 14 13 37 37 H 0.97001 * 119.99843 * 179.97438 * 20 19 17 38 38 H 1.07997 * 120.19902 * 359.95812 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0339 -0.7140 1.2245 5 8 1.9317 -0.1615 2.2993 6 7 2.5874 -1.9268 1.1827 7 6 2.8567 -2.6710 -0.0400 8 6 1.9730 -2.1720 -1.1848 9 7 2.0215 -0.7002 -1.1961 10 6 2.4984 -0.0225 -2.2590 11 8 2.9487 -0.6265 -3.2128 12 6 2.4738 1.4562 -2.2648 13 6 1.5152 2.1434 -1.5121 14 6 1.4893 3.5264 -1.5082 15 6 2.3991 4.2431 -2.2542 16 6 3.3674 3.5691 -3.0219 17 6 4.3032 4.3019 -3.7884 18 1 4.5636 5.3103 -3.5027 19 6 4.8917 3.7203 -4.9170 20 7 4.3565 2.6565 -5.4589 21 14 6.4414 4.4626 -5.6496 22 1 7.5244 4.4503 -4.6337 23 1 6.8616 3.6658 -6.8302 24 1 6.1704 5.8617 -6.0672 25 6 3.3993 2.1643 -3.0226 26 1 -0.3633 0.5101 0.8921 27 1 -0.3632 0.5176 -0.8879 28 1 -0.3633 -1.0276 -0.0043 29 1 2.8271 -2.3425 2.0257 30 1 2.6572 -3.7286 0.1324 31 1 3.9041 -2.5435 -0.3135 32 1 2.3457 -2.5596 -2.1329 33 1 0.9468 -2.5049 -1.0293 34 1 0.7941 1.5911 -0.9278 35 1 0.7480 4.0477 -0.9207 36 1 2.3696 5.3226 -2.2497 37 1 4.7642 2.2535 -6.2414 38 1 4.1386 1.6379 -3.6080 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075649562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:27 Heat of formation + Delta-G solvation = -45.164806 kcal Electronic energy + Delta-G solvation = -23126.116041 eV Core-core repulsion = 19740.198634 eV Total energy + Delta-G solvation = -3385.917407 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14122 -40.39486 -38.91163 -37.54285 -36.22568 -35.33062 -32.61904 -31.88072 -31.31362 -29.79293 -27.37969 -25.99667 -24.96747 -23.63253 -22.86578 -21.39476 -19.80918 -19.46700 -18.43971 -18.23171 -17.48860 -17.08428 -16.94075 -16.43509 -16.13806 -15.95581 -15.46387 -15.03552 -14.90511 -14.51523 -14.26956 -14.17119 -13.78665 -13.52780 -13.34513 -13.15786 -12.95216 -12.82215 -12.63845 -12.48056 -12.44250 -12.05985 -11.89907 -11.44410 -11.40459 -11.07712 -10.69542 -10.22525 -9.86274 -9.46109 -9.37336 -8.66347 -6.39282 0.38161 0.97749 1.36096 1.40394 1.47270 1.50022 1.70320 1.93647 2.18502 2.22428 2.72883 3.32791 3.53732 3.63620 3.75617 3.99255 4.08269 4.15746 4.38071 4.46383 4.55415 4.62206 4.71449 4.75068 4.83654 4.89056 5.06392 5.14431 5.16731 5.25798 5.35581 5.50692 5.75192 5.80041 5.92296 6.01208 6.12583 6.14606 6.28847 6.57887 6.86759 6.92257 7.03917 7.11468 8.29862 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.004902 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.033356 B = 5710.051068 C = 6289.620562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 H 0.134 0.866 4 C 0.519 3.481 5 O -0.581 6.581 6 N -0.705 5.705 7 C 0.100 3.900 8 C 0.085 3.915 9 N -0.606 5.606 10 C 0.570 3.430 11 O -0.573 6.573 12 C -0.139 4.139 13 C -0.231 4.231 14 C -0.095 4.095 15 C -0.217 4.217 16 C 0.069 3.931 17 C -0.498 4.498 18 H 0.084 0.916 19 C 0.030 3.970 20 N -0.824 5.824 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.253 1.253 25 C -0.129 4.129 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.410 0.590 30 H 0.138 0.862 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.287 0.713 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -10.416 9.308 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.005 4.005 3 H 0.151 0.849 4 C 0.305 3.695 5 O -0.461 6.461 6 N -0.357 5.357 7 C -0.025 4.025 8 C -0.036 4.036 9 N -0.341 5.341 10 C 0.362 3.638 11 O -0.453 6.453 12 C -0.143 4.143 13 C -0.249 4.249 14 C -0.113 4.113 15 C -0.237 4.237 16 C 0.067 3.933 17 C -0.527 4.527 18 H 0.102 0.898 19 C -0.185 4.185 20 N -0.450 5.450 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.177 1.177 25 C -0.150 4.150 26 H 0.110 0.890 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.247 0.753 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.175 0.825 35 H 0.155 0.845 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.175 -10.551 8.921 14.754 hybrid contribution 1.012 0.222 -0.529 1.163 sum -4.164 -10.329 8.392 13.945 Atomic orbital electron populations 1.22173 0.90048 1.04679 1.04565 1.22274 0.98198 0.99129 0.80863 0.84912 1.20330 0.77048 0.81823 0.90293 1.90754 1.58717 1.65692 1.30940 1.45319 1.61560 1.17264 1.11525 1.21927 0.99536 0.98070 0.82918 1.22240 1.02423 0.78259 1.00698 1.48142 1.63084 1.07513 1.15368 1.18704 0.75622 0.87953 0.81522 1.90688 1.47667 1.70826 1.36136 1.19741 1.00744 0.91398 1.02373 1.21787 1.02950 0.95002 1.05183 1.20971 0.98201 0.93916 0.98249 1.21435 0.98431 0.98915 1.04910 1.17938 0.91864 0.91897 0.91637 1.19847 1.22130 1.01584 1.09140 0.89832 1.26851 1.00559 0.94595 0.96469 1.69895 1.37495 1.19398 1.18197 0.85240 0.77222 0.79355 0.77868 1.18493 1.19560 1.17730 1.21367 0.99863 0.94530 0.99226 0.89013 0.89893 0.89731 0.75320 0.84416 0.91932 0.87916 0.87435 0.82466 0.84461 0.87396 0.90224 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.42 71.99 0.61 -2.73 16 2 C 0.10 2.84 2.28 44.06 0.10 2.94 16 3 H 0.13 4.43 4.59 -2.39 -0.01 4.42 16 4 C 0.52 14.09 7.10 87.79 0.62 14.72 16 5 O -0.58 -19.47 17.80 -3.03 -0.05 -19.52 16 6 N -0.71 -13.75 5.42 -467.10 -2.53 -16.28 16 7 C 0.10 1.56 7.34 86.54 0.63 2.20 16 8 C 0.09 1.80 6.39 86.23 0.55 2.35 16 9 N -0.61 -18.59 2.62 -802.56 -2.10 -20.69 16 10 C 0.57 24.29 7.53 86.80 0.65 24.95 16 11 O -0.57 -28.22 16.11 -3.86 -0.06 -28.28 16 12 C -0.14 -6.57 5.54 -20.13 -0.11 -6.68 16 13 C -0.23 -9.21 7.51 22.70 0.17 -9.04 16 14 C -0.10 -3.85 10.01 22.18 0.22 -3.63 16 15 C -0.22 -10.25 9.78 22.77 0.22 -10.02 16 16 C 0.07 3.75 5.56 -21.32 -0.12 3.63 16 17 C -0.50 -27.10 9.05 23.47 0.21 -26.88 16 18 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 19 C 0.03 1.58 5.15 85.26 0.44 2.02 16 20 N -0.82 -45.82 10.96 21.83 0.24 -45.58 16 21 Si 0.98 39.36 29.59 68.60 2.03 41.39 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 25 C -0.13 -7.13 8.23 23.01 0.19 -6.94 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.08 1.85 6.63 -2.39 -0.02 1.83 16 28 H 0.08 1.43 7.49 -2.39 -0.02 1.41 16 29 H 0.41 6.37 8.80 -92.71 -0.82 5.56 16 30 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.10 2.45 7.07 -2.39 -0.02 2.43 16 33 H 0.11 1.63 7.50 -2.39 -0.02 1.61 16 34 H 0.16 5.04 2.42 -2.91 -0.01 5.04 16 35 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 38 H 0.10 5.95 5.99 -2.91 -0.02 5.94 16 Total: -1.00 -73.13 310.92 2.21 -70.92 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.30 Total: 31.17 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.39 Total: -13.12 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -4.40 Total: -82.56 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.12 Total: -47.80 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -73.13 2.21 -70.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075649562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.754 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds