Wall clock time and date at job start Tue Mar 31 2020 02:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42107 * 110.54446 * 2 1 4 4 O 1.42099 * 110.54460 * 223.24818 * 2 1 3 5 5 N 1.65601 * 104.45029 * 111.62310 * 2 1 3 6 6 C 1.46931 * 120.66041 * 270.02287 * 5 2 1 7 7 C 1.53179 * 108.85562 * 233.84458 * 6 5 2 8 8 C 1.53093 * 109.30880 * 305.09573 * 7 6 5 9 9 C 1.52776 * 109.54463 * 60.87359 * 8 7 6 10 10 C 1.54083 * 109.63195 * 178.82401 * 9 8 7 11 11 C 1.55211 * 102.87891 * 262.38182 * 10 9 8 12 12 C 1.55151 * 101.51762 * 324.53332 * 11 10 9 13 13 N 1.46790 * 110.06329 * 60.74205 * 9 8 7 14 14 C 1.36931 * 125.69865 * 300.47883 * 13 9 8 15 15 H 1.08000 * 120.00350 * 327.69493 * 14 13 9 16 16 C 1.38813 * 119.99993 * 147.69175 * 14 13 9 17 17 N 1.31620 * 119.99718 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.72086 * 16 14 13 19 19 H 1.48495 * 109.46798 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46631 * 120.00334 * 18 16 14 21 21 H 1.48497 * 109.47207 * 240.00344 * 18 16 14 22 22 C 1.46992 * 120.65549 * 89.99921 * 5 2 1 23 23 H 1.09004 * 109.47218 * 308.37359 * 1 2 3 24 24 H 1.08998 * 109.47000 * 68.37358 * 1 2 3 25 25 H 1.08996 * 109.47338 * 188.37556 * 1 2 3 26 26 H 1.08999 * 109.57021 * 353.65004 * 6 5 2 27 27 H 1.08993 * 109.57439 * 114.02552 * 6 5 2 28 28 H 1.08999 * 109.50487 * 65.05089 * 7 6 5 29 29 H 1.09000 * 109.49574 * 185.12135 * 7 6 5 30 30 H 1.09001 * 109.46065 * 300.85078 * 8 7 6 31 31 H 1.08997 * 109.45746 * 180.89629 * 8 7 6 32 32 H 1.08998 * 110.73584 * 20.72784 * 10 9 8 33 33 H 1.08995 * 110.73289 * 144.03621 * 10 9 8 34 34 H 1.09004 * 111.00279 * 82.78095 * 11 10 9 35 35 H 1.09002 * 110.99921 * 206.57674 * 11 10 9 36 36 H 1.08994 * 110.49464 * 278.33206 * 12 11 10 37 37 H 1.09001 * 110.34284 * 155.93631 * 12 11 10 38 38 H 0.97007 * 119.99739 * 179.97438 * 17 16 14 39 39 H 1.08994 * 109.59131 * 7.09261 * 22 5 2 40 40 H 1.08998 * 109.70852 * 246.72516 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4136 0.3166 2.6311 7 6 3.7936 0.0625 3.2455 8 6 3.9235 -1.4205 3.6025 9 6 3.7850 -2.2649 2.3368 10 6 3.9449 -3.7563 2.6894 11 6 5.4322 -4.0358 2.3447 12 6 5.6368 -3.1324 1.1001 13 7 4.8459 -1.9199 1.3827 14 6 5.0616 -0.6809 0.8412 15 1 4.2278 -0.0199 0.6559 16 6 6.3520 -0.2743 0.5304 17 7 7.3680 -1.0800 0.7558 18 14 6.6455 1.4130 -0.2156 19 1 5.3475 2.1169 -0.3736 20 1 7.5305 2.2021 0.6782 21 1 7.2917 1.2613 -1.5440 22 6 2.4142 -2.0339 1.6995 23 1 -0.3634 0.6380 0.8057 24 1 -0.3633 0.3787 -0.9553 25 1 -0.3634 -1.0166 0.1497 26 1 2.3507 1.3498 2.2896 27 1 1.6415 0.1290 3.3772 28 1 4.5673 0.3329 2.5269 29 1 3.9072 0.6653 4.1466 30 1 3.1398 -1.6940 4.3090 31 1 4.8988 -1.6011 4.0546 32 1 3.7564 -3.9246 3.7497 33 1 3.2849 -4.3705 2.0768 34 1 6.0863 -3.7335 3.1627 35 1 5.5844 -5.0855 2.0934 36 1 5.2643 -3.6278 0.2036 37 1 6.6908 -2.8795 0.9845 38 1 8.2697 -0.7960 0.5383 39 1 2.3647 -2.5512 0.7414 40 1 1.6352 -2.4137 2.3606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096071475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:19 Heat of formation + Delta-G solvation = -29.377736 kcal Electronic energy + Delta-G solvation = -23874.675895 eV Core-core repulsion = 20624.887018 eV Total energy + Delta-G solvation = -3249.788877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.09811 -36.61230 -35.48116 -35.28557 -32.63283 -31.36382 -29.59768 -29.28885 -29.13434 -24.87400 -24.13239 -23.67426 -20.93769 -20.09074 -18.73426 -18.03538 -17.12288 -16.97409 -15.74774 -15.38032 -14.77029 -14.37038 -13.98057 -13.78647 -13.58239 -13.28778 -12.97623 -12.92548 -12.65745 -12.39685 -12.00129 -11.73893 -11.55403 -11.50257 -11.27256 -11.17494 -10.81128 -10.79292 -10.73208 -10.62185 -10.37921 -10.18204 -9.87706 -9.81362 -9.63505 -9.41864 -9.32151 -8.61362 -8.09041 -6.42859 -5.54399 -3.14001 0.66535 3.13136 3.48152 3.55987 3.69400 4.42576 4.48168 4.60404 4.84861 5.15809 5.21641 5.39619 5.55151 5.57369 5.69571 5.73343 5.80444 5.85010 5.90792 6.04899 6.09562 6.19775 6.27465 6.35314 6.40018 6.47060 6.62801 6.71288 6.79532 6.87146 7.05078 7.19548 7.25999 7.49870 7.56922 7.84685 8.03282 8.60429 9.29767 9.91680 10.66884 11.40441 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.011193 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.539468 B = 2501.016802 C = 3507.020503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.689 4.689 2 S 2.603 3.397 3 O -0.953 6.953 4 O -0.935 6.935 5 N -0.979 5.979 6 C 0.128 3.872 7 C -0.149 4.149 8 C -0.103 4.103 9 C 0.173 3.827 10 C -0.122 4.122 11 C -0.131 4.131 12 C 0.115 3.885 13 N -0.569 5.569 14 C -0.206 4.206 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.880 3.120 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.119 3.881 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.121 0.879 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.002 0.998 37 H 0.117 0.883 38 H 0.252 0.748 39 H 0.086 0.914 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.805 -1.735 4.639 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.836 4.836 2 S 2.694 3.306 3 O -0.944 6.944 4 O -0.925 6.925 5 N -0.817 5.817 6 C 0.003 3.997 7 C -0.188 4.188 8 C -0.142 4.142 9 C 0.082 3.918 10 C -0.160 4.160 11 C -0.170 4.170 12 C -0.010 4.010 13 N -0.292 5.292 14 C -0.335 4.335 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.547 5.547 18 Si 0.709 3.291 19 H -0.186 1.186 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.009 4.009 23 H 0.139 0.861 24 H 0.137 0.863 25 H 0.140 0.860 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.134 0.866 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.086 -1.321 3.847 12.752 hybrid contribution -0.612 0.711 -0.043 0.939 sum -12.698 -0.610 3.805 13.270 Atomic orbital electron populations 1.30796 1.31736 1.10712 1.10340 1.05360 0.76616 0.74584 0.74058 1.93592 1.76714 1.38225 1.85834 1.93628 1.76118 1.61052 1.61740 1.57402 1.83011 1.14532 1.26724 1.21304 0.98071 0.92802 0.87516 1.22215 0.98688 0.96581 1.01275 1.21692 0.99962 0.95717 0.96852 1.20455 0.89289 0.91952 0.90127 1.22528 0.98002 0.95812 0.99702 1.22807 0.94939 0.98668 1.00569 1.22257 1.02013 0.85391 0.91302 1.44203 1.32273 1.05695 1.46983 1.18815 0.91030 0.90692 1.32968 0.91380 1.25197 0.95671 0.97637 1.01001 1.69544 0.98409 1.34557 1.52218 0.86463 0.78967 0.85109 0.78560 1.18556 1.21513 1.21612 1.22055 0.98387 0.79024 1.01415 0.86081 0.86329 0.85984 0.90055 0.93183 0.86125 0.93341 0.94496 0.92350 0.92258 0.92229 0.92107 0.92977 0.98019 0.86627 0.93772 0.89546 0.93324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.69 -7.84 10.99 101.05 1.11 -6.73 16 2 S 2.60 46.08 4.84 -107.50 -0.52 45.56 16 3 O -0.95 -19.99 15.97 -57.54 -0.92 -20.91 16 4 O -0.94 -20.12 16.55 -57.54 -0.95 -21.07 16 5 N -0.98 -17.00 1.81 -113.63 -0.21 -17.21 16 6 C 0.13 2.08 6.20 -3.71 -0.02 2.05 16 7 C -0.15 -2.80 5.61 -26.59 -0.15 -2.94 16 8 C -0.10 -1.88 4.72 -26.80 -0.13 -2.01 16 9 C 0.17 3.37 0.77 -131.24 -0.10 3.27 16 10 C -0.12 -2.07 6.00 -24.99 -0.15 -2.22 16 11 C -0.13 -2.51 7.10 -24.42 -0.17 -2.68 16 12 C 0.11 2.76 6.82 -2.36 -0.02 2.74 16 13 N -0.57 -13.88 2.82 -155.63 -0.44 -14.32 16 14 C -0.21 -5.57 6.34 -15.06 -0.10 -5.66 16 15 H 0.07 1.82 3.58 -52.49 -0.19 1.63 16 16 C 0.00 0.08 5.45 -17.43 -0.09 -0.02 16 17 N -0.90 -26.16 10.62 55.49 0.59 -25.57 16 18 Si 0.88 22.92 29.55 -169.99 -5.02 17.90 16 19 H -0.26 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 22 C 0.12 2.05 5.14 -3.81 -0.02 2.03 16 23 H 0.12 1.15 8.14 -51.92 -0.42 0.73 16 24 H 0.12 1.18 8.14 -51.92 -0.42 0.75 16 25 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.08 1.30 6.86 -51.93 -0.36 0.94 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.12 2.82 4.71 -51.93 -0.24 2.57 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.88 7.81 -51.93 -0.41 0.48 16 33 H 0.06 0.93 7.83 -51.93 -0.41 0.52 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 37 H 0.12 3.15 5.23 -51.93 -0.27 2.88 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.09 1.60 6.86 -51.93 -0.36 1.24 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 309.39 15.07 4.66 4.66 Total: -1.00 -33.26 309.39 -8.66 -41.92 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.01 Total: 1.20 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 0.16 Total: -12.16 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.06 Total: -57.10 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.87 Total: -41.98 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.52 Total: 45.56 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.26 -8.66 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096071475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.547 kcal (2) G-P(sol) polarization free energy of solvation -33.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds