Wall clock time and date at job start Tue Mar 31 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00333 * 2 1 4 4 C 1.53038 * 109.46077 * 239.99492 * 3 2 1 5 5 C 1.53189 * 109.31471 * 178.62665 * 4 3 2 6 6 N 1.46933 * 108.77260 * 54.63744 * 5 4 3 7 7 S 1.65595 * 120.62849 * 126.37086 * 6 5 4 8 8 O 1.42105 * 106.40149 * 203.53935 * 7 6 5 9 9 O 1.42098 * 106.40317 * 336.45808 * 7 6 5 10 10 N 1.65606 * 107.22013 * 90.00117 * 7 6 5 11 11 C 1.46489 * 120.00129 * 89.99663 * 10 7 6 12 12 C 1.46504 * 119.99819 * 269.99910 * 10 7 6 13 13 C 1.50693 * 109.47172 * 94.99586 * 12 10 7 14 14 H 1.08000 * 119.99929 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00099 * 179.97438 * 13 12 10 16 16 N 1.31521 * 120.00341 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00093 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47205 * 89.99726 * 17 15 13 19 19 H 1.48495 * 109.47322 * 209.99992 * 17 15 13 20 20 H 1.48502 * 109.47122 * 329.99662 * 17 15 13 21 21 C 1.46925 * 118.73831 * 306.64055 * 6 5 4 22 22 C 1.52761 * 109.00629 * 53.31483 * 21 6 5 23 23 H 1.07995 * 120.00180 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.99871 * 179.97438 * 2 1 3 26 26 H 1.08995 * 109.46023 * 359.97387 * 3 2 1 27 27 H 1.08998 * 109.49523 * 58.67906 * 4 3 2 28 28 H 1.08998 * 109.50031 * 298.57950 * 4 3 2 29 29 H 1.09001 * 109.58785 * 294.85560 * 5 4 3 30 30 H 1.09000 * 109.70656 * 174.49247 * 5 4 3 31 31 H 1.08998 * 109.47302 * 90.00098 * 11 10 7 32 32 H 1.09005 * 109.47350 * 210.00090 * 11 10 7 33 33 H 1.08996 * 109.47412 * 330.00152 * 11 10 7 34 34 H 1.08996 * 109.47155 * 215.00149 * 12 10 7 35 35 H 1.09007 * 109.47086 * 334.99657 * 12 10 7 36 36 H 0.96998 * 120.00080 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.58679 * 173.14303 * 21 6 5 38 38 H 1.09000 * 109.58887 * 293.57261 * 21 6 5 39 39 H 1.09001 * 109.56870 * 185.55054 * 22 21 6 40 40 H 1.08996 * 109.36683 * 65.49385 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9434 1.3857 -1.2496 5 6 3.6816 2.7280 -1.2636 6 7 4.4144 2.8778 0.0011 7 16 6.0371 3.2084 0.0018 8 8 6.5382 2.7554 1.2521 9 8 6.5396 2.7545 -1.2474 10 7 6.2017 4.8562 0.0014 11 6 6.2738 5.5855 1.2698 12 6 6.2753 5.5846 -1.2676 13 6 4.9028 6.0818 -1.6417 14 1 4.0600 5.8761 -0.9984 15 6 4.7230 6.8000 -2.8048 16 7 3.5253 7.2344 -3.1311 17 14 6.1807 7.1564 -3.9172 18 1 6.3257 6.0611 -4.9094 19 1 5.9590 8.4415 -4.6274 20 1 7.4165 7.2499 -3.0991 21 6 3.6814 2.7229 1.2649 22 6 2.9421 1.3862 1.2506 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9354 0.0004 26 1 1.3552 2.1334 -0.0005 27 1 2.3195 1.3044 -2.1396 28 1 3.6684 0.5719 -1.2373 29 1 2.9618 3.5399 -1.3672 30 1 4.3831 2.7529 -2.0975 31 1 7.3142 5.6643 1.5851 32 1 5.8572 6.5843 1.1389 33 1 5.7035 5.0508 2.0293 34 1 6.9523 6.4322 -1.1613 35 1 6.6458 4.9193 -2.0475 36 1 3.3988 7.7394 -3.9496 37 1 4.3829 2.7419 2.0989 38 1 2.9615 3.5344 1.3717 39 1 2.3172 1.3051 2.1400 40 1 3.6670 0.5723 1.2393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111349050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:18 Heat of formation + Delta-G solvation = -60.065602 kcal Electronic energy + Delta-G solvation = -22450.145380 eV Core-core repulsion = 19199.025777 eV Total energy + Delta-G solvation = -3251.119603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.60579 -36.78478 -35.61914 -35.28836 -34.52449 -32.45474 -30.86589 -30.47562 -28.40912 -25.19375 -24.32876 -23.09229 -21.88843 -20.42678 -19.79022 -18.34826 -17.50748 -16.83168 -16.73074 -15.75772 -14.98297 -14.71412 -14.33778 -14.23540 -14.09970 -13.76104 -13.53375 -13.15041 -12.74576 -12.54603 -12.40751 -12.29383 -12.11629 -11.83216 -11.51341 -11.38547 -11.34357 -11.24385 -10.97690 -10.76217 -10.74462 -10.71856 -10.49611 -10.22245 -10.11427 -9.60704 -9.29719 -8.67664 -8.62174 -8.08851 -6.17648 -4.18025 1.19824 2.25698 3.25300 3.31773 3.35673 3.42336 4.05107 4.33953 4.71039 4.82179 4.83784 5.10899 5.15944 5.22018 5.33206 5.40067 5.51807 5.54402 5.64031 5.73064 5.84423 5.90635 5.99824 6.07134 6.12343 6.14949 6.18768 6.28361 6.42519 6.53091 6.56372 6.62609 6.79941 6.81668 6.94908 7.11544 7.40113 7.53406 8.39721 8.86094 9.43377 10.94550 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.006405 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.338025 B = 4370.416488 C = 5304.574078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.062 4.062 4 C -0.122 4.122 5 C 0.127 3.873 6 N -1.000 6.000 7 S 2.788 3.212 8 O -0.997 6.997 9 O -0.980 6.980 10 N -0.993 5.993 11 C 0.106 3.894 12 C 0.213 3.787 13 C -0.540 4.540 14 H 0.081 0.919 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.868 3.132 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.121 3.879 22 C -0.120 4.120 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.035 0.965 35 H 0.042 0.958 36 H 0.265 0.735 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.671 -9.824 7.591 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.159 4.159 3 C -0.080 4.080 4 C -0.161 4.161 5 C 0.001 3.999 6 N -0.840 5.840 7 S 2.797 3.203 8 O -0.981 6.981 9 O -0.964 6.964 10 N -0.834 5.834 11 C -0.040 4.040 12 C 0.089 3.911 13 C -0.579 4.579 14 H 0.099 0.901 15 C -0.127 4.127 16 N -0.531 5.531 17 Si 0.695 3.305 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.189 1.189 21 C -0.005 4.005 22 C -0.159 4.159 23 H 0.112 0.888 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.035 -10.316 7.449 12.885 hybrid contribution 0.179 0.630 -0.715 0.970 sum -1.855 -9.686 6.733 11.941 Atomic orbital electron populations 1.23822 0.95950 1.01624 1.02191 1.22995 0.95839 0.98321 0.98775 1.20350 0.96840 0.95382 0.95460 1.21900 0.98536 0.98350 0.97336 1.21378 0.97022 0.96668 0.84807 1.58036 1.28351 1.86073 1.11490 1.01654 0.72918 0.73105 0.72585 1.93526 1.78566 1.80835 1.45190 1.93546 1.78131 1.80292 1.44471 1.57478 1.87733 1.25441 1.12729 1.21236 1.00368 0.98514 0.83922 1.19603 0.98497 0.92850 0.80114 1.21442 0.93543 1.35276 1.07604 0.90064 1.24844 0.95552 0.94959 0.97304 1.69889 1.21392 1.37039 1.24810 0.86966 0.83652 0.78279 0.81627 1.19695 1.21052 1.18863 1.21255 0.96485 0.97282 0.85490 1.21781 0.98594 0.98019 0.97524 0.88847 0.88570 0.87661 0.90391 0.90831 0.91770 0.90416 0.88702 0.93710 0.90590 0.92680 0.94668 0.94007 0.92508 0.89479 0.91505 0.91015 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 14.32 29.01 0.42 -1.54 16 2 C -0.14 -1.50 8.77 -36.03 -0.32 -1.82 16 3 C -0.06 -0.75 2.44 -91.73 -0.22 -0.97 16 4 C -0.12 -1.67 5.34 -26.61 -0.14 -1.81 16 5 C 0.13 2.15 6.48 -3.71 -0.02 2.12 16 6 N -1.00 -17.06 3.35 -113.76 -0.38 -17.44 16 7 S 2.79 55.05 6.11 -107.50 -0.66 54.39 16 8 O -1.00 -20.02 15.79 -57.17 -0.90 -20.92 16 9 O -0.98 -21.99 15.28 -57.17 -0.87 -22.87 16 10 N -0.99 -20.13 3.23 -123.06 -0.40 -20.53 16 11 C 0.11 1.79 10.31 59.84 0.62 2.40 16 12 C 0.21 4.95 4.48 -5.19 -0.02 4.93 16 13 C -0.54 -14.05 9.94 -34.44 -0.34 -14.39 16 14 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 15 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 17 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 21 C 0.12 1.69 6.45 -3.93 -0.03 1.67 16 22 C -0.12 -1.44 5.33 -26.83 -0.14 -1.58 16 23 H 0.09 0.79 8.06 -52.49 -0.42 0.36 16 24 H 0.10 0.93 7.83 -52.49 -0.41 0.52 16 25 H 0.11 1.04 8.06 -52.48 -0.42 0.62 16 26 H 0.08 0.97 7.78 -51.93 -0.40 0.56 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.09 1.78 6.92 -51.93 -0.36 1.42 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 34 H 0.04 0.80 7.17 -51.93 -0.37 0.43 16 35 H 0.04 1.01 6.34 -51.92 -0.33 0.68 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -30.68 333.55 -8.84 -39.52 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.45 Total: 0.79 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -0.31 Total: -9.01 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.00 Total: -62.83 kcal Atomic # 8 Polarization: -42.01 SS G_CDS: -1.78 Total: -43.79 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Atomic # 16 Polarization: 55.05 SS G_CDS: -0.66 Total: 54.39 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.68 -8.84 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111349050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.546 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds