Wall clock time and date at job start Tue Mar 31 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.45640 * 117.70742 * 2 1 4 4 C 1.52991 * 110.77598 * 158.10071 * 3 2 1 5 5 N 1.47272 * 108.18532 * 46.72194 * 4 3 2 6 6 C 1.34774 * 121.35034 * 118.47535 * 5 4 3 7 7 O 1.21550 * 120.00075 * 4.37956 * 6 5 4 8 8 C 1.47888 * 119.99935 * 184.37328 * 6 5 4 9 9 C 1.39920 * 120.02308 * 136.86863 * 8 6 5 10 10 C 1.38329 * 120.35460 * 180.02562 * 9 8 6 11 11 C 1.37753 * 120.41540 * 0.27272 * 10 9 8 12 12 C 1.40755 * 120.03456 * 359.45481 * 11 10 9 13 13 C 1.41438 * 120.17251 * 180.27296 * 12 11 10 14 14 H 1.08004 * 120.00036 * 205.40643 * 13 12 11 15 15 C 1.39930 * 120.00462 * 25.40402 * 13 12 11 16 16 N 1.30831 * 119.99817 * 16.76368 * 15 13 12 17 17 Si 1.86803 * 120.00125 * 196.76584 * 15 13 12 18 18 H 1.48493 * 109.47239 * 60.00087 * 17 15 13 19 19 H 1.48505 * 109.46620 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47044 * 299.99546 * 17 15 13 21 21 C 1.38993 * 120.02267 * 316.89425 * 8 6 5 22 22 C 1.47048 * 117.29370 * 298.74735 * 5 4 3 23 23 C 1.33381 * 117.69942 * 179.97438 * 2 1 3 24 24 O 1.21281 * 118.49111 * 4.32301 * 23 2 1 25 25 H 1.08995 * 109.46973 * 89.99910 * 1 2 3 26 26 H 1.08999 * 109.47289 * 210.00088 * 1 2 3 27 27 H 1.09004 * 109.46597 * 330.00293 * 1 2 3 28 28 H 1.09003 * 109.21713 * 37.76279 * 3 2 1 29 29 H 1.09004 * 109.21824 * 278.43133 * 3 2 1 30 30 H 1.09002 * 109.71498 * 287.05088 * 4 3 2 31 31 H 1.09000 * 109.71950 * 166.39974 * 4 3 2 32 32 H 1.07996 * 119.81954 * 0.04265 * 9 8 6 33 33 H 1.08005 * 119.79116 * 179.97438 * 10 9 8 34 34 H 1.07994 * 119.98096 * 179.72568 * 11 10 9 35 35 H 0.97002 * 120.00265 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.20833 * 359.97438 * 21 8 6 37 37 H 1.08999 * 109.56642 * 162.31087 * 22 5 4 38 38 H 1.08994 * 109.56869 * 282.67232 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1422 1.2894 0.0000 4 6 3.5696 1.1528 0.5335 5 7 4.1973 -0.0057 -0.1244 6 6 5.2928 0.1351 -0.8967 7 8 5.8296 1.2209 -0.9979 8 6 5.8419 -1.0316 -1.6209 9 6 6.2609 -0.8973 -2.9491 10 6 6.7750 -1.9842 -3.6332 11 6 6.8754 -3.2121 -3.0170 12 6 6.4643 -3.3649 -1.6795 13 6 6.5714 -4.6230 -1.0422 14 1 5.9201 -4.8671 -0.2160 15 6 7.5213 -5.5517 -1.4821 16 7 8.5140 -5.1628 -2.2403 17 14 7.3718 -7.3466 -0.9869 18 1 6.0819 -7.8909 -1.4819 19 1 8.4940 -8.1184 -1.5788 20 1 7.4205 -7.4575 0.4932 21 6 5.9416 -2.2623 -0.9827 22 6 3.5765 -1.3213 0.0905 23 6 2.0851 -1.1810 0.0005 24 8 1.4129 -2.1873 -0.0794 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8901 0.5138 28 1 1.5886 1.9854 0.6303 29 1 2.1754 1.6772 -1.0182 30 1 3.5456 0.9949 1.6118 31 1 4.1353 2.0562 0.3060 32 1 6.1827 0.0600 -3.4428 33 1 7.0953 -1.8704 -4.6583 34 1 7.2738 -4.0570 -3.5591 35 1 9.1723 -5.8065 -2.5456 36 1 5.6194 -2.3705 0.0424 37 1 3.9241 -2.0179 -0.6724 38 1 3.8456 -1.6949 1.0784 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172610210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:58 Heat of formation + Delta-G solvation = -51.350412 kcal Electronic energy + Delta-G solvation = -22781.940237 eV Core-core repulsion = 19395.754601 eV Total energy + Delta-G solvation = -3386.185636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.98277 -40.55892 -38.95487 -37.52625 -36.05617 -35.52856 -32.32340 -31.83251 -30.70688 -29.63632 -27.27455 -26.59506 -25.42875 -23.60097 -22.65181 -21.41595 -19.94721 -19.05426 -18.33521 -17.97133 -17.34058 -17.19448 -16.85570 -16.59959 -16.49843 -16.04668 -15.45625 -15.05989 -14.73335 -14.64155 -14.25781 -14.06723 -13.71546 -13.55108 -13.50138 -13.12501 -13.04536 -12.96706 -12.84600 -12.52333 -12.35278 -12.27371 -12.02972 -11.56726 -11.40188 -11.06295 -10.81063 -9.95311 -9.79666 -9.48508 -9.39406 -8.66133 -6.38480 0.46143 0.90503 1.37448 1.41167 1.49412 1.52863 1.63915 1.79809 2.05091 2.21446 2.71567 3.34311 3.48930 3.61721 3.74860 4.12570 4.15206 4.25356 4.36733 4.45126 4.52611 4.53803 4.60068 4.65610 4.85379 4.90398 4.93116 5.00291 5.10620 5.16513 5.29594 5.38440 5.51298 5.75049 5.93429 5.99722 6.09629 6.20303 6.24361 6.59068 6.87826 6.90740 6.92899 7.01260 8.31439 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.018324 B = 0.004965 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.644122 B = 5638.170908 C = 6644.214817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.603 5.603 3 C 0.102 3.898 4 C 0.090 3.910 5 N -0.610 5.610 6 C 0.579 3.421 7 O -0.568 6.568 8 C -0.120 4.120 9 C -0.192 4.192 10 C -0.110 4.110 11 C -0.164 4.164 12 C 0.078 3.922 13 C -0.493 4.493 14 H 0.083 0.917 15 C 0.038 3.962 16 N -0.824 5.824 17 Si 0.980 3.020 18 H -0.262 1.262 19 H -0.269 1.269 20 H -0.259 1.259 21 C -0.198 4.198 22 C 0.091 3.909 23 C 0.508 3.492 24 O -0.582 6.582 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.136 0.864 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.290 0.710 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 9.113 5.660 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.335 5.335 3 C -0.020 4.020 4 C -0.032 4.032 5 N -0.344 5.344 6 C 0.370 3.630 7 O -0.448 6.448 8 C -0.123 4.123 9 C -0.212 4.212 10 C -0.128 4.128 11 C -0.183 4.183 12 C 0.075 3.925 13 C -0.522 4.522 14 H 0.101 0.899 15 C -0.177 4.177 16 N -0.450 5.450 17 Si 0.801 3.199 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.183 1.183 21 C -0.218 4.218 22 C -0.035 4.035 23 C 0.296 3.704 24 O -0.462 6.462 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.129 0.871 28 H 0.154 0.846 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.653 9.132 5.463 15.781 hybrid contribution 0.421 -0.938 -0.128 1.036 sum -11.232 8.194 5.335 14.892 Atomic orbital electron populations 1.21911 0.77892 1.04380 1.02556 1.47312 1.08767 1.05922 1.71528 1.22033 0.92583 0.83981 1.03423 1.22276 0.92535 0.89951 0.98403 1.48049 1.28150 1.09006 1.49191 1.18566 0.79248 0.87907 0.77234 1.90670 1.60359 1.28695 1.65048 1.19538 1.04159 0.92960 0.95676 1.20574 1.07820 0.98461 0.94350 1.20905 0.99486 0.92992 0.99414 1.21536 1.04611 0.96980 0.95203 1.17873 0.89817 0.92990 0.91793 1.19819 1.17178 0.98962 1.16265 0.89907 1.26711 0.92782 1.05113 0.93139 1.69844 1.09193 1.38188 1.27755 0.85275 0.78986 0.75950 0.79706 1.18607 1.19357 1.18288 1.21319 1.10037 0.91257 0.99224 1.22239 0.88183 0.86738 1.06327 1.20332 0.90687 0.83483 0.75921 1.90727 1.66214 1.37225 1.52079 0.92695 0.91819 0.87094 0.84612 0.91352 0.87863 0.86930 0.87324 0.86217 0.87314 0.89969 0.86545 0.86359 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.19 127.77 1.30 2.55 16 2 N -0.60 -13.11 3.20 -851.83 -2.73 -15.84 16 3 C 0.10 1.58 6.57 86.54 0.57 2.15 16 4 C 0.09 1.79 6.53 86.23 0.56 2.35 16 5 N -0.61 -18.36 2.98 -827.30 -2.47 -20.83 16 6 C 0.58 22.58 7.34 86.80 0.64 23.21 16 7 O -0.57 -24.19 16.45 -3.87 -0.06 -24.26 16 8 C -0.12 -5.35 5.21 -20.13 -0.10 -5.45 16 9 C -0.19 -8.64 9.67 22.70 0.22 -8.42 16 10 C -0.11 -5.04 10.01 22.18 0.22 -4.82 16 11 C -0.16 -8.37 8.68 22.77 0.20 -8.17 16 12 C 0.08 4.02 5.56 -21.32 -0.12 3.90 16 13 C -0.49 -25.42 9.05 23.47 0.21 -25.20 16 14 H 0.08 4.06 7.90 -2.91 -0.02 4.04 16 15 C 0.04 1.85 5.15 85.25 0.44 2.29 16 16 N -0.82 -41.90 10.95 21.82 0.24 -41.66 16 17 Si 0.98 37.22 29.59 68.60 2.03 39.25 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 21 C -0.20 -9.20 7.14 23.01 0.16 -9.04 16 22 C 0.09 2.78 4.95 85.33 0.42 3.20 16 23 C 0.51 15.28 7.57 87.68 0.66 15.95 16 24 O -0.58 -21.82 16.25 -3.03 -0.05 -21.87 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.30 7.23 -2.39 -0.02 1.28 16 27 H 0.11 0.92 7.80 -2.39 -0.02 0.90 16 28 H 0.14 0.89 7.84 -2.39 -0.02 0.87 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 2.33 7.07 -2.39 -0.02 2.31 16 32 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 34 H 0.11 5.77 6.17 -2.91 -0.02 5.75 16 35 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 36 H 0.12 4.91 6.29 -2.91 -0.02 4.89 16 37 H 0.12 4.41 4.91 -2.39 -0.01 4.40 16 38 H 0.12 3.24 7.97 -2.39 -0.02 3.22 16 Total: -1.00 -67.90 316.40 3.43 -64.47 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 1.08 Total: 26.24 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.39 Total: -5.50 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -4.96 Total: -78.33 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -0.11 Total: -46.13 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -67.90 3.43 -64.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172610210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.120 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds