Wall clock time and date at job start Tue Mar 31 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46863 * 124.33729 * 2 1 4 4 C 1.54485 * 105.42222 * 197.02220 * 3 2 1 5 5 H 1.09000 * 110.96966 * 216.44407 * 4 3 2 6 6 N 1.46501 * 110.96731 * 92.71731 * 4 3 2 7 7 C 1.34778 * 119.99912 * 158.08889 * 6 4 3 8 8 O 1.21590 * 119.99874 * 0.02562 * 7 6 4 9 9 C 1.47634 * 120.00137 * 179.97438 * 7 6 4 10 10 C 1.40012 * 119.89814 * 180.02562 * 9 7 6 11 11 C 1.36318 * 120.11128 * 180.02562 * 10 9 7 12 12 C 1.40894 * 119.88983 * 0.02562 * 11 10 9 13 13 C 1.41106 * 120.10390 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99919 * 204.67164 * 13 12 11 15 15 C 1.40227 * 119.99951 * 24.94540 * 13 12 11 16 16 N 1.30645 * 119.99889 * 17.44796 * 15 13 12 17 17 Si 1.86800 * 119.99905 * 197.45498 * 15 13 12 18 18 H 1.48497 * 109.47290 * 89.99652 * 17 15 13 19 19 H 1.48502 * 109.46762 * 210.00215 * 17 15 13 20 20 H 1.48496 * 109.46938 * 329.99648 * 17 15 13 21 21 C 1.40891 * 119.79209 * 0.28157 * 12 11 10 22 22 C 1.36321 * 119.89051 * 359.40987 * 21 12 11 23 23 C 1.54634 * 101.80024 * 334.58121 * 4 3 2 24 24 C 1.34416 * 124.34739 * 180.02562 * 2 1 3 25 25 O 1.21274 * 124.94573 * 359.55472 * 24 2 1 26 26 H 1.08997 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46854 * 299.97040 * 1 2 3 28 28 H 1.08995 * 109.47014 * 59.97268 * 1 2 3 29 29 H 1.09004 * 110.25457 * 78.04973 * 3 2 1 30 30 H 1.08990 * 110.28258 * 316.01362 * 3 2 1 31 31 H 0.97000 * 119.99860 * 338.08799 * 6 4 3 32 32 H 1.08003 * 119.94395 * 0.02562 * 10 9 7 33 33 H 1.07997 * 120.05515 * 180.02562 * 11 10 9 34 34 H 0.96998 * 119.99659 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.05618 * 179.72834 * 21 12 11 36 36 H 1.07997 * 119.94972 * 180.32200 * 22 21 12 37 37 H 1.08998 * 110.48539 * 143.48916 * 23 4 3 38 38 H 1.08999 * 110.48364 * 266.13920 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2935 1.2127 0.0000 4 6 3.7010 0.7487 -0.4360 5 1 4.4759 1.3009 0.0958 6 7 3.8700 0.8778 -1.8854 7 6 5.1067 0.9576 -2.4153 8 8 6.0822 0.9220 -1.6902 9 6 5.2771 1.0872 -3.8760 10 6 6.5628 1.1694 -4.4241 11 6 6.7252 1.2896 -5.7722 12 6 5.5964 1.3317 -6.6144 13 6 5.7592 1.4555 -8.0105 14 1 4.9672 1.8778 -8.6112 15 6 6.9470 1.0249 -8.6188 16 7 7.7505 0.2149 -7.9823 17 14 7.3806 1.6097 -10.3391 18 1 8.1721 2.8630 -10.2511 19 1 8.1806 0.5663 -11.0295 20 1 6.1337 1.8643 -11.1042 21 6 4.3044 1.2551 -6.0576 22 6 4.1523 1.1287 -4.7088 23 6 3.6899 -0.7379 -0.0104 24 6 2.2235 -1.1098 -0.0005 25 8 1.7947 -2.2442 0.0067 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5134 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 2.3315 1.6437 1.0005 30 1 1.8992 1.9396 -0.7100 31 1 3.0918 0.9058 -2.4638 32 1 7.4275 1.1375 -3.7777 33 1 7.7173 1.3526 -6.1941 34 1 8.5719 -0.0832 -8.4032 35 1 3.4361 1.2913 -6.6988 36 1 3.1625 1.0647 -4.2815 37 1 4.2326 -1.3459 -0.7341 38 1 4.1196 -0.8530 0.9847 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270372470.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:44 Heat of formation + Delta-G solvation = -52.391816 kcal Electronic energy + Delta-G solvation = -21906.014208 eV Core-core repulsion = 18519.783414 eV Total energy + Delta-G solvation = -3386.230794 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.68962 -38.95845 -37.25610 -36.45086 -34.14143 -33.92449 -31.52812 -30.05379 -29.44050 -27.70061 -26.69600 -25.72137 -22.59384 -21.52541 -20.71518 -20.02626 -19.48955 -17.60265 -17.20166 -16.82328 -16.52658 -15.61933 -15.34957 -15.05723 -14.48956 -14.08543 -13.93591 -13.68527 -13.53815 -13.31992 -12.80541 -12.75933 -12.63810 -12.38125 -12.26761 -11.97528 -11.77766 -11.63092 -11.42084 -11.27354 -10.99738 -10.67782 -10.09121 -9.97024 -9.57808 -9.38013 -9.14097 -8.94998 -8.77908 -7.74313 -7.61636 -7.05446 -4.64333 2.16946 2.49842 2.82460 2.89133 2.93926 2.96781 3.00054 3.52494 3.71454 3.77220 4.19917 4.33414 4.54535 4.73549 4.99886 5.07888 5.17511 5.25169 5.40747 5.49234 5.52971 5.57883 5.85071 5.92669 6.04111 6.24576 6.27191 6.75014 6.76968 6.83171 6.89369 7.01642 7.05743 7.39482 7.56892 7.71036 7.83208 8.00903 8.04693 8.12836 8.39274 8.59159 8.71364 8.95046 9.86337 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.031236 B = 0.003214 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.194255 B = 8710.707776 C = 9022.033250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.628 5.628 3 C 0.096 3.904 4 C 0.139 3.861 5 H 0.116 0.884 6 N -0.736 5.736 7 C 0.575 3.425 8 O -0.569 6.569 9 C -0.287 4.287 10 C -0.034 4.034 11 C -0.183 4.183 12 C 0.129 3.871 13 C -0.442 4.442 14 H 0.085 0.915 15 C 0.073 3.927 16 N -0.767 5.767 17 Si 0.915 3.085 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.235 4.235 22 C -0.048 4.048 23 C -0.169 4.169 24 C 0.520 3.480 25 O -0.535 6.535 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.398 0.602 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.288 0.712 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.963 3.647 9.733 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.363 5.363 3 C -0.028 4.028 4 C 0.033 3.967 5 H 0.134 0.866 6 N -0.390 5.390 7 C 0.370 3.630 8 O -0.450 6.450 9 C -0.291 4.291 10 C -0.054 4.054 11 C -0.202 4.202 12 C 0.125 3.875 13 C -0.469 4.469 14 H 0.103 0.897 15 C -0.149 4.149 16 N -0.390 5.390 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.254 4.254 22 C -0.067 4.067 23 C -0.210 4.210 24 C 0.308 3.692 25 O -0.411 6.411 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.234 0.766 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.365 2.876 10.223 13.518 hybrid contribution -0.277 0.181 -1.054 1.104 sum -8.641 3.057 9.169 12.965 Atomic orbital electron populations 1.21556 0.78088 1.03744 1.01476 1.48210 1.06516 1.07377 1.74224 1.22455 0.90169 0.87511 1.02646 1.21646 0.96415 0.94870 0.83818 0.86627 1.45960 1.09336 1.77855 1.05810 1.18618 0.81463 0.73933 0.88958 1.90650 1.39001 1.52677 1.62661 1.18853 0.94678 1.25787 0.89800 1.20475 0.94711 0.95171 0.95016 1.21019 0.99399 1.08129 0.91643 1.17794 0.91007 0.85297 0.93359 1.19869 1.00428 1.33760 0.92854 0.89689 1.26119 0.95273 0.92592 1.00886 1.69746 1.09944 1.20610 1.38703 0.86188 0.79712 0.79552 0.80706 1.18879 1.19975 1.18294 1.20665 0.96745 1.14076 0.93962 1.20342 0.95163 0.97174 0.94016 1.22867 0.94183 0.98740 1.05222 1.21005 0.89475 0.84218 0.74469 1.90710 1.78811 1.21161 1.50427 0.89966 0.92126 0.91968 0.89611 0.89455 0.76646 0.88115 0.86127 0.90082 0.88500 0.89434 0.87282 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.14 59.85 0.67 1.44 16 2 N -0.63 -6.60 3.34 -180.20 -0.60 -7.20 16 3 C 0.10 0.81 6.97 -3.06 -0.02 0.79 16 4 C 0.14 1.63 3.47 -66.29 -0.23 1.40 16 5 H 0.12 1.36 7.63 -51.93 -0.40 0.97 16 6 N -0.74 -10.90 5.09 -53.22 -0.27 -11.17 16 7 C 0.57 11.34 7.76 -12.42 -0.10 11.25 16 8 O -0.57 -12.63 16.01 5.29 0.08 -12.54 16 9 C -0.29 -6.29 5.89 -104.73 -0.62 -6.91 16 10 C -0.03 -0.82 9.52 -39.61 -0.38 -1.19 16 11 C -0.18 -4.57 8.63 -39.27 -0.34 -4.91 16 12 C 0.13 3.22 5.57 -106.80 -0.60 2.62 16 13 C -0.44 -10.81 9.04 -37.75 -0.34 -11.15 16 14 H 0.09 1.97 7.91 -52.49 -0.42 1.55 16 15 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 16 N -0.77 -18.54 10.95 55.56 0.61 -17.93 16 17 Si 0.91 17.15 29.60 -169.99 -5.03 12.12 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 21 C -0.24 -5.32 9.73 -39.27 -0.38 -5.70 16 22 C -0.05 -0.99 9.47 -39.61 -0.38 -1.36 16 23 C -0.17 -2.12 6.59 -26.74 -0.18 -2.29 16 24 C 0.52 7.18 8.02 -10.86 -0.09 7.10 16 25 O -0.53 -9.45 17.35 5.56 0.10 -9.36 16 26 H 0.08 0.79 7.53 -51.93 -0.39 0.40 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.40 5.37 6.62 -40.82 -0.27 5.10 16 32 H 0.10 2.36 7.63 -52.48 -0.40 1.96 16 33 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 34 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 35 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.09 1.47 6.37 -52.49 -0.33 1.14 16 37 H 0.11 1.63 8.09 -51.93 -0.42 1.21 16 38 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -30.51 325.55 -7.89 -38.40 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.62 Total: 10.11 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -3.06 Total: -7.32 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.26 Total: -36.31 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.18 Total: -21.90 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.51 -7.89 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270372470.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.997 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds