Wall clock time and date at job start Tue Mar 31 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46847 * 110.99957 * 2 1 4 4 C 1.50138 * 110.27607 * 287.54174 * 3 2 1 5 5 C 1.29824 * 123.28394 * 342.94601 * 4 3 2 6 6 C 1.50699 * 118.55067 * 180.65798 * 5 4 3 7 7 N 1.46501 * 109.47247 * 94.73162 * 6 5 4 8 8 S 1.65607 * 119.99899 * 165.00020 * 7 6 5 9 9 O 1.42096 * 104.27464 * 181.07231 * 8 7 6 10 10 O 1.42107 * 104.27388 * 308.92362 * 8 7 6 11 11 C 1.81395 * 104.45162 * 64.99523 * 8 7 6 12 12 C 1.53002 * 109.47134 * 179.97438 * 11 8 7 13 13 C 1.50700 * 109.47081 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99824 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00044 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00063 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47515 * 59.99454 * 17 15 13 19 19 H 1.48508 * 109.47261 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47196 * 299.99722 * 17 15 13 21 21 C 1.50306 * 122.89234 * 0.37239 * 5 4 3 22 22 C 1.47245 * 111.00146 * 237.07446 * 2 1 3 23 23 H 1.09008 * 109.46949 * 182.92859 * 1 2 3 24 24 H 1.09002 * 109.47556 * 302.92631 * 1 2 3 25 25 H 1.08999 * 109.47399 * 62.93238 * 1 2 3 26 26 H 1.08999 * 109.33341 * 47.78794 * 3 2 1 27 27 H 1.09000 * 109.33955 * 167.45407 * 3 2 1 28 28 H 1.08000 * 118.35721 * 162.96624 * 4 3 2 29 29 H 1.09009 * 109.47121 * 214.73129 * 6 5 4 30 30 H 1.09000 * 109.47246 * 334.72694 * 6 5 4 31 31 H 0.96997 * 120.00035 * 344.99691 * 7 6 5 32 32 H 1.09003 * 109.47597 * 300.00485 * 11 8 7 33 33 H 1.09008 * 109.46925 * 59.99896 * 11 8 7 34 34 H 1.08991 * 109.47371 * 300.00198 * 12 11 8 35 35 H 1.09002 * 109.46592 * 60.00349 * 12 11 8 36 36 H 0.97000 * 120.00228 * 180.02562 * 16 15 13 37 37 H 1.09006 * 109.42717 * 103.57879 * 21 5 4 38 38 H 1.08999 * 109.42986 * 223.47543 * 21 5 4 39 39 H 1.09001 * 109.63105 * 294.88217 * 22 2 1 40 40 H 1.08997 * 109.80426 * 174.37462 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 1.7853 2.0088 -1.3429 5 6 1.5191 1.3329 -2.4189 6 6 1.3432 2.0818 -3.7147 7 7 2.6138 2.1015 -4.4438 8 16 2.6427 2.5197 -6.0459 9 8 4.0104 2.4041 -6.4135 10 8 1.6516 1.6937 -6.6416 11 6 2.1217 4.2571 -6.0697 12 6 2.1086 4.7659 -7.5126 13 6 1.6752 6.2091 -7.5324 14 1 1.4336 6.7130 -6.6083 15 6 1.5870 6.8860 -8.7303 16 7 1.8807 6.2721 -9.8556 17 14 1.0504 8.6750 -8.7548 18 1 1.9997 9.4876 -7.9526 19 1 1.0376 9.1689 -10.1553 20 1 -0.3122 8.7911 -8.1761 21 6 1.3849 -0.1641 -2.4302 22 6 1.9966 -0.7472 -1.1538 23 1 -0.3633 -1.0264 0.0525 24 1 -0.3634 0.5586 0.8626 25 1 -0.3634 0.4676 -0.9151 26 1 1.4793 1.9555 0.7618 27 1 3.0618 1.3482 0.2234 28 1 1.8599 3.0836 -1.4175 29 1 0.5843 1.5864 -4.3205 30 1 1.0294 3.1041 -3.5039 31 1 3.4381 1.8696 -3.9881 32 1 1.1215 4.3424 -5.6449 33 1 2.8186 4.8535 -5.4808 34 1 3.1089 4.6807 -7.9370 35 1 1.4120 4.1695 -8.1018 36 1 1.8190 6.7484 -10.6984 37 1 0.3298 -0.4331 -2.4823 38 1 1.9054 -0.5683 -3.2984 39 1 1.7246 -1.7989 -1.0645 40 1 3.0818 -0.6514 -1.1909 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272060392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:04 Heat of formation + Delta-G solvation = -89.044595 kcal Electronic energy + Delta-G solvation = -20974.624202 eV Core-core repulsion = 17722.247975 eV Total energy + Delta-G solvation = -3252.376227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64796 -38.19278 -37.07746 -36.79358 -35.90553 -33.19734 -33.13131 -31.86879 -28.73973 -27.60291 -26.24949 -24.49992 -23.61573 -22.67068 -20.37848 -19.21086 -18.72463 -18.14998 -17.62397 -17.06917 -16.70538 -16.52562 -16.33125 -15.96377 -15.43080 -15.17133 -15.10167 -14.51876 -14.42646 -13.99027 -13.74604 -13.61737 -13.28014 -13.20037 -13.10487 -13.00638 -12.91262 -12.80445 -12.69322 -12.34211 -12.23906 -12.17841 -12.10720 -11.76078 -11.64591 -11.21204 -10.64830 -10.40631 -9.92094 -9.25334 -8.26809 -6.41196 -0.71189 1.03836 1.40394 1.43842 1.52047 1.97129 2.37474 2.79031 3.06569 3.07308 3.25949 3.69478 3.76184 3.98562 4.08694 4.12048 4.19503 4.33284 4.38054 4.54270 4.58504 4.63532 4.69628 4.75447 4.84538 4.87357 4.94921 4.98924 5.07338 5.12261 5.26171 5.27085 5.49150 5.67236 5.86544 6.04759 6.05907 6.08779 6.16763 6.72493 7.29158 8.85317 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.003395 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.435077 B = 8245.212873 C = 8849.720549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.541 5.541 3 C 0.076 3.924 4 C -0.159 4.159 5 C -0.139 4.139 6 C 0.141 3.859 7 N -1.103 6.103 8 S 2.621 3.379 9 O -1.000 7.000 10 O -0.998 6.998 11 C -0.587 4.587 12 C 0.019 3.981 13 C -0.541 4.541 14 H 0.077 0.923 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.263 1.263 19 H -0.285 1.285 20 H -0.262 1.262 21 C -0.123 4.123 22 C 0.053 3.947 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.423 0.577 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.267 0.733 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -10.154 22.528 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.263 5.263 3 C -0.052 4.052 4 C -0.180 4.180 5 C -0.141 4.141 6 C 0.016 3.984 7 N -0.864 5.864 8 S 2.718 3.282 9 O -0.990 6.990 10 O -0.988 6.988 11 C -0.719 4.719 12 C -0.020 4.020 13 C -0.580 4.580 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.574 5.574 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.162 4.162 22 C -0.075 4.075 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.141 0.859 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.259 0.741 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.875 -10.956 21.989 24.639 hybrid contribution -0.292 1.630 -1.069 1.971 sum -2.167 -9.326 20.920 23.007 Atomic orbital electron populations 1.22488 0.87026 1.02588 1.01132 1.62769 1.08861 1.13632 1.41063 1.21255 1.01941 0.88105 0.93850 1.23112 0.98096 1.01189 0.95620 1.20828 1.03646 0.95746 0.93842 1.20546 0.84718 1.01019 0.92106 1.55342 1.15726 1.85692 1.29659 1.04425 0.72948 0.77766 0.73079 1.93502 1.35796 1.87464 1.82238 1.93497 1.62984 1.65915 1.76402 1.30327 1.13316 1.21622 1.06630 1.18826 0.96597 0.97863 0.88682 1.21501 1.46243 0.96318 0.93926 0.90523 1.26129 0.95117 1.03914 0.95113 1.70095 1.49308 1.39270 0.98745 0.85356 0.79390 0.78140 0.77317 1.18763 1.21029 1.18692 1.21067 1.02460 0.92239 1.00398 1.22283 0.99983 0.98416 0.86812 0.91014 0.90744 0.95112 0.88413 0.88625 0.85886 0.90663 0.89395 0.74077 0.83941 0.83835 0.97570 0.97482 0.92376 0.90216 0.90857 0.89438 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.91 127.69 1.14 1.34 16 2 N -0.54 -7.64 5.29 -927.19 -4.90 -12.55 16 3 C 0.08 0.94 5.94 85.39 0.51 1.45 16 4 C -0.16 -2.27 9.06 26.68 0.24 -2.03 16 5 C -0.14 -2.37 4.65 -15.40 -0.07 -2.44 16 6 C 0.14 2.90 6.18 85.63 0.53 3.43 16 7 N -1.10 -26.47 5.88 -190.78 -1.12 -27.60 16 8 S 2.62 91.93 5.46 -56.49 -0.31 91.62 16 9 O -1.00 -41.68 18.08 -127.65 -2.31 -43.99 16 10 O -1.00 -41.51 17.50 -127.65 -2.23 -43.74 16 11 C -0.59 -21.63 6.01 71.98 0.43 -21.20 16 12 C 0.02 1.00 4.98 29.85 0.15 1.15 16 13 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 14 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 15 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 16 N -0.93 -56.94 13.29 21.44 0.28 -56.65 16 17 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 21 C -0.12 -2.03 5.24 29.75 0.16 -1.87 16 22 C 0.05 0.75 6.06 86.26 0.52 1.28 16 23 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 24 H 0.07 0.81 8.05 -2.39 -0.02 0.79 16 25 H 0.03 0.43 5.68 -2.39 -0.01 0.42 16 26 H 0.10 0.99 7.98 -2.39 -0.02 0.97 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.12 1.55 7.81 -2.91 -0.02 1.53 16 29 H 0.08 1.71 7.68 -2.38 -0.02 1.69 16 30 H 0.09 1.48 7.85 -2.39 -0.02 1.47 16 31 H 0.42 8.66 8.61 -96.74 -0.83 7.83 16 32 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 33 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.08 1.28 6.94 -2.38 -0.02 1.26 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -74.93 337.81 -4.07 -79.00 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.19 Total: 17.13 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 4.30 Total: -48.27 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -5.74 Total: -96.79 kcal Atomic # 8 Polarization: -83.19 SS G_CDS: -4.54 Total: -87.73 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 91.93 SS G_CDS: -0.31 Total: 91.62 kcal Total: -74.93 -4.07 -79.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272060392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.045 kcal (2) G-P(sol) polarization free energy of solvation -74.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds