Wall clock time and date at job start Tue Mar 31 2020 02:34:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.17763 * 2 1
4 4 C 1.52988 * 109.21953 * 240.63589 * 2 1 3
5 5 N 1.47261 * 108.22333 * 286.41657 * 4 2 1
6 6 C 1.34780 * 121.35091 * 118.49923 * 5 4 2
7 7 O 1.21547 * 120.00292 * 354.11233 * 6 5 4
8 8 C 1.47885 * 120.00015 * 174.11517 * 6 5 4
9 9 C 1.39920 * 120.02300 * 334.14008 * 8 6 5
10 10 C 1.38334 * 120.35742 * 179.97438 * 9 8 6
11 11 C 1.37753 * 120.41263 * 0.02562 * 10 9 8
12 12 C 1.40754 * 120.03903 * 359.97438 * 11 10 9
13 13 C 1.41440 * 120.17640 * 180.02562 * 12 11 10
14 14 H 1.07999 * 119.99813 * 149.02413 * 13 12 11
15 15 C 1.39936 * 119.99870 * 329.01711 * 13 12 11
16 16 N 1.30827 * 119.99619 * 167.27643 * 15 13 12
17 17 Si 1.86796 * 120.00304 * 347.27730 * 15 13 12
18 18 H 1.48500 * 109.47321 * 93.03910 * 17 15 13
19 19 H 1.48496 * 109.47114 * 213.03846 * 17 15 13
20 20 H 1.48501 * 109.47047 * 333.03739 * 17 15 13
21 21 C 1.38996 * 120.02514 * 153.86282 * 8 6 5
22 22 C 1.47047 * 117.29500 * 298.47246 * 5 4 2
23 23 C 1.50438 * 108.89264 * 42.73895 * 22 5 4
24 24 O 1.21272 * 118.49242 * 167.29146 * 23 22 5
25 25 N 1.33387 * 123.01795 * 347.31706 * 23 22 5
26 26 H 1.08999 * 109.47251 * 179.35505 * 1 2 3
27 27 H 1.08994 * 109.47621 * 299.36665 * 1 2 3
28 28 H 1.09009 * 109.46972 * 59.36278 * 1 2 3
29 29 H 1.09002 * 109.72039 * 166.71927 * 4 2 1
30 30 H 1.08998 * 109.71918 * 46.11275 * 4 2 1
31 31 H 1.07995 * 119.82532 * 0.02562 * 9 8 6
32 32 H 1.08001 * 119.79272 * 180.02562 * 10 9 8
33 33 H 1.08004 * 119.98256 * 180.02562 * 11 10 9
34 34 H 0.96996 * 120.00093 * 179.97438 * 16 15 13
35 35 H 1.07992 * 120.20200 * 359.97438 * 21 8 6
36 36 H 1.08999 * 109.56982 * 162.56651 * 22 5 4
37 37 H 1.09007 * 109.56621 * 282.91359 * 22 5 4
38 38 H 0.97000 * 117.69882 * 184.29773 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8880 1.0295 0.0000
4 6 2.0336 -0.7084 -1.2590
5 7 1.8119 -2.1548 -1.0935
6 6 1.0077 -2.8411 -1.9294
7 8 0.3647 -2.2510 -2.7753
8 6 0.9075 -4.3123 -1.8172
9 6 1.9685 -5.0471 -1.2769
10 6 1.8820 -6.4235 -1.1683
11 6 0.7510 -7.0866 -1.5911
12 6 -0.3265 -6.3643 -2.1373
13 6 -1.4894 -7.0421 -2.5718
14 1 -2.4515 -6.5547 -2.5152
15 6 -1.3932 -8.3443 -3.0752
16 7 -2.4740 -9.0621 -3.2431
17 14 0.2782 -9.0576 -3.5074
18 1 0.8145 -9.8040 -2.3410
19 1 0.1391 -9.9792 -4.6634
20 1 1.2097 -7.9566 -3.8614
21 6 -0.2431 -4.9655 -2.2432
22 6 2.5041 -2.8199 0.0204
23 6 2.4109 -1.9474 1.2424
24 8 2.7144 -2.4217 2.3164
25 7 2.0092 -0.6762 1.1989
26 1 -0.3634 -1.0276 -0.0116
27 1 -0.3634 0.5039 0.8955
28 1 -0.3633 0.5237 -0.8843
29 1 3.0977 -0.5120 -1.3908
30 1 1.4830 -0.3490 -2.1283
31 1 2.8596 -4.5370 -0.9420
32 1 2.7063 -6.9816 -0.7494
33 1 0.6907 -8.1613 -1.5026
34 1 -2.4075 -9.9645 -3.5923
35 1 -1.0664 -4.4019 -2.6564
36 1 2.0319 -3.7815 0.2216
37 1 3.5515 -2.9730 -0.2399
38 1 2.0387 -0.1656 2.0231
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000296314387.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:34:58
Heat of formation + Delta-G solvation = -30.733807 kcal
Electronic energy + Delta-G solvation = -22867.187094 eV
Core-core repulsion = 19481.895461 eV
Total energy + Delta-G solvation = -3385.291632 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 288.126 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.89985 -39.13110 -37.59086 -36.64157 -34.71460 -33.63196 -31.48767 -30.62514
-30.11556 -28.00557 -26.82033 -25.30550 -23.16048 -22.51984 -20.85466 -20.15154
-19.08469 -18.02406 -17.25301 -16.85935 -16.21113 -15.99109 -15.59984 -15.13801
-14.93164 -14.52878 -14.25222 -13.83455 -13.76930 -13.23516 -12.99119 -12.80813
-12.66556 -12.37896 -12.14453 -12.09733 -11.73941 -11.56211 -11.36151 -11.16155
-10.82336 -10.59574 -10.34254 -9.98473 -9.76233 -9.56049 -9.35576 -9.15632
-8.69092 -7.94323 -7.79865 -7.02462 -4.61527 1.82547 2.39759 2.50420
2.78966 3.02659 3.12210 3.16783 3.22727 3.40386 3.89519 4.32077
4.35499 4.40801 4.72647 4.81576 5.00375 5.15522 5.26770 5.39901
5.44348 5.52891 5.58253 5.63486 5.81550 5.94963 6.07289 6.21590
6.32619 6.57096 6.58341 6.63289 6.91107 7.11517 7.12036 7.25774
7.40462 7.43188 7.68059 7.86450 8.03180 8.22249 8.41315 8.45939
8.65712 9.99635
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.026440 B = 0.004512 C = 0.004207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1058.727881 B = 6204.071809 C = 6654.582643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.124 3.876
3 H 0.095 0.905
4 C 0.101 3.899
5 N -0.619 5.619
6 C 0.574 3.426
7 O -0.536 6.536
8 C -0.109 4.109
9 C -0.235 4.235
10 C -0.079 4.079
11 C -0.221 4.221
12 C 0.083 3.917
13 C -0.439 4.439
14 H 0.094 0.906
15 C 0.081 3.919
16 N -0.806 5.806
17 Si 0.914 3.086
18 H -0.269 1.269
19 H -0.291 1.291
20 H -0.242 1.242
21 C -0.136 4.136
22 C 0.083 3.917
23 C 0.513 3.487
24 O -0.549 6.549
25 N -0.715 5.715
26 H 0.062 0.938
27 H 0.058 0.942
28 H 0.072 0.928
29 H 0.077 0.923
30 H 0.112 0.888
31 H 0.113 0.887
32 H 0.102 0.898
33 H 0.104 0.896
34 H 0.287 0.713
35 H 0.113 0.887
36 H 0.150 0.850
37 H 0.103 0.897
38 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.415 13.673 4.420 17.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.018 3.982
3 H 0.113 0.887
4 C -0.023 4.023
5 N -0.355 5.355
6 C 0.367 3.633
7 O -0.413 6.413
8 C -0.112 4.112
9 C -0.254 4.254
10 C -0.098 4.098
11 C -0.240 4.240
12 C 0.080 3.920
13 C -0.467 4.467
14 H 0.112 0.888
15 C -0.138 4.138
16 N -0.430 5.430
17 Si 0.741 3.259
18 H -0.196 1.196
19 H -0.218 1.218
20 H -0.165 1.165
21 C -0.156 4.156
22 C -0.042 4.042
23 C 0.299 3.701
24 O -0.426 6.426
25 N -0.367 5.367
26 H 0.082 0.918
27 H 0.077 0.923
28 H 0.091 0.909
29 H 0.095 0.905
30 H 0.130 0.870
31 H 0.130 0.870
32 H 0.120 0.880
33 H 0.122 0.878
34 H 0.098 0.902
35 H 0.131 0.869
36 H 0.168 0.832
37 H 0.120 0.880
38 H 0.232 0.768
Dipole moment (debyes) X Y Z Total
from point charges 9.004 13.371 4.198 16.658
hybrid contribution 0.616 -0.215 0.124 0.664
sum 9.620 13.157 4.322 16.862
Atomic orbital electron populations
1.22239 0.94341 1.03451 1.02361 1.21374 0.95355 0.96472 0.85013
0.88686 1.21941 1.01621 0.80611 0.98087 1.48004 1.48511 1.08320
1.30675 1.18859 0.76886 0.88026 0.79554 1.90711 1.43853 1.70860
1.35905 1.19342 0.97452 0.89939 1.04478 1.20883 0.99203 0.94307
1.11006 1.20550 0.96796 0.93843 0.98583 1.21209 0.96746 0.98795
1.07279 1.17712 0.92535 0.91512 0.90231 1.19542 0.94890 0.97419
1.34884 0.88827 1.26171 0.98973 0.95906 0.92740 1.69645 1.30871
1.09829 1.32688 0.86283 0.82312 0.79471 0.77859 1.19551 1.21815
1.16544 1.21197 0.96822 0.94316 1.03249 1.22716 1.00105 0.98439
0.82923 1.20611 0.75953 0.82266 0.91282 1.90785 1.50064 1.71958
1.29809 1.45556 1.66007 1.12337 1.12799 0.91846 0.92285 0.90946
0.90524 0.86971 0.86982 0.87995 0.87810 0.90235 0.86862 0.83241
0.87952 0.76821
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.64 9.38 37.16 0.35 -1.29 16
2 C 0.12 1.06 3.88 -68.35 -0.26 0.80 16
3 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16
4 C 0.10 1.04 5.88 -3.63 -0.02 1.02 16
5 N -0.62 -8.60 2.73 -175.25 -0.48 -9.08 16
6 C 0.57 10.47 7.51 -12.31 -0.09 10.38 16
7 O -0.54 -11.01 16.12 5.32 0.09 -10.92 16
8 C -0.11 -2.22 5.51 -105.04 -0.58 -2.80 16
9 C -0.23 -4.35 7.53 -38.92 -0.29 -4.64 16
10 C -0.08 -1.57 10.01 -39.72 -0.40 -1.97 16
11 C -0.22 -5.02 6.99 -38.81 -0.27 -5.29 16
12 C 0.08 2.04 5.13 -106.87 -0.55 1.49 16
13 C -0.44 -11.58 9.60 -37.73 -0.36 -11.94 16
14 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16
15 C 0.08 2.07 5.46 -17.34 -0.09 1.98 16
16 N -0.81 -21.06 13.93 55.55 0.77 -20.28 16
17 Si 0.91 20.17 24.40 -169.99 -4.15 16.02 16
18 H -0.27 -5.70 6.68 56.52 0.38 -5.32 16
19 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16
20 H -0.24 -5.46 6.67 56.52 0.38 -5.08 16
21 C -0.14 -3.14 9.33 -38.44 -0.36 -3.49 16
22 C 0.08 1.09 4.67 -5.02 -0.02 1.07 16
23 C 0.51 6.84 7.84 -11.73 -0.09 6.74 16
24 O -0.55 -9.21 17.80 5.56 0.10 -9.11 16
25 N -0.71 -7.25 5.00 -54.72 -0.27 -7.53 16
26 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16
27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16
29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
30 H 0.11 1.23 7.01 -51.93 -0.36 0.87 16
31 H 0.11 1.71 4.82 -52.49 -0.25 1.45 16
32 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16
33 H 0.10 2.35 4.42 -52.48 -0.23 2.12 16
34 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16
35 H 0.11 2.65 7.86 -52.49 -0.41 2.24 16
36 H 0.15 2.25 4.83 -51.93 -0.25 1.99 16
37 H 0.10 1.12 7.57 -51.92 -0.39 0.72 16
38 H 0.40 3.44 8.80 -40.82 -0.36 3.08 16
LS Contribution 309.40 15.07 4.66 4.66
Total: -1.00 -30.28 309.40 -6.73 -37.00
By element:
Atomic # 1 Polarization: 11.59 SS G_CDS: -4.40 Total: 7.19 kcal
Atomic # 6 Polarization: -4.90 SS G_CDS: -3.05 Total: -7.95 kcal
Atomic # 7 Polarization: -36.91 SS G_CDS: 0.02 Total: -36.89 kcal
Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal
Atomic # 14 Polarization: 20.17 SS G_CDS: -4.15 Total: 16.02 kcal
Total LS contribution 4.66 Total: 4.66 kcal
Total: -30.28 -6.73 -37.00 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000296314387.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.270 kcal
(2) G-P(sol) polarization free energy of solvation -30.276 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.007 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.734 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds