Wall clock time and date at job start Tue Mar 31 2020 02:34:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.17763 * 2 1
4 4 C 1.52988 * 109.21953 * 240.63589 * 2 1 3
5 5 N 1.47261 * 108.22333 * 286.41657 * 4 2 1
6 6 C 1.34780 * 121.35091 * 118.49923 * 5 4 2
7 7 O 1.21547 * 120.00292 * 354.11233 * 6 5 4
8 8 C 1.47885 * 120.00015 * 174.11517 * 6 5 4
9 9 C 1.39920 * 120.02300 * 334.14008 * 8 6 5
10 10 C 1.38334 * 120.35742 * 179.97438 * 9 8 6
11 11 C 1.37753 * 120.41263 * 0.02562 * 10 9 8
12 12 C 1.40754 * 120.03903 * 359.97438 * 11 10 9
13 13 C 1.41440 * 120.17640 * 180.02562 * 12 11 10
14 14 H 1.07999 * 119.99813 * 149.02413 * 13 12 11
15 15 C 1.39936 * 119.99870 * 329.01711 * 13 12 11
16 16 N 1.30827 * 119.99619 * 167.27643 * 15 13 12
17 17 Si 1.86796 * 120.00304 * 347.27730 * 15 13 12
18 18 H 1.48500 * 109.47321 * 93.03910 * 17 15 13
19 19 H 1.48496 * 109.47114 * 213.03846 * 17 15 13
20 20 H 1.48501 * 109.47047 * 333.03739 * 17 15 13
21 21 C 1.38996 * 120.02514 * 153.86282 * 8 6 5
22 22 C 1.47047 * 117.29500 * 298.47246 * 5 4 2
23 23 C 1.50438 * 108.89264 * 42.73895 * 22 5 4
24 24 O 1.21272 * 118.49242 * 167.29146 * 23 22 5
25 25 N 1.33387 * 123.01795 * 347.31706 * 23 22 5
26 26 H 1.08999 * 109.47251 * 179.35505 * 1 2 3
27 27 H 1.08994 * 109.47621 * 299.36665 * 1 2 3
28 28 H 1.09009 * 109.46972 * 59.36278 * 1 2 3
29 29 H 1.09002 * 109.72039 * 166.71927 * 4 2 1
30 30 H 1.08998 * 109.71918 * 46.11275 * 4 2 1
31 31 H 1.07995 * 119.82532 * 0.02562 * 9 8 6
32 32 H 1.08001 * 119.79272 * 180.02562 * 10 9 8
33 33 H 1.08004 * 119.98256 * 180.02562 * 11 10 9
34 34 H 0.96996 * 120.00093 * 179.97438 * 16 15 13
35 35 H 1.07992 * 120.20200 * 359.97438 * 21 8 6
36 36 H 1.08999 * 109.56982 * 162.56651 * 22 5 4
37 37 H 1.09007 * 109.56621 * 282.91359 * 22 5 4
38 38 H 0.97000 * 117.69882 * 184.29773 * 25 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8880 1.0295 0.0000
4 6 2.0336 -0.7084 -1.2590
5 7 1.8119 -2.1548 -1.0935
6 6 1.0077 -2.8411 -1.9294
7 8 0.3647 -2.2510 -2.7753
8 6 0.9075 -4.3123 -1.8172
9 6 1.9685 -5.0471 -1.2769
10 6 1.8820 -6.4235 -1.1683
11 6 0.7510 -7.0866 -1.5911
12 6 -0.3265 -6.3643 -2.1373
13 6 -1.4894 -7.0421 -2.5718
14 1 -2.4515 -6.5547 -2.5152
15 6 -1.3932 -8.3443 -3.0752
16 7 -2.4740 -9.0621 -3.2431
17 14 0.2782 -9.0576 -3.5074
18 1 0.8145 -9.8040 -2.3410
19 1 0.1391 -9.9792 -4.6634
20 1 1.2097 -7.9566 -3.8614
21 6 -0.2431 -4.9655 -2.2432
22 6 2.5041 -2.8199 0.0204
23 6 2.4109 -1.9474 1.2424
24 8 2.7144 -2.4217 2.3164
25 7 2.0092 -0.6762 1.1989
26 1 -0.3634 -1.0276 -0.0116
27 1 -0.3634 0.5039 0.8955
28 1 -0.3633 0.5237 -0.8843
29 1 3.0977 -0.5120 -1.3908
30 1 1.4830 -0.3490 -2.1283
31 1 2.8596 -4.5370 -0.9420
32 1 2.7063 -6.9816 -0.7494
33 1 0.6907 -8.1613 -1.5026
34 1 -2.4075 -9.9645 -3.5923
35 1 -1.0664 -4.4019 -2.6564
36 1 2.0319 -3.7815 0.2216
37 1 3.5515 -2.9730 -0.2399
38 1 2.0387 -0.1656 2.0231
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000296314387.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:34:57
Heat of formation + Delta-G solvation = -52.780215 kcal
Electronic energy + Delta-G solvation = -22868.143098 eV
Core-core repulsion = 19481.895461 eV
Total energy + Delta-G solvation = -3386.247636 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 288.126 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.04112 -40.46176 -39.16490 -37.79136 -36.02167 -35.32022 -32.74879 -32.06266
-31.73774 -29.06043 -27.99384 -27.01820 -24.46665 -23.69905 -22.52612 -21.55217
-20.12271 -19.56276 -18.32280 -18.25085 -17.57674 -17.44097 -16.87034 -16.50911
-16.29333 -15.84325 -15.45120 -15.33773 -14.98990 -14.60715 -14.53910 -14.33347
-13.91415 -13.81261 -13.48116 -13.07333 -13.01220 -12.89804 -12.70754 -12.48885
-12.37368 -12.27708 -11.70604 -11.69438 -11.41065 -11.21579 -10.74287 -10.25060
-9.87090 -9.61710 -9.54275 -8.90412 -6.57981 0.17071 0.70436 1.25013
1.39734 1.44452 1.47863 1.66951 1.82768 2.10649 2.24257 2.60965
3.36402 3.37095 3.45619 3.67535 3.97977 4.13937 4.22756 4.25421
4.35903 4.40505 4.48435 4.63884 4.70364 4.79268 4.82587 4.85465
4.87503 5.09940 5.22870 5.28655 5.40412 5.57063 5.67231 5.78016
5.82037 5.98780 6.17145 6.19774 6.28847 6.61824 6.72652 7.01657
7.08538 8.18503
Molecular weight = 288.13amu
Principal moments of inertia in cm(-1)
A = 0.026440 B = 0.004512 C = 0.004207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1058.727881 B = 6204.071809 C = 6654.582643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.129 3.871
3 H 0.145 0.855
4 C 0.092 3.908
5 N -0.607 5.607
6 C 0.574 3.426
7 O -0.567 6.567
8 C -0.115 4.115
9 C -0.199 4.199
10 C -0.082 4.082
11 C -0.225 4.225
12 C 0.066 3.934
13 C -0.485 4.485
14 H 0.051 0.949
15 C 0.042 3.958
16 N -0.854 5.854
17 Si 0.970 3.030
18 H -0.248 1.248
19 H -0.281 1.281
20 H -0.248 1.248
21 C -0.163 4.163
22 C 0.079 3.921
23 C 0.514 3.486
24 O -0.587 6.587
25 N -0.702 5.702
26 H 0.021 0.979
27 H 0.073 0.927
28 H 0.077 0.923
29 H 0.113 0.887
30 H 0.105 0.895
31 H 0.159 0.841
32 H 0.148 0.852
33 H 0.106 0.894
34 H 0.295 0.705
35 H 0.090 0.910
36 H 0.131 0.869
37 H 0.139 0.861
38 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.942 15.630 5.638 21.690
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.024 3.976
3 H 0.162 0.838
4 C -0.029 4.029
5 N -0.341 5.341
6 C 0.365 3.635
7 O -0.447 6.447
8 C -0.118 4.118
9 C -0.218 4.218
10 C -0.099 4.099
11 C -0.245 4.245
12 C 0.064 3.936
13 C -0.515 4.515
14 H 0.069 0.931
15 C -0.171 4.171
16 N -0.481 5.481
17 Si 0.793 3.207
18 H -0.173 1.173
19 H -0.207 1.207
20 H -0.172 1.172
21 C -0.183 4.183
22 C -0.045 4.045
23 C 0.300 3.700
24 O -0.468 6.468
25 N -0.353 5.353
26 H 0.040 0.960
27 H 0.092 0.908
28 H 0.096 0.904
29 H 0.131 0.869
30 H 0.124 0.876
31 H 0.176 0.824
32 H 0.165 0.835
33 H 0.124 0.876
34 H 0.105 0.895
35 H 0.109 0.891
36 H 0.149 0.851
37 H 0.157 0.843
38 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges 13.541 15.388 5.445 21.208
hybrid contribution -0.675 -0.504 -0.112 0.850
sum 12.866 14.884 5.332 20.384
Atomic orbital electron populations
1.22246 0.95644 1.01009 1.03484 1.21552 0.94146 0.98424 0.83438
0.83756 1.22337 1.03871 0.77953 0.98763 1.47928 1.46807 1.09942
1.29421 1.18500 0.77595 0.87245 0.80186 1.90701 1.45275 1.71098
1.37651 1.19670 0.96745 0.91913 1.03465 1.21503 0.99449 0.94120
1.06695 1.21073 0.96866 0.94541 0.97464 1.21407 0.97033 0.99142
1.06879 1.17790 0.92818 0.92149 0.90871 1.19479 0.94231 0.98829
1.38924 0.93108 1.26895 1.02362 0.95724 0.92139 1.69688 1.32653
1.10691 1.35066 0.85448 0.78005 0.78725 0.78559 1.17308 1.20741
1.17204 1.21136 0.97857 0.94158 1.05184 1.22778 1.01590 0.97573
0.82572 1.20535 0.75846 0.83036 0.90537 1.90784 1.52189 1.72902
1.30895 1.45497 1.64350 1.11493 1.13930 0.95973 0.90775 0.90381
0.86908 0.87623 0.82372 0.83475 0.87607 0.89498 0.89150 0.85148
0.84336 0.75567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.90 9.38 71.98 0.67 -2.23 16
2 C 0.13 1.65 3.88 45.13 0.17 1.82 16
3 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16
4 C 0.09 1.52 5.88 86.23 0.51 2.02 16
5 N -0.61 -14.92 2.73 -826.66 -2.26 -17.17 16
6 C 0.57 20.23 7.51 86.80 0.65 20.88 16
7 O -0.57 -23.41 16.12 -3.86 -0.06 -23.47 16
8 C -0.11 -4.58 5.51 -20.13 -0.11 -4.69 16
9 C -0.20 -6.64 7.53 22.70 0.17 -6.47 16
10 C -0.08 -2.92 10.01 22.18 0.22 -2.70 16
11 C -0.23 -10.02 6.99 22.77 0.16 -9.86 16
12 C 0.07 3.38 5.13 -21.32 -0.11 3.27 16
13 C -0.48 -27.74 9.60 23.47 0.23 -27.51 16
14 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16
15 C 0.04 2.29 5.46 85.25 0.47 2.76 16
16 N -0.85 -47.45 13.93 21.82 0.30 -47.15 16
17 Si 0.97 41.90 24.40 68.60 1.67 43.58 16
18 H -0.25 -9.78 6.68 99.48 0.66 -9.12 16
19 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16
20 H -0.25 -10.83 6.67 99.48 0.66 -10.17 16
21 C -0.16 -7.90 9.33 23.01 0.21 -7.68 16
22 C 0.08 1.75 4.67 85.45 0.40 2.14 16
23 C 0.51 11.88 7.84 87.79 0.69 12.57 16
24 O -0.59 -18.09 17.80 -3.01 -0.05 -18.15 16
25 N -0.70 -11.40 5.00 -446.22 -2.23 -13.63 16
26 H 0.02 0.56 7.97 -2.39 -0.02 0.54 16
27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
28 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16
29 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16
30 H 0.11 1.99 7.01 -2.39 -0.02 1.97 16
31 H 0.16 3.86 4.82 -2.91 -0.01 3.85 16
32 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16
33 H 0.11 4.64 4.42 -2.91 -0.01 4.62 16
34 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16
35 H 0.09 4.66 7.86 -2.91 -0.02 4.63 16
36 H 0.13 3.42 4.83 -2.39 -0.01 3.41 16
37 H 0.14 2.13 7.57 -2.38 -0.02 2.12 16
38 H 0.41 5.40 8.80 -92.71 -0.82 4.59 16
Total: -1.00 -72.83 309.40 1.92 -70.91
By element:
Atomic # 1 Polarization: 20.53 SS G_CDS: 0.21 Total: 20.74 kcal
Atomic # 6 Polarization: -20.00 SS G_CDS: 4.33 Total: -15.67 kcal
Atomic # 7 Polarization: -73.77 SS G_CDS: -4.19 Total: -77.95 kcal
Atomic # 8 Polarization: -41.50 SS G_CDS: -0.12 Total: -41.61 kcal
Atomic # 14 Polarization: 41.90 SS G_CDS: 1.67 Total: 43.58 kcal
Total: -72.83 1.92 -70.91 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000296314387.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.130 kcal
(2) G-P(sol) polarization free energy of solvation -72.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.697 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.911 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.780 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds