Wall clock time and date at job start Tue Mar 31 2020 03:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39820 * 125.32542 * 2 1 4 4 C 1.30229 * 110.17066 * 180.18175 * 3 2 1 5 5 C 1.45885 * 107.56341 * 359.58349 * 4 3 2 6 6 C 1.36210 * 125.32445 * 179.70811 * 2 1 3 7 7 N 1.33006 * 133.74991 * 0.02562 * 6 2 1 8 8 C 1.33505 * 121.05793 * 179.97438 * 7 6 2 9 9 N 1.31773 * 119.24264 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99711 * 354.79718 * 9 8 7 11 11 C 1.53000 * 109.46833 * 114.78643 * 10 9 8 12 12 C 1.50698 * 115.54853 * 160.14056 * 11 10 9 13 13 H 1.08000 * 120.00580 * 144.09721 * 12 11 10 14 14 C 1.37881 * 120.00287 * 324.09376 * 12 11 10 15 15 N 1.31513 * 119.99905 * 338.90455 * 14 12 11 16 16 Si 1.86802 * 120.00294 * 158.90080 * 14 12 11 17 17 H 1.48498 * 109.46969 * 60.00218 * 16 14 12 18 18 H 1.48494 * 109.47437 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46847 * 300.00335 * 16 14 12 20 20 C 1.53001 * 117.50009 * 14.43730 * 11 10 9 21 21 C 1.52996 * 117.50098 * 305.81438 * 11 10 9 22 22 N 1.37814 * 121.51384 * 0.02562 * 8 7 6 23 23 H 0.97003 * 120.01224 * 179.97438 * 22 8 7 24 24 C 1.36455 * 119.96740 * 0.02562 * 22 8 7 25 25 N 1.36445 * 120.76618 * 180.02562 * 24 22 8 26 26 H 1.08998 * 109.47281 * 270.29120 * 1 2 3 27 27 H 1.08998 * 109.46500 * 30.29233 * 1 2 3 28 28 H 1.09001 * 109.47087 * 150.28527 * 1 2 3 29 29 H 1.07994 * 126.21718 * 179.84188 * 4 3 2 30 30 H 1.09007 * 109.47184 * 234.78492 * 10 9 8 31 31 H 1.08995 * 109.47339 * 354.78550 * 10 9 8 32 32 H 0.96996 * 120.00192 * 185.02426 * 15 14 12 33 33 H 1.09001 * 117.49714 * 359.97438 * 20 11 10 34 34 H 1.08997 * 117.49969 * 145.02219 * 20 11 10 35 35 H 1.09005 * 117.49570 * 214.98479 * 21 11 10 36 36 H 1.09003 * 117.49638 * 359.96812 * 21 11 10 37 37 H 0.97005 * 120.00380 * 179.97438 * 25 24 22 38 38 H 0.97002 * 120.00379 * 359.97032 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2735 1.1408 0.0000 4 6 3.5305 0.8003 -0.0039 5 6 3.5919 -0.6572 0.0034 6 6 2.2526 -1.1113 0.0057 7 7 2.0005 -2.4172 0.0119 8 6 2.9929 -3.3103 0.0161 9 7 2.7023 -4.5955 0.0227 10 6 1.3084 -5.0307 0.1405 11 6 0.8851 -5.7400 -1.1474 12 6 -0.3194 -6.6378 -1.0291 13 1 -1.0210 -6.7109 -1.8469 14 6 -0.5260 -7.3661 0.1233 15 7 0.4805 -7.6172 0.9318 16 14 -2.2353 -7.9963 0.5364 17 1 -2.7058 -8.8970 -0.5464 18 1 -2.1908 -8.7440 1.8186 19 1 -3.1682 -6.8481 0.6656 20 6 1.9905 -6.1642 -2.1164 21 6 1.0780 -4.9867 -2.4650 22 7 4.3143 -2.9188 0.0146 23 1 5.0181 -3.5863 0.0181 24 6 4.6320 -1.5918 0.0094 25 7 5.9347 -1.1860 0.0073 26 1 -0.3634 0.0052 1.0276 27 1 -0.3632 0.8874 -0.5184 28 1 -0.3633 -0.8925 -0.5094 29 1 4.3742 1.4745 -0.0072 30 1 1.2118 -5.7170 0.9819 31 1 0.6695 -4.1630 0.3043 32 1 0.3513 -8.1901 1.7037 33 1 3.0193 -5.9376 -1.8366 34 1 1.8467 -7.0930 -2.6685 35 1 0.3337 -5.1407 -3.2464 36 1 1.5060 -3.9855 -2.4143 37 1 6.1480 -0.2397 0.0032 38 1 6.6477 -1.8438 0.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330120040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:36 Heat of formation + Delta-G solvation = 183.046192 kcal Electronic energy + Delta-G solvation = -22719.281291 eV Core-core repulsion = 19407.845358 eV Total energy + Delta-G solvation = -3311.435934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39686 -39.06098 -36.93505 -35.79781 -32.96572 -32.64108 -32.28378 -31.90403 -28.43702 -26.70479 -25.91476 -24.88521 -23.70748 -21.60731 -20.80668 -20.41896 -18.83777 -18.53172 -18.41846 -17.44002 -16.55513 -15.93679 -15.65095 -15.21749 -14.51649 -14.39815 -14.16604 -14.00651 -13.65484 -13.44551 -12.64579 -12.38408 -12.30049 -12.22880 -11.39951 -11.26149 -10.89942 -10.78575 -10.61376 -10.42444 -10.22116 -9.93745 -9.34438 -9.20590 -9.06637 -8.82771 -8.67348 -8.37381 -8.32260 -7.48872 -6.47759 -5.88537 -3.84953 0.94986 2.13335 2.20701 2.60119 2.68898 3.30036 3.39224 3.44490 3.49220 4.35085 4.38753 4.50937 4.63457 4.94360 5.01128 5.17328 5.46224 5.54327 5.70388 5.81250 5.85189 5.88480 5.96378 6.37561 6.49650 6.55321 6.81330 6.94008 7.01753 7.03637 7.17369 7.28336 7.35234 7.59986 7.69055 7.75310 7.82087 7.91025 8.28719 8.68403 8.83581 9.07794 9.17621 9.67931 11.12272 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.004707 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.015129 B = 5947.067226 C = 6661.425106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.417 5.417 3 N -0.267 5.267 4 C 0.125 3.875 5 C -0.417 4.417 6 C 0.443 3.557 7 N -0.596 5.596 8 C 0.513 3.487 9 N -0.568 5.568 10 C 0.105 3.895 11 C 0.066 3.934 12 C -0.494 4.494 13 H 0.059 0.941 14 C 0.073 3.927 15 N -0.865 5.865 16 Si 0.884 3.116 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.191 4.191 21 C -0.212 4.212 22 N -0.621 5.621 23 H 0.419 0.581 24 C 0.575 3.425 25 N -0.827 5.827 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.188 0.812 30 H 0.119 0.881 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.425 0.575 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.881 17.797 0.374 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.214 5.214 3 N -0.077 5.077 4 C -0.079 4.079 5 C -0.440 4.440 6 C 0.181 3.819 7 N -0.337 5.337 8 C 0.146 3.854 9 N -0.298 5.298 10 C -0.024 4.024 11 C 0.065 3.935 12 C -0.531 4.531 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.502 5.502 16 Si 0.712 3.288 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.229 4.229 21 C -0.250 4.250 22 N -0.246 5.246 23 H 0.257 0.743 24 C 0.336 3.664 25 N -0.369 5.369 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.205 0.795 30 H 0.136 0.864 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.259 0.741 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 11.315 17.160 0.567 20.563 hybrid contribution 0.648 -0.330 0.092 0.733 sum 11.963 16.831 0.659 20.659 Atomic orbital electron populations 1.21661 0.73818 1.03972 1.02628 1.47490 1.05638 0.99681 1.68629 1.76513 1.02085 1.08601 1.20463 1.24424 0.94928 0.91233 0.97266 1.19080 0.92477 0.93858 1.38553 1.19028 0.86913 0.88539 0.87437 1.68953 1.29827 0.97421 1.37522 1.19818 0.76547 0.91868 0.97199 1.72772 1.25498 1.06418 1.25141 1.21553 0.83031 0.97394 1.00383 1.18968 0.93944 0.94912 0.85690 1.20496 1.06728 1.25266 1.00628 0.92275 1.24974 0.96383 0.95473 0.96203 1.69953 1.29546 1.34797 1.15889 0.86781 0.85690 0.78732 0.77616 1.20336 1.21322 1.20050 1.22806 0.96121 0.95948 1.08020 1.22768 1.04081 0.94849 1.03274 1.42592 1.10700 1.03764 1.67587 0.74259 1.17148 0.84704 0.83584 0.80984 1.42022 1.03239 1.12730 1.78944 0.91923 0.90298 0.89128 0.79540 0.86395 0.94266 0.92897 0.90846 0.91764 0.91750 0.92094 0.74146 0.75914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.60 11.43 59.85 0.68 2.28 16 2 N -0.42 -6.50 4.02 -67.16 -0.27 -6.77 16 3 N -0.27 -3.60 12.39 31.85 0.39 -3.21 16 4 C 0.13 1.28 12.08 -15.17 -0.18 1.10 16 5 C -0.42 -5.35 6.27 -105.03 -0.66 -6.01 16 6 C 0.44 7.67 7.98 -156.28 -1.25 6.43 16 7 N -0.60 -12.30 8.74 -13.32 -0.12 -12.42 16 8 C 0.51 10.26 8.40 -323.27 -2.71 7.55 16 9 N -0.57 -13.49 8.89 -62.41 -0.55 -14.05 16 10 C 0.11 2.87 6.17 -4.04 -0.02 2.84 16 11 C 0.07 1.85 2.32 -155.66 -0.36 1.49 16 12 C -0.49 -14.66 8.98 -34.44 -0.31 -14.96 16 13 H 0.06 1.74 7.90 -52.49 -0.41 1.33 16 14 C 0.07 2.11 5.05 -17.82 -0.09 2.02 16 15 N -0.87 -25.69 11.09 55.43 0.61 -25.07 16 16 Si 0.88 21.87 29.59 -169.99 -5.03 16.84 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.19 -5.05 9.57 -26.73 -0.26 -5.30 16 21 C -0.21 -5.46 9.78 -26.73 -0.26 -5.72 16 22 N -0.62 -8.44 5.43 -12.89 -0.07 -8.51 16 23 H 0.42 4.62 8.91 -40.82 -0.36 4.26 16 24 C 0.57 5.85 7.89 -153.59 -1.21 4.64 16 25 N -0.83 -3.17 8.95 31.51 0.28 -2.89 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.12 3.54 5.40 -51.92 -0.28 3.26 16 31 H 0.04 1.09 6.69 -51.93 -0.35 0.74 16 32 H 0.26 7.33 8.32 -40.82 -0.34 6.99 16 33 H 0.07 1.89 7.04 -51.93 -0.37 1.53 16 34 H 0.06 1.71 8.14 -51.93 -0.42 1.28 16 35 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.43 0.52 8.64 -40.82 -0.35 0.16 16 38 H 0.41 0.62 8.93 -40.82 -0.36 0.26 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -38.83 325.07 -11.07 -49.90 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.58 Total: 4.91 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -6.63 Total: -3.65 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: 0.28 Total: -72.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -38.83 -11.07 -49.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330120040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.946 kcal (2) G-P(sol) polarization free energy of solvation -38.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds