Wall clock time and date at job start Tue Mar 31 2020 03:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39820 * 125.32542 * 2 1 4 4 C 1.30229 * 110.17066 * 180.18175 * 3 2 1 5 5 C 1.45885 * 107.56341 * 359.58349 * 4 3 2 6 6 C 1.36210 * 125.32445 * 179.70811 * 2 1 3 7 7 N 1.33006 * 133.74991 * 0.02562 * 6 2 1 8 8 C 1.33505 * 121.05793 * 179.97438 * 7 6 2 9 9 N 1.31773 * 119.24264 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99711 * 354.79718 * 9 8 7 11 11 C 1.53000 * 109.46833 * 114.78643 * 10 9 8 12 12 C 1.50698 * 115.54853 * 160.14056 * 11 10 9 13 13 H 1.08000 * 120.00580 * 144.09721 * 12 11 10 14 14 C 1.37881 * 120.00287 * 324.09376 * 12 11 10 15 15 N 1.31513 * 119.99905 * 338.90455 * 14 12 11 16 16 Si 1.86802 * 120.00294 * 158.90080 * 14 12 11 17 17 H 1.48498 * 109.46969 * 60.00218 * 16 14 12 18 18 H 1.48494 * 109.47437 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46847 * 300.00335 * 16 14 12 20 20 C 1.53001 * 117.50009 * 14.43730 * 11 10 9 21 21 C 1.52996 * 117.50098 * 305.81438 * 11 10 9 22 22 N 1.37814 * 121.51384 * 0.02562 * 8 7 6 23 23 H 0.97003 * 120.01224 * 179.97438 * 22 8 7 24 24 C 1.36455 * 119.96740 * 0.02562 * 22 8 7 25 25 N 1.36445 * 120.76618 * 180.02562 * 24 22 8 26 26 H 1.08998 * 109.47281 * 270.29120 * 1 2 3 27 27 H 1.08998 * 109.46500 * 30.29233 * 1 2 3 28 28 H 1.09001 * 109.47087 * 150.28527 * 1 2 3 29 29 H 1.07994 * 126.21718 * 179.84188 * 4 3 2 30 30 H 1.09007 * 109.47184 * 234.78492 * 10 9 8 31 31 H 1.08995 * 109.47339 * 354.78550 * 10 9 8 32 32 H 0.96996 * 120.00192 * 185.02426 * 15 14 12 33 33 H 1.09001 * 117.49714 * 359.97438 * 20 11 10 34 34 H 1.08997 * 117.49969 * 145.02219 * 20 11 10 35 35 H 1.09005 * 117.49570 * 214.98479 * 21 11 10 36 36 H 1.09003 * 117.49638 * 359.96812 * 21 11 10 37 37 H 0.97005 * 120.00380 * 179.97438 * 25 24 22 38 38 H 0.97002 * 120.00379 * 359.97032 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2735 1.1408 0.0000 4 6 3.5305 0.8003 -0.0039 5 6 3.5919 -0.6572 0.0034 6 6 2.2526 -1.1113 0.0057 7 7 2.0005 -2.4172 0.0119 8 6 2.9929 -3.3103 0.0161 9 7 2.7023 -4.5955 0.0227 10 6 1.3084 -5.0307 0.1405 11 6 0.8851 -5.7400 -1.1474 12 6 -0.3194 -6.6378 -1.0291 13 1 -1.0210 -6.7109 -1.8469 14 6 -0.5260 -7.3661 0.1233 15 7 0.4805 -7.6172 0.9318 16 14 -2.2353 -7.9963 0.5364 17 1 -2.7058 -8.8970 -0.5464 18 1 -2.1908 -8.7440 1.8186 19 1 -3.1682 -6.8481 0.6656 20 6 1.9905 -6.1642 -2.1164 21 6 1.0780 -4.9867 -2.4650 22 7 4.3143 -2.9188 0.0146 23 1 5.0181 -3.5863 0.0181 24 6 4.6320 -1.5918 0.0094 25 7 5.9347 -1.1860 0.0073 26 1 -0.3634 0.0052 1.0276 27 1 -0.3632 0.8874 -0.5184 28 1 -0.3633 -0.8925 -0.5094 29 1 4.3742 1.4745 -0.0072 30 1 1.2118 -5.7170 0.9819 31 1 0.6695 -4.1630 0.3043 32 1 0.3513 -8.1901 1.7037 33 1 3.0193 -5.9376 -1.8366 34 1 1.8467 -7.0930 -2.6685 35 1 0.3337 -5.1407 -3.2464 36 1 1.5060 -3.9855 -2.4143 37 1 6.1480 -0.2397 0.0032 38 1 6.6477 -1.8438 0.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330120040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:36 Heat of formation + Delta-G solvation = 155.374700 kcal Electronic energy + Delta-G solvation = -22720.481217 eV Core-core repulsion = 19407.845358 eV Total energy + Delta-G solvation = -3312.635860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.50627 -40.17897 -38.65903 -37.12124 -34.25826 -34.05800 -33.76045 -33.51382 -29.65403 -27.98905 -27.75693 -26.71089 -24.73607 -23.05617 -22.79659 -21.49423 -20.65007 -19.63896 -19.53724 -18.56073 -18.05138 -17.33643 -16.88491 -16.60441 -16.32369 -15.83328 -15.48530 -15.30338 -15.11969 -14.69301 -14.48695 -13.73271 -13.42366 -13.38816 -13.33002 -13.13666 -12.78879 -12.59562 -12.27181 -12.01479 -11.91638 -11.47829 -11.27698 -11.09618 -10.55137 -10.52208 -10.21314 -9.92391 -9.82808 -9.43126 -8.09934 -7.91059 -6.10700 0.02161 0.83189 1.18239 1.40495 1.45539 1.53274 1.54520 1.75615 2.43434 2.54710 2.97806 3.00383 3.45648 3.53908 3.73583 3.88842 4.10148 4.45025 4.45979 4.47714 4.58047 4.72003 4.74203 4.74315 4.92498 4.95120 5.00775 5.23582 5.43698 5.47003 5.62515 5.63379 5.67083 5.68723 6.04854 6.15682 6.21430 6.49383 6.52822 6.77134 6.88167 7.43481 7.50920 7.63660 8.94722 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.004707 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.015129 B = 5947.067226 C = 6661.425106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.425 5.425 3 N -0.298 5.298 4 C 0.157 3.843 5 C -0.428 4.428 6 C 0.416 3.584 7 N -0.661 5.661 8 C 0.539 3.461 9 N -0.624 5.624 10 C 0.131 3.869 11 C 0.036 3.964 12 C -0.527 4.527 13 H 0.050 0.950 14 C 0.030 3.970 15 N -0.890 5.890 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.272 1.272 20 C -0.182 4.182 21 C -0.190 4.190 22 N -0.617 5.617 23 H 0.432 0.568 24 C 0.596 3.404 25 N -0.778 5.778 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.251 0.749 30 H 0.079 0.921 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.446 0.554 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.500 20.452 0.369 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.220 5.220 3 N -0.108 5.108 4 C -0.045 4.045 5 C -0.451 4.451 6 C 0.157 3.843 7 N -0.406 5.406 8 C 0.171 3.829 9 N -0.359 5.359 10 C 0.001 3.999 11 C 0.035 3.965 12 C -0.565 4.565 13 H 0.068 0.932 14 C -0.171 4.171 15 N -0.526 5.526 16 Si 0.777 3.223 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.198 1.198 20 C -0.220 4.220 21 C -0.228 4.228 22 N -0.244 5.244 23 H 0.273 0.727 24 C 0.353 3.647 25 N -0.321 5.321 26 H 0.086 0.914 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.267 0.733 30 H 0.097 0.903 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.283 0.717 38 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 14.041 19.981 0.553 24.427 hybrid contribution 0.108 -0.830 0.099 0.843 sum 14.149 19.151 0.652 23.820 Atomic orbital electron populations 1.21706 0.73634 1.04038 1.03030 1.47885 1.06442 1.00085 1.67559 1.76584 1.03291 1.07430 1.23458 1.25409 0.95432 0.90424 0.93215 1.19297 0.91212 0.95528 1.39026 1.19484 0.89585 0.88164 0.87032 1.68818 1.31059 0.99297 1.41466 1.19810 0.78523 0.91115 0.93467 1.72664 1.22424 1.08523 1.32274 1.20888 0.85388 0.95310 0.98318 1.19190 0.94236 0.95868 0.87186 1.20753 1.07714 1.26664 1.01321 0.93214 1.25723 1.00115 0.95616 0.95681 1.70100 1.31470 1.35026 1.16035 0.85712 0.80568 0.78257 0.77733 1.19437 1.20299 1.19760 1.22683 0.96242 0.95745 1.07318 1.22596 1.03531 0.94518 1.02122 1.42278 1.09016 1.05630 1.67524 0.72677 1.17031 0.86687 0.81723 0.79235 1.42025 1.00893 1.14617 1.74563 0.91414 0.87830 0.91366 0.73285 0.90302 0.96783 0.92753 0.90267 0.92538 0.91485 0.92027 0.71657 0.73669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.20 11.43 127.77 1.46 4.66 16 2 N -0.43 -13.07 4.02 -366.40 -1.47 -14.55 16 3 N -0.30 -7.25 12.39 -53.13 -0.66 -7.91 16 4 C 0.16 2.48 12.08 86.91 1.05 3.53 16 5 C -0.43 -9.68 6.27 -20.13 -0.13 -9.80 16 6 C 0.42 14.30 7.98 134.38 1.07 15.37 16 7 N -0.66 -28.28 8.74 -196.06 -1.71 -29.99 16 8 C 0.54 22.00 8.40 261.65 2.20 24.20 16 9 N -0.62 -30.98 8.89 -351.36 -3.12 -34.11 16 10 C 0.13 7.63 6.17 86.38 0.53 8.17 16 11 C 0.04 2.14 2.32 -52.93 -0.12 2.02 16 12 C -0.53 -32.70 8.98 25.60 0.23 -32.47 16 13 H 0.05 3.06 7.90 -2.91 -0.02 3.04 16 14 C 0.03 1.80 5.05 84.66 0.43 2.22 16 15 N -0.89 -54.97 11.09 21.45 0.24 -54.73 16 16 Si 0.95 46.28 29.59 68.60 2.03 48.31 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 20 C -0.18 -9.95 9.57 30.59 0.29 -9.66 16 21 C -0.19 -10.13 9.78 30.59 0.30 -9.83 16 22 N -0.62 -15.73 5.43 -194.71 -1.06 -16.79 16 23 H 0.43 8.63 8.91 -92.71 -0.83 7.80 16 24 C 0.60 9.89 7.89 132.83 1.05 10.94 16 25 N -0.78 -1.36 8.95 -54.24 -0.49 -1.85 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.25 0.42 8.06 -2.91 -0.02 0.39 16 30 H 0.08 5.08 5.40 -2.38 -0.01 5.07 16 31 H 0.01 0.84 6.69 -2.39 -0.02 0.82 16 32 H 0.26 15.26 8.32 -92.71 -0.77 14.49 16 33 H 0.08 4.20 7.04 -2.39 -0.02 4.18 16 34 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.07 3.45 8.14 -2.38 -0.02 3.43 16 36 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.45 -2.14 8.64 -92.70 -0.80 -2.94 16 38 H 0.43 -1.29 8.93 -92.71 -0.83 -2.12 16 Total: -1.00 -93.00 325.07 0.80 -92.20 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -1.31 Total: 10.06 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 8.36 Total: 9.36 kcal Atomic # 7 Polarization: -151.64 SS G_CDS: -8.27 Total: -159.92 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -93.00 0.80 -92.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330120040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.572 kcal (2) G-P(sol) polarization free energy of solvation -93.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds