Wall clock time and date at job start Tue Mar 31 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42098 * 109.47136 * 2 1 4 4 C 1.81396 * 103.00055 * 243.60851 * 2 1 3 5 5 C 1.53004 * 112.84917 * 306.39178 * 4 2 1 6 6 N 1.46495 * 109.47158 * 292.21326 * 5 4 2 7 7 C 1.34780 * 120.00113 * 184.25595 * 6 5 4 8 8 O 1.21589 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99867 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46860 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46645 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00769 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99443 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99986 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47007 * 359.97438 * 16 14 12 18 18 H 1.48489 * 109.47449 * 119.99888 * 16 14 12 19 19 H 1.48503 * 109.46844 * 240.00430 * 16 14 12 20 20 C 1.53778 * 113.61686 * 175.19582 * 4 2 1 21 21 C 1.53781 * 87.17185 * 270.75977 * 20 4 2 22 22 C 1.53776 * 113.69067 * 77.65746 * 4 2 1 23 23 H 1.08991 * 109.47160 * 181.62398 * 1 2 3 24 24 H 1.08999 * 109.47065 * 301.62538 * 1 2 3 25 25 H 1.09003 * 109.46826 * 61.62196 * 1 2 3 26 26 H 1.09005 * 109.46970 * 52.21123 * 5 4 2 27 27 H 1.08995 * 109.47172 * 172.20949 * 5 4 2 28 28 H 0.97004 * 120.00289 * 4.25434 * 6 5 4 29 29 H 0.97006 * 119.99719 * 0.02562 * 9 7 6 30 30 H 1.09001 * 109.47065 * 299.99665 * 10 9 7 31 31 H 1.08998 * 109.47564 * 59.99904 * 10 9 7 32 32 H 1.08993 * 109.47338 * 299.99988 * 11 10 9 33 33 H 1.09000 * 109.46559 * 60.00344 * 11 10 9 34 34 H 0.97003 * 119.99781 * 179.97438 * 15 14 12 35 35 H 1.09003 * 113.61034 * 25.34951 * 20 4 2 36 36 H 1.09001 * 113.61821 * 156.16383 * 20 4 2 37 37 H 1.08997 * 113.61737 * 89.15746 * 21 20 4 38 38 H 1.09001 * 113.61148 * 220.06379 * 21 20 4 39 39 H 1.09000 * 113.61769 * 203.67695 * 22 4 2 40 40 H 1.09003 * 113.61663 * 334.49621 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 1.5407 -2.1433 -1.7659 6 7 2.1006 -3.1031 -0.8112 7 6 1.7114 -4.3930 -0.8456 8 8 0.8951 -4.7600 -1.6686 9 7 2.2269 -5.2761 0.0323 10 6 1.8034 -6.6781 -0.0047 11 6 2.5344 -7.4607 1.0881 12 6 2.0982 -8.9027 1.0504 13 1 1.3726 -9.2285 0.3199 14 6 2.6263 -9.8063 1.9480 15 7 3.5103 -9.4097 2.8372 16 14 2.0862 -11.5939 1.9009 17 1 1.0897 -11.7815 0.8160 18 1 3.2648 -12.4606 1.6463 19 1 1.4742 -11.9605 3.2033 20 6 3.7288 -0.8064 -1.8905 21 6 3.5328 0.5622 -2.5639 22 6 2.0678 0.1489 -2.7947 23 1 -0.3633 -1.0272 0.0291 24 1 -0.3633 0.5389 0.8750 25 1 -0.3633 0.4885 -0.9042 26 1 0.4699 -2.0389 -1.5904 27 1 1.7092 -2.5007 -2.7817 28 1 2.7516 -2.8103 -0.1544 29 1 2.8779 -4.9833 0.6892 30 1 0.7280 -6.7372 0.1631 31 1 2.0432 -7.1045 -0.9787 32 1 3.6097 -7.4015 0.9200 33 1 2.2948 -7.0343 2.0623 34 1 3.8816 -10.0454 3.4689 35 1 4.3564 -0.7690 -1.0001 36 1 4.0225 -1.5956 -2.5826 37 1 3.6465 1.4048 -1.8818 38 1 4.1040 0.6815 -3.4846 39 1 1.9072 -0.3782 -3.7352 40 1 1.3536 0.9567 -2.6349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331968279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:08 Heat of formation + Delta-G solvation = -54.444079 kcal Electronic energy + Delta-G solvation = -20715.887718 eV Core-core repulsion = 17465.011883 eV Total energy + Delta-G solvation = -3250.875836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95543 -38.89939 -36.08983 -34.97182 -34.14140 -32.80471 -30.04171 -29.31341 -27.87464 -26.08062 -24.68931 -23.08548 -21.05225 -20.65414 -20.35905 -18.23484 -17.39990 -16.64847 -16.37298 -15.99758 -15.32935 -15.17259 -14.96933 -14.49844 -14.21019 -14.16915 -13.99351 -13.52014 -13.35846 -12.86090 -12.80769 -12.74628 -12.35733 -12.25551 -12.03880 -11.61072 -11.17389 -11.04881 -10.89594 -10.76619 -10.61244 -10.32383 -10.18360 -9.95901 -9.55756 -9.24225 -9.09072 -8.55804 -8.47595 -8.24666 -6.09087 -4.11360 1.16641 2.21136 2.95887 3.28852 3.36764 3.38697 3.42006 3.58283 4.01548 4.15739 4.40085 4.42171 4.44383 4.72750 4.80312 4.95830 5.03986 5.28391 5.28441 5.33466 5.34887 5.49762 5.57308 5.59776 5.72998 5.79418 6.01966 6.29645 6.40498 6.52243 6.78464 6.99629 7.21249 7.57573 7.64263 7.90529 8.26324 8.42655 8.93236 8.98948 9.53536 11.02536 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.002813 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.046014 B = 9950.331251 C =10075.482566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 1.265 4.735 3 O -0.844 6.844 4 C -0.425 4.425 5 C 0.182 3.818 6 N -0.753 5.753 7 C 0.699 3.301 8 O -0.598 6.598 9 N -0.738 5.738 10 C 0.140 3.860 11 C 0.012 3.988 12 C -0.520 4.520 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.091 4.091 21 C -0.153 4.153 22 C -0.108 4.108 23 H 0.119 0.881 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.395 0.605 29 H 0.394 0.606 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 19.795 -5.528 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.462 4.538 3 O -0.839 6.839 4 C -0.522 4.522 5 C 0.056 3.944 6 N -0.410 5.410 7 C 0.399 3.601 8 O -0.477 6.477 9 N -0.391 5.391 10 C 0.017 3.983 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.130 4.130 21 C -0.191 4.191 22 C -0.147 4.147 23 H 0.137 0.863 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.229 0.771 29 H 0.227 0.773 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.893 19.710 -5.473 20.475 hybrid contribution -0.566 0.351 -1.097 1.284 sum -1.459 20.061 -6.570 21.160 Atomic orbital electron populations 1.27611 1.20797 1.08847 1.07197 1.70560 0.87090 0.98629 0.97567 1.93087 1.73594 1.36772 1.80461 1.29472 1.04003 1.03793 1.14946 1.20638 0.96420 0.83505 0.93796 1.45087 1.49219 1.07859 1.38881 1.16032 0.81533 0.80360 0.82171 1.90903 1.37506 1.78486 1.40776 1.45532 1.47086 1.10439 1.36052 1.21591 0.99120 0.76610 1.00968 1.19332 0.95818 0.94586 0.92779 1.21095 1.24815 0.93165 1.16795 0.92202 1.24988 0.94939 0.99083 0.95280 1.69960 1.29213 1.34903 1.19231 0.86476 0.78549 0.84675 0.77980 1.19589 1.20985 1.20968 1.22503 0.90931 0.98272 1.01274 1.23094 0.96026 0.98132 1.01837 1.22781 0.97981 0.97066 0.96860 0.86281 0.87589 0.89740 0.91498 0.90947 0.77124 0.77252 0.92745 0.92846 0.95944 0.95871 0.92930 0.90726 0.88752 0.88542 0.90940 0.89250 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -3.37 10.05 101.05 1.02 -2.36 16 2 S 1.26 9.22 13.14 -107.50 -1.41 7.81 16 3 O -0.84 -10.61 16.24 -35.23 -0.57 -11.18 16 4 C -0.43 -3.22 0.77 -89.81 -0.07 -3.29 16 5 C 0.18 1.67 4.91 -4.04 -0.02 1.65 16 6 N -0.75 -7.55 5.33 -65.22 -0.35 -7.90 16 7 C 0.70 10.78 8.57 -86.91 -0.74 10.04 16 8 O -0.60 -11.90 16.34 5.29 0.09 -11.81 16 9 N -0.74 -11.69 5.56 -65.22 -0.36 -12.05 16 10 C 0.14 2.84 5.61 -4.04 -0.02 2.81 16 11 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 12 C -0.52 -14.05 9.11 -34.44 -0.31 -14.36 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 16 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.09 -0.68 6.97 -25.92 -0.18 -0.86 16 21 C -0.15 -1.31 7.68 -25.83 -0.20 -1.50 16 22 C -0.11 -0.90 7.15 -25.83 -0.18 -1.08 16 23 H 0.12 0.72 7.26 -51.93 -0.38 0.35 16 24 H 0.11 0.68 8.14 -51.92 -0.42 0.26 16 25 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.07 0.62 6.62 -51.93 -0.34 0.27 16 27 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 28 H 0.40 2.67 8.29 -40.82 -0.34 2.33 16 29 H 0.39 5.13 8.49 -40.82 -0.35 4.78 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 36 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.10 1.00 6.75 -51.93 -0.35 0.65 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.69 8.01 -51.93 -0.42 0.27 16 40 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -35.56 342.90 -9.03 -44.59 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.35 Total: 1.48 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -0.96 Total: -7.29 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.03 Total: -44.72 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.49 Total: -23.00 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 9.22 SS G_CDS: -1.41 Total: 7.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.56 -9.03 -44.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331968279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.854 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds