Wall clock time and date at job start Tue Mar 31 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42098 * 109.47136 * 2 1 4 4 C 1.81396 * 103.00055 * 243.60851 * 2 1 3 5 5 C 1.53004 * 112.84917 * 306.39178 * 4 2 1 6 6 N 1.46495 * 109.47158 * 292.21326 * 5 4 2 7 7 C 1.34780 * 120.00113 * 184.25595 * 6 5 4 8 8 O 1.21589 * 119.99954 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00109 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99867 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46860 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46645 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00769 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99443 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00193 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99986 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47007 * 359.97438 * 16 14 12 18 18 H 1.48489 * 109.47449 * 119.99888 * 16 14 12 19 19 H 1.48503 * 109.46844 * 240.00430 * 16 14 12 20 20 C 1.53778 * 113.61686 * 175.19582 * 4 2 1 21 21 C 1.53781 * 87.17185 * 270.75977 * 20 4 2 22 22 C 1.53776 * 113.69067 * 77.65746 * 4 2 1 23 23 H 1.08991 * 109.47160 * 181.62398 * 1 2 3 24 24 H 1.08999 * 109.47065 * 301.62538 * 1 2 3 25 25 H 1.09003 * 109.46826 * 61.62196 * 1 2 3 26 26 H 1.09005 * 109.46970 * 52.21123 * 5 4 2 27 27 H 1.08995 * 109.47172 * 172.20949 * 5 4 2 28 28 H 0.97004 * 120.00289 * 4.25434 * 6 5 4 29 29 H 0.97006 * 119.99719 * 0.02562 * 9 7 6 30 30 H 1.09001 * 109.47065 * 299.99665 * 10 9 7 31 31 H 1.08998 * 109.47564 * 59.99904 * 10 9 7 32 32 H 1.08993 * 109.47338 * 299.99988 * 11 10 9 33 33 H 1.09000 * 109.46559 * 60.00344 * 11 10 9 34 34 H 0.97003 * 119.99781 * 179.97438 * 15 14 12 35 35 H 1.09003 * 113.61034 * 25.34951 * 20 4 2 36 36 H 1.09001 * 113.61821 * 156.16383 * 20 4 2 37 37 H 1.08997 * 113.61737 * 89.15746 * 21 20 4 38 38 H 1.09001 * 113.61148 * 220.06379 * 21 20 4 39 39 H 1.09000 * 113.61769 * 203.67695 * 22 4 2 40 40 H 1.09003 * 113.61663 * 334.49621 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2221 -0.7856 -1.5833 5 6 1.5407 -2.1433 -1.7659 6 7 2.1006 -3.1031 -0.8112 7 6 1.7114 -4.3930 -0.8456 8 8 0.8951 -4.7600 -1.6686 9 7 2.2269 -5.2761 0.0323 10 6 1.8034 -6.6781 -0.0047 11 6 2.5344 -7.4607 1.0881 12 6 2.0982 -8.9027 1.0504 13 1 1.3726 -9.2285 0.3199 14 6 2.6263 -9.8063 1.9480 15 7 3.5103 -9.4097 2.8372 16 14 2.0862 -11.5939 1.9009 17 1 1.0897 -11.7815 0.8160 18 1 3.2648 -12.4606 1.6463 19 1 1.4742 -11.9605 3.2033 20 6 3.7288 -0.8064 -1.8905 21 6 3.5328 0.5622 -2.5639 22 6 2.0678 0.1489 -2.7947 23 1 -0.3633 -1.0272 0.0291 24 1 -0.3633 0.5389 0.8750 25 1 -0.3633 0.4885 -0.9042 26 1 0.4699 -2.0389 -1.5904 27 1 1.7092 -2.5007 -2.7817 28 1 2.7516 -2.8103 -0.1544 29 1 2.8779 -4.9833 0.6892 30 1 0.7280 -6.7372 0.1631 31 1 2.0432 -7.1045 -0.9787 32 1 3.6097 -7.4015 0.9200 33 1 2.2948 -7.0343 2.0623 34 1 3.8816 -10.0454 3.4689 35 1 4.3564 -0.7690 -1.0001 36 1 4.0225 -1.5956 -2.5826 37 1 3.6465 1.4048 -1.8818 38 1 4.1040 0.6815 -3.4846 39 1 1.9072 -0.3782 -3.7352 40 1 1.3536 0.9567 -2.6349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331968279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:07 Heat of formation + Delta-G solvation = -81.300543 kcal Electronic energy + Delta-G solvation = -20717.052302 eV Core-core repulsion = 17465.011883 eV Total energy + Delta-G solvation = -3252.040419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02306 -39.80365 -36.96271 -36.50306 -35.25730 -34.68877 -31.56798 -30.14170 -28.83357 -26.76103 -26.43392 -23.99601 -22.74940 -21.84662 -21.11571 -19.43055 -18.34104 -18.12373 -17.45384 -17.00398 -16.52898 -16.43860 -16.08143 -15.70233 -15.26474 -15.19342 -14.94525 -14.76946 -14.49583 -14.21854 -13.77219 -13.50548 -13.43417 -13.11391 -13.04277 -12.90298 -12.78574 -12.45736 -12.32587 -12.13301 -11.62068 -11.58396 -11.44314 -11.37890 -11.07561 -10.91460 -10.53729 -10.22511 -9.60506 -9.22386 -8.17620 -6.26431 0.53037 1.45139 1.46966 1.58064 1.59320 1.86062 2.31758 2.46656 2.71162 3.17710 3.25238 3.48401 3.62061 3.74576 3.79243 4.21323 4.31723 4.42731 4.54495 4.61111 4.64393 4.65694 4.72154 4.83042 4.88853 4.95740 4.99813 5.09894 5.14627 5.34255 5.43585 5.56626 5.63317 5.71982 5.89313 6.19794 6.26481 6.87687 7.29263 7.42854 7.75106 8.94180 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.032549 B = 0.002813 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.046014 B = 9950.331251 C =10075.482566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.489 4.489 2 S 1.305 4.695 3 O -0.895 6.895 4 C -0.415 4.415 5 C 0.185 3.815 6 N -0.728 5.728 7 C 0.702 3.298 8 O -0.642 6.642 9 N -0.732 5.732 10 C 0.161 3.839 11 C 0.023 3.977 12 C -0.543 4.543 13 H 0.057 0.943 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.960 3.040 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.278 1.278 20 C -0.089 4.089 21 C -0.157 4.157 22 C -0.111 4.111 23 H 0.132 0.868 24 H 0.113 0.887 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.415 0.585 29 H 0.410 0.590 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.010 0.990 33 H 0.013 0.987 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 19.704 -5.530 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 1.503 4.497 3 O -0.891 6.891 4 C -0.513 4.513 5 C 0.059 3.941 6 N -0.386 5.386 7 C 0.401 3.599 8 O -0.524 6.524 9 N -0.387 5.387 10 C 0.036 3.964 11 C -0.015 4.015 12 C -0.582 4.582 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.785 3.215 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.204 1.204 20 C -0.128 4.128 21 C -0.195 4.195 22 C -0.150 4.150 23 H 0.150 0.850 24 H 0.132 0.868 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.252 0.748 29 H 0.246 0.754 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.988 19.682 -5.452 20.447 hybrid contribution -0.552 0.439 -1.127 1.330 sum -1.539 20.122 -6.579 21.226 Atomic orbital electron populations 1.27621 1.19927 1.09816 1.07395 1.69979 0.86841 0.96535 0.96333 1.93008 1.75297 1.39244 1.81505 1.29369 1.04295 1.02640 1.14960 1.20677 0.96880 0.83559 0.92959 1.44825 1.48762 1.05996 1.39010 1.16073 0.80973 0.81497 0.81315 1.90881 1.39482 1.79573 1.42427 1.45172 1.47616 1.08981 1.36892 1.21032 0.97934 0.78604 0.98809 1.19139 0.95196 0.93828 0.93329 1.21519 1.24854 0.95015 1.16785 0.92461 1.25801 0.94977 1.03321 0.94939 1.70052 1.30160 1.36393 1.19889 0.85469 0.78267 0.79576 0.78164 1.19071 1.20470 1.20362 1.22552 0.90736 0.97579 1.01909 1.23048 0.96367 0.98092 1.01949 1.22825 0.97727 0.96992 0.97425 0.84969 0.86843 0.90195 0.90957 0.91926 0.74828 0.75412 0.93743 0.94163 0.97202 0.96877 0.92661 0.89247 0.88357 0.90446 0.90145 0.88479 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -5.88 10.05 113.37 1.14 -4.75 16 2 S 1.30 17.04 13.14 -56.49 -0.74 16.30 16 3 O -0.89 -21.94 16.24 -148.98 -2.42 -24.36 16 4 C -0.42 -5.58 0.77 -10.27 -0.01 -5.59 16 5 C 0.18 3.02 4.91 86.38 0.42 3.45 16 6 N -0.73 -12.95 5.33 -478.53 -2.55 -15.50 16 7 C 0.70 20.53 8.57 179.05 1.53 22.07 16 8 O -0.64 -24.95 16.34 -4.00 -0.07 -25.01 16 9 N -0.73 -22.25 5.56 -478.52 -2.66 -24.91 16 10 C 0.16 6.47 5.61 86.38 0.48 6.96 16 11 C 0.02 1.08 5.09 29.85 0.15 1.23 16 12 C -0.54 -29.35 9.11 25.60 0.23 -29.11 16 13 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 14 C 0.01 0.45 5.46 84.66 0.46 0.92 16 15 N -0.93 -52.63 13.29 21.45 0.28 -52.34 16 16 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 20 C -0.09 -1.15 6.97 31.12 0.22 -0.94 16 21 C -0.16 -2.51 7.68 31.18 0.24 -2.27 16 22 C -0.11 -1.71 7.15 31.18 0.22 -1.49 16 23 H 0.13 1.28 7.26 -2.39 -0.02 1.26 16 24 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.17 6.62 -2.38 -0.02 1.16 16 27 H 0.06 1.23 8.02 -2.39 -0.02 1.21 16 28 H 0.41 4.39 8.29 -92.71 -0.77 3.62 16 29 H 0.41 9.92 8.49 -92.70 -0.79 9.13 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 35 H 0.09 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.08 1.58 6.75 -2.39 -0.02 1.57 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.35 8.01 -2.39 -0.02 1.33 16 40 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 Total: -1.00 -75.87 342.90 -1.54 -77.40 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -0.51 Total: 13.28 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 5.10 Total: -9.52 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -4.93 Total: -92.76 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -2.49 Total: -49.37 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 17.04 SS G_CDS: -0.74 Total: 16.30 kcal Total: -75.87 -1.54 -77.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331968279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.898 kcal (2) G-P(sol) polarization free energy of solvation -75.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds