Wall clock time and date at job start Tue Mar 31 2020 02:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21275 * 120.00089 * 2 1 4 4 N 1.34774 * 119.99840 * 179.97438 * 2 1 3 5 5 C 1.47068 * 136.05907 * 359.63197 * 4 2 1 6 6 C 1.53751 * 87.88938 * 152.96397 * 5 4 2 7 7 N 1.46505 * 114.57445 * 272.66569 * 6 5 4 8 8 C 1.34777 * 119.99788 * 248.67609 * 7 6 5 9 9 O 1.21585 * 120.00262 * 359.97438 * 8 7 6 10 10 C 1.47647 * 119.99454 * 180.02562 * 8 7 6 11 11 C 1.40011 * 119.89759 * 359.71904 * 10 8 7 12 12 C 1.36321 * 120.10292 * 179.71896 * 11 10 8 13 13 C 1.40890 * 119.89415 * 0.58230 * 12 11 10 14 14 C 1.41105 * 120.10505 * 179.67541 * 13 12 11 15 15 H 1.07996 * 119.99628 * 204.64871 * 14 13 12 16 16 C 1.40225 * 120.00141 * 24.64826 * 14 13 12 17 17 N 1.30651 * 119.99680 * 17.86446 * 16 14 13 18 18 Si 1.86797 * 120.00219 * 197.86733 * 16 14 13 19 19 H 1.48496 * 109.47229 * 59.99655 * 18 16 14 20 20 H 1.48499 * 109.47203 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46925 * 299.99905 * 18 16 14 22 22 C 1.40889 * 119.78961 * 359.69193 * 13 12 11 23 23 C 1.36315 * 119.89655 * 0.02562 * 22 13 12 24 24 C 1.47068 * 136.05746 * 180.02562 * 4 2 1 25 25 H 1.09008 * 109.47135 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47575 * 240.00403 * 1 2 3 27 27 H 1.08999 * 109.46825 * 120.00337 * 1 2 3 28 28 H 1.09003 * 113.46856 * 267.70244 * 5 4 2 29 29 H 1.09009 * 113.46344 * 38.13346 * 5 4 2 30 30 H 1.08998 * 114.08848 * 139.78036 * 6 5 4 31 31 H 0.97003 * 119.99668 * 68.66627 * 7 6 5 32 32 H 1.07999 * 119.94550 * 0.02562 * 11 10 8 33 33 H 1.08002 * 120.04903 * 180.25062 * 12 11 10 34 34 H 0.96996 * 119.99495 * 180.02562 * 17 16 14 35 35 H 1.08006 * 120.05235 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.95274 * 179.97438 * 23 22 13 37 37 H 1.08996 * 113.46803 * 321.86489 * 24 4 2 38 38 H 1.09001 * 113.46564 * 92.24625 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1645 -2.8719 -0.6971 7 7 3.1139 -2.7798 -2.1584 8 6 3.2539 -3.8905 -2.9089 9 8 3.4227 -4.9689 -2.3732 10 6 3.2035 -3.7975 -4.3815 11 6 3.0043 -2.5553 -4.9960 12 6 2.9628 -2.4638 -6.3555 13 6 3.1084 -3.6235 -7.1421 14 6 3.0593 -3.5348 -8.5495 15 1 2.7733 -4.3960 -9.1351 16 6 3.3819 -2.3287 -9.1878 17 7 4.0510 -1.4084 -8.5455 18 14 2.8551 -2.0376 -10.9561 19 1 1.3748 -2.1082 -11.0496 20 1 3.3149 -0.6956 -11.3951 21 1 3.4564 -3.0775 -11.8292 22 6 3.3029 -4.8721 -6.5190 23 6 3.3488 -4.9529 -5.1590 24 6 3.5941 -1.5740 0.0012 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5137 0.8899 27 1 -0.3633 -0.5139 -0.8900 28 1 1.7664 -3.0218 1.0087 29 1 0.9552 -2.8285 -0.6041 30 1 3.6795 -3.7634 -0.3392 31 1 2.9796 -1.9194 -2.5857 32 1 2.8883 -1.6675 -4.3920 33 1 2.8131 -1.5045 -6.8286 34 1 4.2738 -0.5739 -8.9869 35 1 3.4147 -5.7639 -7.1179 36 1 3.4975 -5.9096 -4.6804 37 1 4.2291 -0.9385 -0.6161 38 1 4.0000 -1.7315 1.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335656063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:26 Heat of formation + Delta-G solvation = -19.329981 kcal Electronic energy + Delta-G solvation = -21809.435650 eV Core-core repulsion = 18424.638525 eV Total energy + Delta-G solvation = -3384.797125 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72105 -38.96689 -37.86210 -36.95251 -33.92660 -33.31725 -31.00222 -30.09666 -29.49158 -28.06380 -26.14447 -25.90683 -22.71680 -21.41204 -20.87495 -19.88648 -18.98089 -17.57196 -17.26606 -16.77469 -16.32593 -15.83476 -15.51575 -15.24919 -14.29268 -14.12556 -14.05538 -13.71689 -13.20206 -13.16496 -12.90824 -12.78317 -12.71938 -12.27491 -12.20817 -11.97138 -11.88619 -11.43708 -11.29671 -11.10440 -11.02084 -10.69331 -10.11871 -9.96130 -9.60488 -9.39531 -9.16332 -8.91619 -8.75600 -7.77646 -7.60414 -7.08117 -4.65474 2.15341 2.49053 2.69604 2.89165 2.92279 2.95590 2.99159 3.50420 3.68562 3.72665 4.21398 4.40072 4.59210 4.79946 5.02732 5.08974 5.17966 5.24622 5.33670 5.46340 5.51901 5.53753 5.57286 5.76332 5.99587 6.07124 6.26289 6.72184 6.77628 6.79990 6.99154 7.08067 7.38087 7.55077 7.59443 7.72968 7.80921 8.00575 8.01887 8.11090 8.34848 8.57963 8.70051 8.93897 9.83692 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.003657 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.814794 B = 7655.267096 C = 8681.180533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.539 3.461 3 O -0.549 6.549 4 N -0.648 5.648 5 C 0.081 3.919 6 C 0.117 3.883 7 N -0.721 5.721 8 C 0.577 3.423 9 O -0.572 6.572 10 C -0.288 4.288 11 C -0.061 4.061 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.441 4.441 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.769 5.769 18 Si 0.914 3.086 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.239 4.239 23 C -0.019 4.019 24 C 0.090 3.910 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.124 0.876 31 H 0.401 0.599 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.288 0.712 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 1.230 10.985 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.330 3.670 3 O -0.426 6.426 4 N -0.385 5.385 5 C -0.043 4.043 6 C 0.009 3.991 7 N -0.373 5.373 8 C 0.373 3.627 9 O -0.454 6.454 10 C -0.293 4.293 11 C -0.081 4.081 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.468 4.468 15 H 0.103 0.897 16 C -0.148 4.148 17 N -0.392 5.392 18 Si 0.738 3.262 19 H -0.184 1.184 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.259 4.259 23 C -0.039 4.039 24 C -0.033 4.033 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.142 0.858 31 H 0.237 0.763 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.461 1.499 11.313 12.253 hybrid contribution -0.262 0.734 -0.869 1.167 sum -4.723 2.232 10.444 11.677 Atomic orbital electron populations 1.21853 0.91192 1.05304 1.04322 1.20413 0.90160 0.81340 0.75128 1.90732 1.70908 1.30408 1.50597 1.49771 1.09423 1.05767 1.73553 1.23742 1.00453 0.78989 1.01158 1.22022 0.95904 0.98727 0.82485 1.45551 1.76291 1.11399 1.04040 1.18623 0.73895 0.82482 0.87740 1.90634 1.52073 1.28053 1.74644 1.18826 1.25732 0.95108 0.89634 1.20464 0.98118 0.94271 0.95218 1.20978 1.07290 0.99488 0.91975 1.17789 0.85129 0.91141 0.93335 1.19851 1.37770 0.97091 0.92118 0.89652 1.26116 0.92253 0.95085 1.01303 1.69733 1.24079 1.06344 1.39040 0.86246 0.80510 0.78542 0.80919 1.18435 1.19999 1.18605 1.20716 1.14008 0.97618 0.93558 1.20351 0.94124 0.95983 0.93401 1.23438 0.84621 0.94128 1.01123 0.88925 0.89608 0.89244 0.88712 0.89787 0.85840 0.76327 0.89482 0.86216 0.90059 0.88332 0.88037 0.89822 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.15 36.01 0.37 -1.11 16 2 C 0.54 7.01 8.19 -10.99 -0.09 6.92 16 3 O -0.55 -9.52 17.86 5.56 0.10 -9.42 16 4 N -0.65 -7.43 3.69 -185.06 -0.68 -8.11 16 5 C 0.08 0.78 8.26 -8.38 -0.07 0.71 16 6 C 0.12 1.39 4.61 -67.67 -0.31 1.07 16 7 N -0.72 -11.15 5.35 -54.48 -0.29 -11.44 16 8 C 0.58 11.40 7.76 -12.42 -0.10 11.30 16 9 O -0.57 -12.47 15.91 5.29 0.08 -12.39 16 10 C -0.29 -6.34 5.89 -104.72 -0.62 -6.95 16 11 C -0.06 -1.34 9.47 -39.61 -0.38 -1.71 16 12 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 13 C 0.13 3.23 5.58 -106.80 -0.60 2.64 16 14 C -0.44 -10.78 9.04 -37.75 -0.34 -11.12 16 15 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 16 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 17 N -0.77 -18.27 10.95 55.56 0.61 -17.66 16 18 Si 0.91 17.03 29.60 -169.99 -5.03 12.00 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 22 C -0.24 -5.65 9.73 -39.27 -0.38 -6.03 16 23 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 24 C 0.09 0.97 8.38 -8.50 -0.07 0.90 16 25 H 0.09 0.79 8.12 -51.92 -0.42 0.37 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.83 8.14 -51.92 -0.42 0.40 16 30 H 0.12 1.48 7.45 -51.93 -0.39 1.09 16 31 H 0.40 6.08 6.76 -40.82 -0.28 5.80 16 32 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 33 H 0.12 2.95 6.16 -52.49 -0.32 2.63 16 34 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 35 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 36 H 0.10 2.21 7.63 -52.49 -0.40 1.81 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -30.22 330.64 -8.27 -38.49 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.65 Total: 10.78 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -3.39 Total: -7.23 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.37 Total: -37.21 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.18 Total: -21.81 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.22 -8.27 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335656063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.162 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds