Wall clock time and date at job start Tue Mar 31 2020 02:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21275 * 120.00089 * 2 1 4 4 N 1.34774 * 119.99840 * 179.97438 * 2 1 3 5 5 C 1.47068 * 136.05907 * 359.63197 * 4 2 1 6 6 C 1.53751 * 87.88938 * 152.96397 * 5 4 2 7 7 N 1.46505 * 114.57445 * 272.66569 * 6 5 4 8 8 C 1.34777 * 119.99788 * 248.67609 * 7 6 5 9 9 O 1.21585 * 120.00262 * 359.97438 * 8 7 6 10 10 C 1.47647 * 119.99454 * 180.02562 * 8 7 6 11 11 C 1.40011 * 119.89759 * 359.71904 * 10 8 7 12 12 C 1.36321 * 120.10292 * 179.71896 * 11 10 8 13 13 C 1.40890 * 119.89415 * 0.58230 * 12 11 10 14 14 C 1.41105 * 120.10505 * 179.67541 * 13 12 11 15 15 H 1.07996 * 119.99628 * 204.64871 * 14 13 12 16 16 C 1.40225 * 120.00141 * 24.64826 * 14 13 12 17 17 N 1.30651 * 119.99680 * 17.86446 * 16 14 13 18 18 Si 1.86797 * 120.00219 * 197.86733 * 16 14 13 19 19 H 1.48496 * 109.47229 * 59.99655 * 18 16 14 20 20 H 1.48499 * 109.47203 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46925 * 299.99905 * 18 16 14 22 22 C 1.40889 * 119.78961 * 359.69193 * 13 12 11 23 23 C 1.36315 * 119.89655 * 0.02562 * 22 13 12 24 24 C 1.47068 * 136.05746 * 180.02562 * 4 2 1 25 25 H 1.09008 * 109.47135 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47575 * 240.00403 * 1 2 3 27 27 H 1.08999 * 109.46825 * 120.00337 * 1 2 3 28 28 H 1.09003 * 113.46856 * 267.70244 * 5 4 2 29 29 H 1.09009 * 113.46344 * 38.13346 * 5 4 2 30 30 H 1.08998 * 114.08848 * 139.78036 * 6 5 4 31 31 H 0.97003 * 119.99668 * 68.66627 * 7 6 5 32 32 H 1.07999 * 119.94550 * 0.02562 * 11 10 8 33 33 H 1.08002 * 120.04903 * 180.25062 * 12 11 10 34 34 H 0.96996 * 119.99495 * 180.02562 * 17 16 14 35 35 H 1.08006 * 120.05235 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.95274 * 179.97438 * 23 22 13 37 37 H 1.08996 * 113.46803 * 321.86489 * 24 4 2 38 38 H 1.09001 * 113.46564 * 92.24625 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1645 -2.8719 -0.6971 7 7 3.1139 -2.7798 -2.1584 8 6 3.2539 -3.8905 -2.9089 9 8 3.4227 -4.9689 -2.3732 10 6 3.2035 -3.7975 -4.3815 11 6 3.0043 -2.5553 -4.9960 12 6 2.9628 -2.4638 -6.3555 13 6 3.1084 -3.6235 -7.1421 14 6 3.0593 -3.5348 -8.5495 15 1 2.7733 -4.3960 -9.1351 16 6 3.3819 -2.3287 -9.1878 17 7 4.0510 -1.4084 -8.5455 18 14 2.8551 -2.0376 -10.9561 19 1 1.3748 -2.1082 -11.0496 20 1 3.3149 -0.6956 -11.3951 21 1 3.4564 -3.0775 -11.8292 22 6 3.3029 -4.8721 -6.5190 23 6 3.3488 -4.9529 -5.1590 24 6 3.5941 -1.5740 0.0012 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5137 0.8899 27 1 -0.3633 -0.5139 -0.8900 28 1 1.7664 -3.0218 1.0087 29 1 0.9552 -2.8285 -0.6041 30 1 3.6795 -3.7634 -0.3392 31 1 2.9796 -1.9194 -2.5857 32 1 2.8883 -1.6675 -4.3920 33 1 2.8131 -1.5045 -6.8286 34 1 4.2738 -0.5739 -8.9869 35 1 3.4147 -5.7639 -7.1179 36 1 3.4975 -5.9096 -4.6804 37 1 4.2291 -0.9385 -0.6161 38 1 4.0000 -1.7315 1.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335656063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:46:26 Heat of formation + Delta-G solvation = -38.740531 kcal Electronic energy + Delta-G solvation = -21810.277355 eV Core-core repulsion = 18424.638525 eV Total energy + Delta-G solvation = -3385.638830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75562 -40.42908 -39.16386 -38.51153 -35.67896 -34.68126 -32.23163 -31.52114 -31.28590 -29.04043 -27.60967 -26.94079 -24.21190 -22.93726 -22.40241 -21.38358 -19.95779 -19.36380 -18.56274 -17.92743 -17.52922 -17.06423 -16.76614 -16.46707 -15.75840 -15.69328 -15.56529 -15.13244 -14.64108 -14.40768 -14.11087 -13.95186 -13.76611 -13.66228 -13.48867 -13.20766 -13.06961 -12.88250 -12.85632 -12.62351 -12.37438 -12.05791 -11.79704 -11.37888 -11.12618 -10.99272 -10.77042 -10.11347 -9.82942 -9.58379 -9.41889 -8.80550 -6.49567 0.42852 1.14729 1.38165 1.43690 1.51696 1.54411 1.82652 2.09098 2.16486 2.24050 2.75788 3.32247 3.57616 3.70588 3.88717 4.17217 4.26139 4.30893 4.32299 4.45508 4.47763 4.57780 4.61621 4.64299 4.76578 4.85945 4.92310 5.01904 5.05524 5.15134 5.28842 5.54915 5.60409 5.81843 5.93326 5.98725 6.22137 6.53085 6.59202 6.68245 6.76288 6.87909 7.05004 7.39721 8.14251 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.003657 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.814794 B = 7655.267096 C = 8681.180533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.529 3.471 3 O -0.603 6.603 4 N -0.651 5.651 5 C 0.096 3.904 6 C 0.103 3.897 7 N -0.709 5.709 8 C 0.582 3.418 9 O -0.593 6.593 10 C -0.295 4.295 11 C -0.054 4.054 12 C -0.200 4.200 13 C 0.102 3.898 14 C -0.474 4.474 15 H 0.087 0.913 16 C 0.038 3.962 17 N -0.800 5.800 18 Si 0.987 3.013 19 H -0.257 1.257 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.253 4.253 23 C -0.028 4.028 24 C 0.093 3.907 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.403 0.597 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.296 0.704 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.833 1.245 12.092 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.322 3.678 3 O -0.485 6.485 4 N -0.386 5.386 5 C -0.028 4.028 6 C -0.003 4.003 7 N -0.359 5.359 8 C 0.376 3.624 9 O -0.476 6.476 10 C -0.299 4.299 11 C -0.073 4.073 12 C -0.219 4.219 13 C 0.099 3.901 14 C -0.501 4.501 15 H 0.105 0.895 16 C -0.181 4.181 17 N -0.423 5.423 18 Si 0.807 3.193 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.272 4.272 23 C -0.048 4.048 24 C -0.030 4.030 25 H 0.110 0.890 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.104 0.896 30 H 0.146 0.854 31 H 0.239 0.761 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.406 1.497 12.462 13.666 hybrid contribution 0.077 0.689 -1.062 1.268 sum -5.328 2.185 11.400 12.772 Atomic orbital electron populations 1.21867 0.88041 1.05947 1.06020 1.21165 0.91719 0.80819 0.74105 1.90705 1.72222 1.32308 1.53287 1.49888 1.09867 1.06331 1.72559 1.23826 0.98716 0.77439 1.02778 1.22284 0.98314 0.99574 0.80146 1.45402 1.74665 1.10096 1.05767 1.18244 0.73997 0.83172 0.87011 1.90622 1.53204 1.29034 1.74776 1.19168 1.24520 0.94812 0.91403 1.20664 0.96685 0.95303 0.94663 1.20992 1.08985 0.98968 0.92988 1.18125 0.85910 0.91885 0.94167 1.20124 1.39342 0.98335 0.92338 0.89466 1.26936 0.91521 0.94203 1.05434 1.69767 1.24598 1.06952 1.40974 0.85164 0.79971 0.78749 0.75450 1.18158 1.18975 1.18113 1.20873 1.14491 0.97661 0.94175 1.20525 0.94141 0.96793 0.93305 1.23546 0.84419 0.92748 1.02328 0.88968 0.86909 0.88233 0.84889 0.89575 0.85423 0.76129 0.86832 0.87257 0.89237 0.87636 0.87338 0.91464 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 10.15 71.24 0.72 -1.70 16 2 C 0.53 12.90 8.19 87.66 0.72 13.62 16 3 O -0.60 -20.78 17.86 -3.01 -0.05 -20.84 16 4 N -0.65 -13.24 3.69 -857.81 -3.16 -16.40 16 5 C 0.10 1.47 8.26 83.26 0.69 2.16 16 6 C 0.10 2.19 4.61 45.55 0.21 2.40 16 7 N -0.71 -20.70 5.35 -444.54 -2.38 -23.08 16 8 C 0.58 22.29 7.76 86.73 0.67 22.97 16 9 O -0.59 -25.08 15.91 -3.98 -0.06 -25.14 16 10 C -0.29 -12.86 5.89 -19.93 -0.12 -12.98 16 11 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 12 C -0.20 -9.87 8.63 22.47 0.19 -9.68 16 13 C 0.10 5.25 5.58 -21.28 -0.12 5.13 16 14 C -0.47 -23.75 9.04 23.46 0.21 -23.54 16 15 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 16 C 0.04 1.77 5.14 85.35 0.44 2.20 16 17 N -0.80 -38.52 10.95 21.87 0.24 -38.28 16 18 Si 0.99 34.69 29.60 68.60 2.03 36.72 16 19 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 20 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 21 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 22 C -0.25 -12.19 9.73 22.47 0.22 -11.97 16 23 C -0.03 -1.31 9.52 22.25 0.21 -1.10 16 24 C 0.09 1.76 8.38 83.18 0.70 2.46 16 25 H 0.09 1.42 8.12 -2.38 -0.02 1.40 16 26 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.13 2.71 7.45 -2.39 -0.02 2.69 16 31 H 0.40 11.59 6.76 -92.71 -0.63 10.96 16 32 H 0.11 4.20 6.37 -2.91 -0.02 4.18 16 33 H 0.11 5.55 6.16 -2.91 -0.02 5.53 16 34 H 0.30 12.80 8.29 -92.71 -0.77 12.03 16 35 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 36 H 0.11 4.75 7.63 -2.91 -0.02 4.72 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.13 330.64 2.03 -65.09 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.47 Total: 34.07 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.96 Total: -12.15 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -5.30 Total: -77.76 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.12 Total: -45.98 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Total: -67.13 2.03 -65.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335656063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.353 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds