Wall clock time and date at job start Tue Mar 31 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37102 * 120.00294 * 2 1 4 4 H 1.07994 * 119.99764 * 160.56701 * 3 2 1 5 5 C 1.38944 * 119.99827 * 340.56953 * 3 2 1 6 6 N 1.31413 * 120.00341 * 331.20604 * 5 3 2 7 7 Si 1.86800 * 120.00008 * 151.20236 * 5 3 2 8 8 H 1.48495 * 109.47313 * 180.02562 * 7 5 3 9 9 H 1.48508 * 109.47243 * 300.00053 * 7 5 3 10 10 H 1.48499 * 109.46934 * 60.00000 * 7 5 3 11 11 C 1.34782 * 119.99767 * 180.02562 * 2 1 3 12 12 O 1.21289 * 119.99661 * 174.92579 * 11 2 1 13 13 C 1.50704 * 119.99847 * 354.91999 * 11 2 1 14 14 H 1.09000 * 109.36302 * 324.48192 * 13 11 2 15 15 C 1.52665 * 109.36154 * 84.21957 * 13 11 2 16 16 N 1.46148 * 110.89861 * 69.45629 * 15 13 11 17 17 C 1.46504 * 119.51273 * 220.32409 * 16 15 13 18 18 C 1.34681 * 120.97016 * 40.35129 * 16 15 13 19 19 O 1.21551 * 120.33829 * 172.60961 * 18 16 15 20 20 C 1.47827 * 119.32468 * 352.62907 * 18 16 15 21 21 C 1.39234 * 121.10138 * 167.18063 * 20 18 16 22 22 C 1.38058 * 119.66626 * 180.42037 * 21 20 18 23 23 C 1.38390 * 120.14255 * 359.60427 * 22 21 20 24 24 C 1.38412 * 120.40336 * 359.44349 * 23 22 21 25 25 C 1.37831 * 120.00056 * 0.27147 * 24 23 22 26 26 H 1.08997 * 109.47467 * 94.39991 * 1 2 3 27 27 H 1.09002 * 109.47644 * 214.40312 * 1 2 3 28 28 H 1.09001 * 109.47284 * 334.40117 * 1 2 3 29 29 H 0.97002 * 119.99648 * 359.92545 * 6 5 3 30 30 H 1.09000 * 109.18890 * 189.81997 * 15 13 11 31 31 H 1.09000 * 109.19197 * 309.13813 * 15 13 11 32 32 H 1.09001 * 109.46839 * 90.00325 * 17 16 15 33 33 H 1.09007 * 109.46994 * 210.00216 * 17 16 15 34 34 H 1.09000 * 109.47281 * 329.99769 * 17 16 15 35 35 H 1.07998 * 120.16690 * 0.44031 * 21 20 18 36 36 H 1.07999 * 119.93195 * 179.58246 * 22 21 20 37 37 H 1.08001 * 119.79973 * 179.46712 * 23 22 21 38 38 H 1.07995 * 120.00101 * 180.26405 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1843 1.2138 0.3112 5 6 1.5152 2.3563 -0.4003 6 7 0.5335 2.3052 -1.2724 7 14 2.0564 4.0008 0.3013 8 1 1.2260 5.0851 -0.2816 9 1 1.8890 3.9887 1.7769 10 1 3.4841 4.2358 -0.0330 11 6 2.1388 -1.1673 -0.0005 12 8 3.3482 -1.1693 -0.0934 13 6 1.3897 -2.4698 0.1145 14 1 0.5324 -2.3367 0.7744 15 6 0.9028 -2.8974 -1.2679 16 7 2.0248 -3.2946 -2.1160 17 6 2.0359 -2.9039 -3.5279 18 6 3.0484 -4.0149 -1.6187 19 8 3.9074 -4.4531 -2.3588 20 6 3.1165 -4.2675 -0.1638 21 6 3.9924 -5.2137 0.3617 22 6 4.0253 -5.4319 1.7245 23 6 3.1975 -4.7077 2.5644 24 6 2.3392 -3.7521 2.0487 25 6 2.3013 -3.5209 0.6905 26 1 -0.3634 -0.0788 -1.0246 27 1 -0.3634 -0.8479 0.5806 28 1 -0.3634 0.9268 0.4440 29 1 0.2532 1.4514 -1.6375 30 1 0.2181 -3.7389 -1.1621 31 1 0.3777 -2.0649 -1.7361 32 1 2.5307 -1.9385 -3.6339 33 1 2.5740 -3.6537 -4.1081 34 1 1.0113 -2.8291 -3.8923 35 1 4.6430 -5.7739 -0.2935 36 1 4.6982 -6.1696 2.1361 37 1 3.2215 -4.8890 3.6289 38 1 1.6991 -3.1877 2.7105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336107117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:35 Heat of formation + Delta-G solvation = -22.139456 kcal Electronic energy + Delta-G solvation = -23611.805435 eV Core-core repulsion = 20226.886482 eV Total energy + Delta-G solvation = -3384.918953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79940 -38.59593 -38.03237 -35.90380 -35.01064 -32.68676 -31.54796 -31.03283 -29.15989 -27.03075 -26.60478 -24.86738 -23.69628 -22.87651 -21.71441 -19.85512 -18.40157 -17.59266 -17.39193 -16.46111 -16.31739 -15.46338 -15.20953 -14.78738 -14.46859 -14.26536 -14.12400 -13.84113 -13.42598 -13.32813 -13.01041 -12.67567 -12.45976 -12.22150 -12.02760 -11.95001 -11.78284 -11.73300 -11.28702 -11.01364 -10.90613 -10.75901 -10.25319 -10.10463 -9.63817 -9.01835 -8.87658 -8.79434 -8.53828 -8.19125 -7.94077 -6.77105 -3.92171 1.04784 1.48724 3.04512 3.21498 3.23919 3.31087 3.50752 3.67717 3.94562 4.18084 4.58942 4.65832 4.70820 4.83207 5.02301 5.04505 5.13805 5.28064 5.37697 5.43354 5.47171 5.53139 5.69118 5.70646 5.79887 5.85859 5.99652 6.05210 6.10090 6.18295 6.43667 6.47878 6.51347 6.58697 6.62534 7.01790 7.53447 7.76116 8.02248 8.39262 8.51380 8.83858 9.32277 9.77438 10.53433 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.005763 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.401509 B = 4857.212814 C = 5512.835160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.449 5.449 3 C -0.402 4.402 4 H 0.093 0.907 5 C 0.007 3.993 6 N -0.876 5.876 7 Si 1.077 2.923 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.283 1.283 11 C 0.450 3.550 12 O -0.566 6.566 13 C -0.092 4.092 14 H 0.110 0.890 15 C 0.130 3.870 16 N -0.606 5.606 17 C 0.086 3.914 18 C 0.574 3.426 19 O -0.544 6.544 20 C -0.116 4.116 21 C -0.061 4.061 22 C -0.136 4.136 23 C -0.095 4.095 24 C -0.122 4.122 25 C -0.013 4.013 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.275 0.725 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 -11.822 4.268 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.169 5.169 3 C -0.529 4.529 4 H 0.111 0.889 5 C -0.200 4.200 6 N -0.512 5.512 7 Si 0.903 3.097 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.209 1.209 11 C 0.237 3.763 12 O -0.448 6.448 13 C -0.114 4.114 14 H 0.127 0.873 15 C 0.006 3.994 16 N -0.339 5.339 17 C -0.056 4.056 18 C 0.364 3.636 19 O -0.423 6.423 20 C -0.119 4.119 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.113 4.113 24 C -0.140 4.140 25 C -0.015 4.015 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.496 -10.359 3.738 11.555 hybrid contribution 0.084 -1.393 0.090 1.399 sum -3.413 -11.753 3.827 12.823 Atomic orbital electron populations 1.21832 0.82738 1.01982 1.00216 1.43646 1.04403 1.05285 1.63567 1.20420 0.99849 0.84116 1.48496 0.88909 1.26376 0.96469 1.03009 0.94120 1.70854 1.29894 1.29552 1.20910 0.83365 0.76265 0.73968 0.76118 1.20455 1.21008 1.20904 1.19477 0.88133 0.83500 0.85141 1.90576 1.13928 1.86152 1.54193 1.20660 0.98939 0.94410 0.97370 0.87263 1.21293 0.88086 1.00517 0.89503 1.47298 1.21779 1.53883 1.10901 1.21670 1.02126 1.01183 0.80646 1.18065 0.80740 0.76990 0.87769 1.90698 1.39132 1.51856 1.60593 1.19636 0.99686 0.99747 0.92872 1.21088 0.95695 0.95866 0.95331 1.21071 1.00244 1.01002 0.93124 1.21249 0.95092 0.95222 0.99713 1.20898 1.00358 0.98731 0.94024 1.19556 0.94933 0.93473 0.93500 0.93575 0.93493 0.90370 0.91322 0.90958 0.89102 0.92361 0.90363 0.91261 0.84993 0.85585 0.85731 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 7.82 59.85 0.47 1.96 16 2 N -0.45 -10.83 2.95 -122.19 -0.36 -11.19 16 3 C -0.40 -11.04 9.16 -14.93 -0.14 -11.18 16 4 H 0.09 2.78 7.52 -52.49 -0.39 2.38 16 5 C 0.01 0.19 4.64 -17.47 -0.08 0.11 16 6 N -0.88 -23.33 12.68 55.50 0.70 -22.62 16 7 Si 1.08 23.37 30.01 -169.99 -5.10 18.27 16 8 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 9 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.45 10.53 6.56 -10.98 -0.07 10.46 16 12 O -0.57 -15.93 15.84 5.55 0.09 -15.84 16 13 C -0.09 -1.59 2.02 -93.15 -0.19 -1.78 16 14 H 0.11 1.56 6.18 -51.93 -0.32 1.24 16 15 C 0.13 2.00 5.69 -4.40 -0.03 1.97 16 16 N -0.61 -10.86 3.04 -183.21 -0.56 -11.42 16 17 C 0.09 1.36 10.39 59.85 0.62 1.98 16 18 C 0.57 11.56 7.51 -12.38 -0.09 11.47 16 19 O -0.54 -12.05 16.07 5.32 0.09 -11.97 16 20 C -0.12 -2.15 5.65 -105.06 -0.59 -2.74 16 21 C -0.06 -0.97 9.63 -39.28 -0.38 -1.35 16 22 C -0.14 -1.79 10.04 -39.59 -0.40 -2.19 16 23 C -0.09 -1.22 10.04 -39.46 -0.40 -1.61 16 24 C -0.12 -1.81 9.71 -39.67 -0.39 -2.20 16 25 C -0.01 -0.23 4.37 -104.28 -0.46 -0.69 16 26 H 0.05 0.86 6.40 -51.93 -0.33 0.53 16 27 H 0.05 0.71 6.00 -51.93 -0.31 0.40 16 28 H 0.08 1.64 6.89 -51.93 -0.36 1.28 16 29 H 0.27 7.14 5.81 -40.82 -0.24 6.91 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.35 6.88 -51.93 -0.36 0.99 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.21 7.31 -51.92 -0.38 0.83 16 34 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.13 2.00 7.79 -52.49 -0.41 1.59 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -35.20 314.41 -6.94 -42.14 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.43 Total: 3.68 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -2.11 Total: 4.20 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.21 Total: -45.23 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: 0.17 Total: -27.81 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.10 Total: 18.27 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.20 -6.94 -42.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336107117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.001 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds