Wall clock time and date at job start Tue Mar 31 2020 02:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37102 * 120.00294 * 2 1 4 4 H 1.07994 * 119.99764 * 160.56701 * 3 2 1 5 5 C 1.38944 * 119.99827 * 340.56953 * 3 2 1 6 6 N 1.31413 * 120.00341 * 331.20604 * 5 3 2 7 7 Si 1.86800 * 120.00008 * 151.20236 * 5 3 2 8 8 H 1.48495 * 109.47313 * 180.02562 * 7 5 3 9 9 H 1.48508 * 109.47243 * 300.00053 * 7 5 3 10 10 H 1.48499 * 109.46934 * 60.00000 * 7 5 3 11 11 C 1.34782 * 119.99767 * 180.02562 * 2 1 3 12 12 O 1.21289 * 119.99661 * 174.92579 * 11 2 1 13 13 C 1.50704 * 119.99847 * 354.91999 * 11 2 1 14 14 H 1.09000 * 109.36302 * 324.48192 * 13 11 2 15 15 C 1.52665 * 109.36154 * 84.21957 * 13 11 2 16 16 N 1.46148 * 110.89861 * 69.45629 * 15 13 11 17 17 C 1.46504 * 119.51273 * 220.32409 * 16 15 13 18 18 C 1.34681 * 120.97016 * 40.35129 * 16 15 13 19 19 O 1.21551 * 120.33829 * 172.60961 * 18 16 15 20 20 C 1.47827 * 119.32468 * 352.62907 * 18 16 15 21 21 C 1.39234 * 121.10138 * 167.18063 * 20 18 16 22 22 C 1.38058 * 119.66626 * 180.42037 * 21 20 18 23 23 C 1.38390 * 120.14255 * 359.60427 * 22 21 20 24 24 C 1.38412 * 120.40336 * 359.44349 * 23 22 21 25 25 C 1.37831 * 120.00056 * 0.27147 * 24 23 22 26 26 H 1.08997 * 109.47467 * 94.39991 * 1 2 3 27 27 H 1.09002 * 109.47644 * 214.40312 * 1 2 3 28 28 H 1.09001 * 109.47284 * 334.40117 * 1 2 3 29 29 H 0.97002 * 119.99648 * 359.92545 * 6 5 3 30 30 H 1.09000 * 109.18890 * 189.81997 * 15 13 11 31 31 H 1.09000 * 109.19197 * 309.13813 * 15 13 11 32 32 H 1.09001 * 109.46839 * 90.00325 * 17 16 15 33 33 H 1.09007 * 109.46994 * 210.00216 * 17 16 15 34 34 H 1.09000 * 109.47281 * 329.99769 * 17 16 15 35 35 H 1.07998 * 120.16690 * 0.44031 * 21 20 18 36 36 H 1.07999 * 119.93195 * 179.58246 * 22 21 20 37 37 H 1.08001 * 119.79973 * 179.46712 * 23 22 21 38 38 H 1.07995 * 120.00101 * 180.26405 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1843 1.2138 0.3112 5 6 1.5152 2.3563 -0.4003 6 7 0.5335 2.3052 -1.2724 7 14 2.0564 4.0008 0.3013 8 1 1.2260 5.0851 -0.2816 9 1 1.8890 3.9887 1.7769 10 1 3.4841 4.2358 -0.0330 11 6 2.1388 -1.1673 -0.0005 12 8 3.3482 -1.1693 -0.0934 13 6 1.3897 -2.4698 0.1145 14 1 0.5324 -2.3367 0.7744 15 6 0.9028 -2.8974 -1.2679 16 7 2.0248 -3.2946 -2.1160 17 6 2.0359 -2.9039 -3.5279 18 6 3.0484 -4.0149 -1.6187 19 8 3.9074 -4.4531 -2.3588 20 6 3.1165 -4.2675 -0.1638 21 6 3.9924 -5.2137 0.3617 22 6 4.0253 -5.4319 1.7245 23 6 3.1975 -4.7077 2.5644 24 6 2.3392 -3.7521 2.0487 25 6 2.3013 -3.5209 0.6905 26 1 -0.3634 -0.0788 -1.0246 27 1 -0.3634 -0.8479 0.5806 28 1 -0.3634 0.9268 0.4440 29 1 0.2532 1.4514 -1.6375 30 1 0.2181 -3.7389 -1.1621 31 1 0.3777 -2.0649 -1.7361 32 1 2.5307 -1.9385 -3.6339 33 1 2.5740 -3.6537 -4.1081 34 1 1.0113 -2.8291 -3.8923 35 1 4.6430 -5.7739 -0.2935 36 1 4.6982 -6.1696 2.1361 37 1 3.2215 -4.8890 3.6289 38 1 1.6991 -3.1877 2.7105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336107117.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:34 Heat of formation + Delta-G solvation = -45.795374 kcal Electronic energy + Delta-G solvation = -23612.831233 eV Core-core repulsion = 20226.886482 eV Total energy + Delta-G solvation = -3385.944751 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.18009 -40.31753 -39.28961 -37.40500 -36.88730 -34.14391 -33.33600 -32.22496 -30.45493 -28.50285 -28.16923 -26.49687 -25.21568 -24.10110 -23.05273 -21.44984 -19.96132 -19.24793 -18.81406 -17.94461 -17.74652 -17.04056 -16.64850 -16.29464 -15.82935 -15.81227 -15.53687 -15.46031 -14.83551 -14.67587 -14.46718 -14.06083 -13.82705 -13.76477 -13.47675 -13.38997 -13.26297 -13.08577 -12.76378 -12.60449 -12.42955 -12.01404 -11.99014 -11.92078 -11.08000 -10.94138 -10.47611 -10.06664 -9.88421 -9.86178 -9.60918 -8.83467 -6.00931 -0.17553 0.33797 1.48415 1.53666 1.70458 1.81024 1.91585 1.95048 2.35561 2.69804 2.96033 3.05092 3.38908 3.41735 3.64108 3.84266 3.90131 4.12017 4.15087 4.24586 4.28776 4.39919 4.42941 4.47273 4.54138 4.58422 4.66175 4.71669 4.82392 4.91913 4.98721 5.26818 5.37793 5.40104 5.44645 5.75367 5.89565 5.93774 6.16169 6.58712 6.89286 6.94770 7.38648 7.90964 8.47651 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.005763 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.401509 B = 4857.212814 C = 5512.835160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.464 5.464 3 C -0.432 4.432 4 H 0.053 0.947 5 C -0.019 4.019 6 N -0.886 5.886 7 Si 1.119 2.881 8 H -0.271 1.271 9 H -0.266 1.266 10 H -0.285 1.285 11 C 0.447 3.553 12 O -0.625 6.625 13 C -0.080 4.080 14 H 0.148 0.852 15 C 0.124 3.876 16 N -0.611 5.611 17 C 0.085 3.915 18 C 0.558 3.442 19 O -0.585 6.585 20 C -0.148 4.148 21 C -0.079 4.079 22 C -0.127 4.127 23 C -0.085 4.085 24 C -0.128 4.128 25 C -0.036 4.036 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.272 0.728 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -12.814 6.450 15.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.184 5.184 3 C -0.560 4.560 4 H 0.071 0.929 5 C -0.223 4.223 6 N -0.521 5.521 7 Si 0.940 3.060 8 H -0.196 1.196 9 H -0.191 1.191 10 H -0.211 1.211 11 C 0.236 3.764 12 O -0.511 6.511 13 C -0.102 4.102 14 H 0.165 0.835 15 C 0.001 3.999 16 N -0.343 5.343 17 C -0.057 4.057 18 C 0.350 3.650 19 O -0.467 6.467 20 C -0.151 4.151 21 C -0.098 4.098 22 C -0.144 4.144 23 C -0.102 4.102 24 C -0.145 4.145 25 C -0.038 4.038 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.116 0.884 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.146 0.854 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.555 -11.353 5.924 13.959 hybrid contribution 0.753 -1.153 -0.563 1.488 sum -4.802 -12.506 5.361 14.429 Atomic orbital electron populations 1.21950 0.79825 1.03226 1.01366 1.43868 1.06270 1.04665 1.63556 1.20264 0.98994 0.86500 1.50206 0.92910 1.27528 0.95912 1.05408 0.93459 1.70935 1.30326 1.29500 1.21343 0.82850 0.75781 0.70813 0.76582 1.19601 1.19102 1.21136 1.20537 0.87790 0.85221 0.82808 1.90539 1.16923 1.87420 1.56236 1.20655 0.99339 0.90700 0.99507 0.83484 1.21609 0.87699 1.02532 0.88043 1.47527 1.21966 1.52969 1.11792 1.21750 1.04283 0.99415 0.80298 1.18610 0.80718 0.76945 0.88773 1.90646 1.40610 1.53797 1.61642 1.19765 1.01646 1.01682 0.92022 1.21297 0.95582 0.95904 0.96970 1.21511 1.00137 1.01053 0.91747 1.21762 0.93270 0.93472 1.01737 1.21294 1.00897 0.99190 0.93157 1.19669 0.95609 0.93839 0.94652 0.92958 0.88550 0.92148 0.91675 0.86378 0.88424 0.95248 0.90639 0.87216 0.85403 0.81962 0.81572 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.93 7.82 127.77 1.00 3.93 16 2 N -0.46 -22.40 2.95 -658.89 -1.94 -24.34 16 3 C -0.43 -24.40 9.16 84.04 0.77 -23.63 16 4 H 0.05 3.34 7.52 -2.91 -0.02 3.32 16 5 C -0.02 -1.00 4.64 84.92 0.39 -0.61 16 6 N -0.89 -46.99 12.68 21.66 0.27 -46.72 16 7 Si 1.12 47.18 30.01 68.60 2.06 49.24 16 8 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 9 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 10 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 11 C 0.45 20.97 6.56 87.66 0.57 21.55 16 12 O -0.62 -36.55 15.84 -3.06 -0.05 -36.60 16 13 C -0.08 -2.63 2.02 -12.43 -0.03 -2.66 16 14 H 0.15 3.56 6.18 -2.39 -0.01 3.55 16 15 C 0.12 3.53 5.69 86.33 0.49 4.02 16 16 N -0.61 -21.88 3.04 -851.89 -2.59 -24.48 16 17 C 0.08 2.72 10.39 127.77 1.33 4.04 16 18 C 0.56 23.11 7.51 86.80 0.65 23.77 16 19 O -0.58 -27.29 16.07 -3.88 -0.06 -27.35 16 20 C -0.15 -5.47 5.65 -20.15 -0.11 -5.58 16 21 C -0.08 -2.48 9.63 22.47 0.22 -2.26 16 22 C -0.13 -2.97 10.04 22.26 0.22 -2.74 16 23 C -0.08 -1.83 10.04 22.35 0.22 -1.61 16 24 C -0.13 -3.37 9.71 22.21 0.22 -3.16 16 25 C -0.04 -1.21 4.37 -19.64 -0.09 -1.30 16 26 H 0.05 1.86 6.40 -2.39 -0.02 1.85 16 27 H 0.10 2.54 6.00 -2.39 -0.01 2.53 16 28 H 0.06 2.45 6.89 -2.39 -0.02 2.43 16 29 H 0.27 14.10 5.81 -92.71 -0.54 13.56 16 30 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.10 2.64 6.88 -2.39 -0.02 2.63 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 2.43 7.31 -2.38 -0.02 2.41 16 34 H 0.11 2.55 8.06 -2.39 -0.02 2.53 16 35 H 0.13 3.98 7.79 -2.91 -0.02 3.95 16 36 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 38 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -82.62 314.41 4.87 -77.76 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 1.31 Total: 18.73 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 5.86 Total: 13.76 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.26 Total: -95.54 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -0.11 Total: -63.95 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.06 Total: 49.24 kcal Total: -82.62 4.87 -77.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336107117.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.960 kcal (2) G-P(sol) polarization free energy of solvation -82.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds