Wall clock time and date at job start Tue Mar 31 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00124 * 2 1 4 4 O 1.21580 * 120.00268 * 184.17797 * 3 2 1 5 5 C 1.47645 * 120.00011 * 4.18131 * 3 2 1 6 6 C 1.40014 * 119.89285 * 317.76002 * 5 3 2 7 7 C 1.36323 * 120.10344 * 179.71562 * 6 5 3 8 8 C 1.40887 * 119.89265 * 0.55355 * 7 6 5 9 9 C 1.41104 * 120.10584 * 179.73689 * 8 7 6 10 10 H 1.07998 * 120.00370 * 209.42795 * 9 8 7 11 11 C 1.40233 * 119.99445 * 29.42804 * 9 8 7 12 12 N 1.30642 * 120.00152 * 11.30233 * 11 9 8 13 13 Si 1.86805 * 119.99720 * 191.29152 * 11 9 8 14 14 H 1.48501 * 109.46758 * 90.00565 * 13 11 9 15 15 H 1.48500 * 109.46794 * 210.00407 * 13 11 9 16 16 H 1.48500 * 109.46851 * 330.00430 * 13 11 9 17 17 C 1.40890 * 119.79214 * 359.72391 * 8 7 6 18 18 C 1.36316 * 119.89156 * 359.97438 * 17 8 7 19 19 C 1.46501 * 119.99745 * 179.97438 * 2 1 3 20 20 H 1.09003 * 110.43206 * 178.91144 * 19 2 1 21 21 C 1.54628 * 110.48714 * 56.23269 * 19 2 1 22 22 C 1.54479 * 101.76408 * 216.52159 * 21 19 2 23 23 N 1.46761 * 105.47444 * 25.41551 * 22 21 19 24 24 C 1.34413 * 111.30025 * 342.98458 * 23 22 21 25 25 O 1.21286 * 124.94590 * 180.44941 * 24 23 22 26 26 H 1.09004 * 109.47447 * 91.71634 * 1 2 3 27 27 H 1.09001 * 109.47390 * 211.71505 * 1 2 3 28 28 H 1.09003 * 109.47388 * 331.71525 * 1 2 3 29 29 H 1.07995 * 119.94895 * 359.97438 * 6 5 3 30 30 H 1.07998 * 120.05047 * 180.27650 * 7 6 5 31 31 H 0.96999 * 120.00189 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.05337 * 180.02562 * 17 8 7 33 33 H 1.08002 * 119.94552 * 180.02562 * 18 17 8 34 34 H 1.09001 * 110.96813 * 334.64417 * 21 19 2 35 35 H 1.08999 * 110.96791 * 98.39721 * 21 19 2 36 36 H 1.09000 * 110.24328 * 266.40885 * 22 21 19 37 37 H 1.09003 * 110.31648 * 144.45910 * 22 21 19 38 38 H 0.97003 * 124.34645 * 163.00560 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1686 -0.0767 5 6 1.4036 2.4441 0.0932 6 6 0.2273 2.6275 -0.6438 7 6 -0.4581 3.8026 -0.5565 8 6 0.0252 4.8378 0.2680 9 6 -0.6776 6.0580 0.3575 10 1 -0.1443 6.9748 0.5608 11 6 -2.0688 6.0802 0.1823 12 7 -2.7419 4.9608 0.1571 13 14 -2.9595 7.7104 -0.0148 14 1 -3.0220 8.0693 -1.4544 15 1 -4.3373 7.5900 0.5257 16 1 -2.2270 8.7675 0.7276 17 6 1.2125 4.6506 1.0032 18 6 1.8876 3.4698 0.9142 19 6 2.1974 -1.2688 0.0006 20 1 3.2721 -1.0877 -0.0189 21 6 1.7707 -2.1405 -1.2032 22 6 1.8098 -3.5596 -0.5939 23 7 1.6053 -3.3727 0.8473 24 6 1.8217 -2.0966 1.2098 25 8 1.7299 -1.6708 2.3417 26 1 -0.3634 -0.0308 -1.0272 27 1 -0.3634 -0.8742 0.5402 28 1 -0.3634 0.9050 0.4870 29 1 -0.1398 1.8352 -1.2792 30 1 -1.3677 3.9415 -1.1219 31 1 -3.7043 4.9762 0.0363 32 1 1.5866 5.4412 1.6369 33 1 2.7976 3.3252 1.4777 34 1 0.7636 -1.8849 -1.5324 35 1 2.4827 -2.0483 -2.0234 36 1 2.7783 -4.0236 -0.7805 37 1 1.0116 -4.1730 -1.0119 38 1 1.3473 -4.0794 1.4596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340485492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:11 Heat of formation + Delta-G solvation = -41.187299 kcal Electronic energy + Delta-G solvation = -22515.057165 eV Core-core repulsion = 19129.312235 eV Total energy + Delta-G solvation = -3385.744930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73724 -38.95950 -37.10804 -36.40926 -34.86263 -33.80115 -31.05330 -29.76835 -29.50473 -27.65871 -26.44748 -25.45913 -22.36486 -21.82962 -20.98442 -20.29350 -18.87448 -17.50804 -17.45319 -17.01852 -16.08765 -15.74534 -15.45298 -14.74691 -14.56285 -14.13505 -13.87527 -13.69858 -13.42932 -12.98103 -12.83631 -12.68549 -12.53367 -12.22944 -12.11062 -11.83084 -11.77111 -11.31046 -11.26736 -11.23122 -10.92600 -10.59255 -10.07072 -10.01054 -9.49551 -9.37084 -9.30475 -9.03352 -8.30264 -7.65882 -7.46197 -6.92388 -4.56727 2.31624 2.44032 2.95834 2.98896 3.01948 3.02826 3.09093 3.49333 3.65479 3.80730 4.27102 4.42417 4.55561 4.69736 4.81130 5.20443 5.28434 5.42675 5.53135 5.62953 5.63612 5.79013 5.93462 6.14881 6.19186 6.28250 6.58257 6.79046 6.82521 6.84564 6.89361 7.05331 7.14933 7.47860 7.57346 7.79760 7.89225 7.95912 8.11549 8.17531 8.44995 8.69141 8.78155 8.85799 10.00088 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003739 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.741730 B = 7486.097828 C = 7829.097987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.603 5.603 3 C 0.583 3.417 4 O -0.563 6.563 5 C -0.271 4.271 6 C -0.071 4.071 7 C -0.169 4.169 8 C 0.128 3.872 9 C -0.450 4.450 10 H 0.083 0.917 11 C 0.074 3.926 12 N -0.785 5.785 13 Si 0.915 3.085 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.230 4.230 18 C -0.031 4.031 19 C 0.111 3.889 20 H 0.133 0.867 21 C -0.145 4.145 22 C 0.105 3.895 23 N -0.736 5.736 24 C 0.508 3.492 25 O -0.514 6.514 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.284 0.716 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -13.775 -4.559 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.336 5.336 3 C 0.378 3.622 4 O -0.443 6.443 5 C -0.275 4.275 6 C -0.090 4.090 7 C -0.189 4.189 8 C 0.125 3.875 9 C -0.478 4.478 10 H 0.101 0.899 11 C -0.146 4.146 12 N -0.409 5.409 13 Si 0.739 3.261 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.250 4.250 18 C -0.050 4.050 19 C 0.003 3.997 20 H 0.151 0.849 21 C -0.184 4.184 22 C -0.020 4.020 23 N -0.393 5.393 24 C 0.292 3.708 25 O -0.388 6.388 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.331 -13.507 -4.075 14.172 hybrid contribution -0.750 0.116 0.187 0.782 sum 0.582 -13.391 -3.888 13.957 Atomic orbital electron populations 1.22034 0.79189 1.03997 1.01057 1.47490 1.06837 1.03917 1.75379 1.18834 0.86665 0.83511 0.73173 1.90635 1.14579 1.87505 1.51541 1.18780 1.01530 0.94301 1.12882 1.20659 0.93211 0.97327 0.97791 1.21002 1.01535 0.94115 1.02217 1.17781 0.90043 0.92718 0.86983 1.19786 0.91855 0.95038 1.41165 0.89936 1.26024 0.98168 0.98337 0.92044 1.69703 1.09390 1.28237 1.33576 0.86196 0.78561 0.81714 0.79658 1.19103 1.20104 1.18426 1.20742 1.00943 0.97465 1.05828 1.20250 0.96655 0.92453 0.95637 1.21558 1.00761 0.84660 0.92743 0.84923 1.23023 1.04312 0.93052 0.98004 1.22044 1.02128 0.97748 0.80122 1.46155 1.71648 1.11092 1.10451 1.21276 0.75944 0.83188 0.90369 1.90775 1.50644 1.74994 1.22357 0.92736 0.92844 0.88359 0.88493 0.86056 0.90480 0.88321 0.88637 0.89181 0.88567 0.90826 0.90091 0.75227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 7.77 59.85 0.47 1.71 16 2 N -0.60 -10.59 2.85 -175.13 -0.50 -11.09 16 3 C 0.58 12.64 7.30 -12.42 -0.09 12.55 16 4 O -0.56 -13.41 16.31 5.30 0.09 -13.32 16 5 C -0.27 -6.23 5.15 -104.73 -0.54 -6.77 16 6 C -0.07 -1.57 7.42 -39.61 -0.29 -1.86 16 7 C -0.17 -4.13 8.59 -39.27 -0.34 -4.47 16 8 C 0.13 3.27 5.54 -106.80 -0.59 2.68 16 9 C -0.45 -11.32 9.05 -37.75 -0.34 -11.66 16 10 H 0.08 2.00 7.87 -52.49 -0.41 1.58 16 11 C 0.07 1.74 5.24 -17.31 -0.09 1.65 16 12 N -0.78 -18.91 10.90 55.56 0.61 -18.30 16 13 Si 0.91 17.61 29.58 -169.99 -5.03 12.59 16 14 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 15 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 16 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 17 C -0.23 -5.63 9.73 -39.27 -0.38 -6.01 16 18 C -0.03 -0.74 9.58 -39.61 -0.38 -1.11 16 19 C 0.11 1.61 3.34 -67.94 -0.23 1.38 16 20 H 0.13 2.08 6.98 -51.93 -0.36 1.72 16 21 C -0.15 -1.34 6.76 -25.10 -0.17 -1.51 16 22 C 0.10 0.71 7.78 -3.12 -0.02 0.69 16 23 N -0.74 -7.22 6.24 -59.20 -0.37 -7.59 16 24 C 0.51 7.58 7.01 -10.86 -0.08 7.50 16 25 O -0.51 -10.17 18.02 5.55 0.10 -10.06 16 26 H 0.05 0.72 6.99 -51.93 -0.36 0.36 16 27 H 0.05 0.76 7.26 -51.93 -0.38 0.38 16 28 H 0.10 1.80 5.50 -51.93 -0.29 1.52 16 29 H 0.10 1.85 5.79 -52.49 -0.30 1.55 16 30 H 0.12 3.00 6.28 -52.49 -0.33 2.67 16 31 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 32 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 33 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 34 H 0.09 0.81 6.88 -51.93 -0.36 0.46 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.41 3.25 8.96 -40.82 -0.37 2.89 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -31.67 316.85 -7.81 -39.49 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.41 Total: 8.77 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.08 Total: -5.24 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.26 Total: -36.98 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.19 Total: -23.39 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.67 -7.81 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340485492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.698 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds