Wall clock time and date at job start Tue Mar 31 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00124 * 2 1 4 4 O 1.21580 * 120.00268 * 184.17797 * 3 2 1 5 5 C 1.47645 * 120.00011 * 4.18131 * 3 2 1 6 6 C 1.40014 * 119.89285 * 317.76002 * 5 3 2 7 7 C 1.36323 * 120.10344 * 179.71562 * 6 5 3 8 8 C 1.40887 * 119.89265 * 0.55355 * 7 6 5 9 9 C 1.41104 * 120.10584 * 179.73689 * 8 7 6 10 10 H 1.07998 * 120.00370 * 209.42795 * 9 8 7 11 11 C 1.40233 * 119.99445 * 29.42804 * 9 8 7 12 12 N 1.30642 * 120.00152 * 11.30233 * 11 9 8 13 13 Si 1.86805 * 119.99720 * 191.29152 * 11 9 8 14 14 H 1.48501 * 109.46758 * 90.00565 * 13 11 9 15 15 H 1.48500 * 109.46794 * 210.00407 * 13 11 9 16 16 H 1.48500 * 109.46851 * 330.00430 * 13 11 9 17 17 C 1.40890 * 119.79214 * 359.72391 * 8 7 6 18 18 C 1.36316 * 119.89156 * 359.97438 * 17 8 7 19 19 C 1.46501 * 119.99745 * 179.97438 * 2 1 3 20 20 H 1.09003 * 110.43206 * 178.91144 * 19 2 1 21 21 C 1.54628 * 110.48714 * 56.23269 * 19 2 1 22 22 C 1.54479 * 101.76408 * 216.52159 * 21 19 2 23 23 N 1.46761 * 105.47444 * 25.41551 * 22 21 19 24 24 C 1.34413 * 111.30025 * 342.98458 * 23 22 21 25 25 O 1.21286 * 124.94590 * 180.44941 * 24 23 22 26 26 H 1.09004 * 109.47447 * 91.71634 * 1 2 3 27 27 H 1.09001 * 109.47390 * 211.71505 * 1 2 3 28 28 H 1.09003 * 109.47388 * 331.71525 * 1 2 3 29 29 H 1.07995 * 119.94895 * 359.97438 * 6 5 3 30 30 H 1.07998 * 120.05047 * 180.27650 * 7 6 5 31 31 H 0.96999 * 120.00189 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.05337 * 180.02562 * 17 8 7 33 33 H 1.08002 * 119.94552 * 180.02562 * 18 17 8 34 34 H 1.09001 * 110.96813 * 334.64417 * 21 19 2 35 35 H 1.08999 * 110.96791 * 98.39721 * 21 19 2 36 36 H 1.09000 * 110.24328 * 266.40885 * 22 21 19 37 37 H 1.09003 * 110.31648 * 144.45910 * 22 21 19 38 38 H 0.97003 * 124.34645 * 163.00560 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1686 -0.0767 5 6 1.4036 2.4441 0.0932 6 6 0.2273 2.6275 -0.6438 7 6 -0.4581 3.8026 -0.5565 8 6 0.0252 4.8378 0.2680 9 6 -0.6776 6.0580 0.3575 10 1 -0.1443 6.9748 0.5608 11 6 -2.0688 6.0802 0.1823 12 7 -2.7419 4.9608 0.1571 13 14 -2.9595 7.7104 -0.0148 14 1 -3.0220 8.0693 -1.4544 15 1 -4.3373 7.5900 0.5257 16 1 -2.2270 8.7675 0.7276 17 6 1.2125 4.6506 1.0032 18 6 1.8876 3.4698 0.9142 19 6 2.1974 -1.2688 0.0006 20 1 3.2721 -1.0877 -0.0189 21 6 1.7707 -2.1405 -1.2032 22 6 1.8098 -3.5596 -0.5939 23 7 1.6053 -3.3727 0.8473 24 6 1.8217 -2.0966 1.2098 25 8 1.7299 -1.6708 2.3417 26 1 -0.3634 -0.0308 -1.0272 27 1 -0.3634 -0.8742 0.5402 28 1 -0.3634 0.9050 0.4870 29 1 -0.1398 1.8352 -1.2792 30 1 -1.3677 3.9415 -1.1219 31 1 -3.7043 4.9762 0.0363 32 1 1.5866 5.4412 1.6369 33 1 2.7976 3.3252 1.4777 34 1 0.7636 -1.8849 -1.5324 35 1 2.4827 -2.0483 -2.0234 36 1 2.7783 -4.0236 -0.7805 37 1 1.0116 -4.1730 -1.0119 38 1 1.3473 -4.0794 1.4596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340485492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:10 Heat of formation + Delta-G solvation = -63.360876 kcal Electronic energy + Delta-G solvation = -22516.018684 eV Core-core repulsion = 19129.312235 eV Total energy + Delta-G solvation = -3386.706448 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92924 -40.50321 -38.88673 -37.56602 -36.29118 -35.59089 -32.48176 -31.37598 -31.10583 -28.75005 -28.01338 -26.98370 -23.82234 -22.83266 -22.81520 -21.69249 -20.29572 -19.32693 -18.50241 -18.43588 -17.59202 -17.12117 -16.89024 -16.18200 -15.93889 -15.72798 -15.09443 -14.98278 -14.80061 -14.54737 -14.28030 -14.16136 -13.78780 -13.64969 -13.49820 -13.39913 -13.05650 -12.92208 -12.82893 -12.57237 -12.34821 -12.14771 -11.75409 -11.35898 -11.28390 -11.13274 -10.77747 -10.13418 -9.69085 -9.51765 -9.33514 -8.70202 -6.46721 0.52330 1.12485 1.24412 1.40947 1.44130 1.54157 1.84462 2.09847 2.20163 2.42024 2.73202 3.33065 3.53509 3.64786 3.85266 3.98041 4.06985 4.14755 4.36951 4.39003 4.54763 4.59290 4.77486 4.84962 4.93893 4.99783 5.06136 5.10114 5.15489 5.30031 5.42685 5.61666 5.76719 5.78415 5.93655 5.95644 6.00885 6.24608 6.32625 6.57216 6.81737 6.90115 7.14713 7.20761 8.25083 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003739 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.741730 B = 7486.097828 C = 7829.097987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.596 5.596 3 C 0.579 3.421 4 O -0.594 6.594 5 C -0.279 4.279 6 C -0.056 4.056 7 C -0.186 4.186 8 C 0.101 3.899 9 C -0.483 4.483 10 H 0.081 0.919 11 C 0.038 3.962 12 N -0.809 5.809 13 Si 0.988 3.012 14 H -0.259 1.259 15 H -0.266 1.266 16 H -0.261 1.261 17 C -0.245 4.245 18 C -0.045 4.045 19 C 0.098 3.902 20 H 0.115 0.885 21 C -0.134 4.134 22 C 0.106 3.894 23 N -0.714 5.714 24 C 0.502 3.498 25 O -0.577 6.577 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.130 0.870 30 H 0.116 0.884 31 H 0.294 0.706 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -15.839 -6.352 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.328 5.328 3 C 0.372 3.628 4 O -0.476 6.476 5 C -0.283 4.283 6 C -0.075 4.075 7 C -0.206 4.206 8 C 0.098 3.902 9 C -0.511 4.511 10 H 0.099 0.901 11 C -0.180 4.180 12 N -0.433 5.433 13 Si 0.808 3.192 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.185 1.185 17 C -0.265 4.265 18 C -0.064 4.064 19 C -0.009 4.009 20 H 0.133 0.867 21 C -0.172 4.172 22 C -0.017 4.017 23 N -0.370 5.370 24 C 0.286 3.714 25 O -0.456 6.456 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.148 0.852 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.007 -15.674 -5.906 16.750 hybrid contribution -0.301 0.582 0.744 0.991 sum -0.307 -15.092 -5.162 15.954 Atomic orbital electron populations 1.22112 0.77881 1.03279 1.02989 1.47440 1.07704 1.04030 1.73590 1.18636 0.86252 0.84361 0.73523 1.90609 1.15635 1.88114 1.53278 1.19076 1.01805 0.95081 1.12323 1.20870 0.92217 0.97242 0.97132 1.21023 1.01910 0.94911 1.02707 1.18121 0.90662 0.93691 0.87702 1.20029 0.93169 0.94929 1.42996 0.90115 1.26828 0.98153 1.01980 0.91005 1.69728 1.10245 1.30145 1.33214 0.85110 0.77386 0.76921 0.79796 1.18315 1.19002 1.18489 1.20862 1.01254 0.97976 1.06376 1.20409 0.96887 0.92850 0.96260 1.21876 0.99662 0.83888 0.95493 0.86705 1.23080 1.05150 0.92852 0.96162 1.22381 1.05087 0.96717 0.77553 1.46114 1.69083 1.09455 1.12303 1.21373 0.75771 0.84819 0.89435 1.90746 1.53813 1.76483 1.24522 0.89387 0.91228 0.91311 0.85242 0.86599 0.89452 0.87902 0.88565 0.88240 0.86742 0.88336 0.86303 0.73838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 7.77 127.77 0.99 3.33 16 2 N -0.60 -20.45 2.85 -826.26 -2.35 -22.81 16 3 C 0.58 25.34 7.30 86.73 0.63 25.97 16 4 O -0.59 -28.92 16.31 -3.97 -0.06 -28.99 16 5 C -0.28 -13.08 5.15 -19.93 -0.10 -13.19 16 6 C -0.06 -2.48 7.42 22.25 0.17 -2.31 16 7 C -0.19 -9.25 8.59 22.47 0.19 -9.06 16 8 C 0.10 5.36 5.54 -21.28 -0.12 5.24 16 9 C -0.48 -24.98 9.05 23.46 0.21 -24.76 16 10 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 11 C 0.04 1.78 5.24 85.35 0.45 2.23 16 12 N -0.81 -39.07 10.90 21.87 0.24 -38.83 16 13 Si 0.99 35.74 29.58 68.60 2.03 37.77 16 14 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 15 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 16 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 17 C -0.25 -12.53 9.73 22.47 0.22 -12.32 16 18 C -0.04 -2.23 9.58 22.25 0.21 -2.02 16 19 C 0.10 2.70 3.34 44.98 0.15 2.85 16 20 H 0.12 3.59 6.98 -2.39 -0.02 3.57 16 21 C -0.13 -1.94 6.76 31.65 0.21 -1.73 16 22 C 0.11 0.91 7.78 86.83 0.68 1.58 16 23 N -0.71 -11.76 6.24 -459.82 -2.87 -14.63 16 24 C 0.50 14.39 7.01 87.90 0.62 15.01 16 25 O -0.58 -23.18 18.02 -3.05 -0.05 -23.24 16 26 H 0.09 2.02 6.99 -2.38 -0.02 2.00 16 27 H 0.07 1.84 7.26 -2.39 -0.02 1.82 16 28 H 0.07 2.48 5.50 -2.39 -0.01 2.47 16 29 H 0.13 4.74 5.79 -2.91 -0.02 4.72 16 30 H 0.12 5.82 6.28 -2.91 -0.02 5.80 16 31 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 32 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.10 1.31 6.88 -2.39 -0.02 1.29 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.42 5.38 8.96 -92.71 -0.83 4.55 16 Total: -1.00 -73.21 316.85 1.71 -71.50 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.28 Total: 28.39 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 4.51 Total: -9.17 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -4.98 Total: -76.27 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -0.12 Total: -52.22 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -73.21 1.71 -71.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340485492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.140 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds