Wall clock time and date at job start Tue Mar 31 2020 03:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35196 * 126.00226 * 2 1 4 4 C 1.34575 * 107.61721 * 180.02562 * 3 2 1 5 5 C 1.40492 * 108.03578 * 359.89893 * 4 3 2 6 6 N 1.30124 * 108.22658 * 0.13187 * 5 4 3 7 7 C 1.50946 * 123.48151 * 180.31566 * 5 4 3 8 8 C 1.53364 * 108.20755 * 16.61417 * 7 5 4 9 9 C 1.53054 * 109.73766 * 309.33522 * 8 7 5 10 10 C 1.50881 * 128.32222 * 179.86238 * 4 3 2 11 11 H 1.08994 * 109.72055 * 76.84944 * 10 4 3 12 12 C 1.50700 * 109.71862 * 316.23072 * 10 4 3 13 13 O 1.21286 * 120.00467 * 329.34573 * 12 10 4 14 14 N 1.34780 * 119.99659 * 149.33794 * 12 10 4 15 15 C 1.37092 * 120.00202 * 184.74527 * 14 12 10 16 16 H 1.08003 * 119.99726 * 337.88029 * 15 14 12 17 17 C 1.38950 * 120.00563 * 157.87592 * 15 14 12 18 18 N 1.31413 * 119.99276 * 335.74490 * 17 15 14 19 19 Si 1.86794 * 120.00396 * 155.74059 * 17 15 14 20 20 H 1.48499 * 109.46901 * 90.00259 * 19 17 15 21 21 H 1.48503 * 109.47228 * 210.00448 * 19 17 15 22 22 H 1.48504 * 109.47003 * 330.00160 * 19 17 15 23 23 C 1.46506 * 119.99871 * 4.74951 * 14 12 10 24 24 C 1.47197 * 109.46952 * 271.31948 * 23 14 12 25 25 N 6.31136 * 122.56644 * 27.69171 * 2 1 3 26 26 H 1.09007 * 109.47456 * 275.05169 * 1 2 3 27 27 H 1.08998 * 109.47452 * 35.05524 * 1 2 3 28 28 H 1.09000 * 109.47384 * 155.05403 * 1 2 3 29 29 H 1.08004 * 126.18984 * 0.02562 * 3 2 1 30 30 H 1.09006 * 109.71398 * 136.28961 * 7 5 4 31 31 H 1.08998 * 109.71452 * 256.92939 * 7 5 4 32 32 H 1.09000 * 109.43188 * 69.42586 * 8 7 5 33 33 H 1.08998 * 109.43060 * 189.31897 * 8 7 5 34 34 H 1.09004 * 109.44008 * 311.66275 * 9 8 7 35 35 H 1.08992 * 109.42931 * 191.81316 * 9 8 7 36 36 H 0.97008 * 119.99669 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.46875 * 151.32222 * 23 14 12 38 38 H 1.08997 * 109.47421 * 31.31896 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6693 -0.0006 5 6 3.5282 -0.7356 0.0014 6 7 2.2898 -1.1351 0.0003 7 6 4.7821 -1.5760 0.0084 8 6 5.9554 -0.6825 0.4290 9 6 5.9645 0.5919 -0.4185 10 6 4.7979 1.4975 -0.0037 11 1 4.9783 1.8965 0.9944 12 6 4.6595 2.6309 -0.9871 13 8 3.9747 2.4934 -1.9786 14 7 5.2967 3.7976 -0.7648 15 6 5.0942 4.8605 -1.6066 16 1 4.7358 4.6928 -2.6115 17 6 5.3501 6.1536 -1.1670 18 7 5.3174 6.4293 0.1174 19 14 5.7406 7.4998 -2.4017 20 1 4.4810 8.1602 -2.8288 21 1 6.6372 8.5030 -1.7732 22 1 6.4142 6.9063 -3.5846 23 6 6.2057 3.9298 0.3765 24 6 5.4477 4.3698 1.5591 25 7 4.8622 4.7098 2.4718 26 1 -0.3634 0.0905 1.0237 27 1 -0.3634 0.8412 -0.5902 28 1 -0.3634 -0.9318 -0.4334 29 1 1.9294 2.1220 0.0004 30 1 4.6713 -2.3958 0.7182 31 1 4.9629 -1.9749 -0.9897 32 1 5.8505 -0.4175 1.4811 33 1 6.8918 -1.2208 0.2825 34 1 5.8622 0.3282 -1.4712 35 1 6.9054 1.1209 -0.2679 36 1 5.4956 7.3322 0.4244 37 1 6.9759 4.6654 0.1442 38 1 6.6732 2.9669 0.5822 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341512210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:13 Heat of formation + Delta-G solvation = 77.922927 kcal Electronic energy + Delta-G solvation = -23253.730918 eV Core-core repulsion = 19905.443747 eV Total energy + Delta-G solvation = -3348.287172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19414 -38.87745 -36.25855 -35.62516 -34.17633 -32.53886 -31.86104 -31.29407 -28.41149 -27.35707 -26.95381 -25.08772 -23.14021 -21.64173 -20.82337 -19.08040 -18.37575 -17.87876 -16.53834 -16.38098 -16.06519 -15.20970 -14.75193 -14.59676 -14.34417 -14.16131 -13.71858 -13.26107 -12.95306 -12.83624 -12.63398 -12.52100 -12.43724 -12.19522 -11.90783 -11.62712 -11.48587 -11.18808 -11.09196 -10.99243 -10.77585 -10.56716 -10.51381 -10.37058 -10.32907 -10.00366 -9.22285 -8.87857 -8.50377 -7.98262 -7.86348 -6.48305 -3.99438 2.26282 2.77826 3.09948 3.12363 3.22578 3.28001 3.61578 3.85824 4.05650 4.17383 4.56444 4.81351 4.91611 5.00016 5.08284 5.17660 5.24282 5.25501 5.31201 5.46399 5.52266 5.59088 5.71520 5.77715 5.89711 5.94875 6.00502 6.05636 6.12954 6.25010 6.37499 6.42766 6.58410 6.59713 7.00629 7.36274 7.49020 7.97434 8.05384 8.31252 8.87637 9.03440 9.22784 9.79452 10.56519 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.005412 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.441822 B = 5172.195451 C = 5504.626979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.389 5.389 3 C 0.084 3.916 4 C -0.205 4.205 5 C 0.081 3.919 6 N -0.302 5.302 7 C -0.035 4.035 8 C -0.113 4.113 9 C -0.107 4.107 10 C -0.027 4.027 11 H 0.083 0.917 12 C 0.469 3.531 13 O -0.563 6.563 14 N -0.445 5.445 15 C -0.318 4.318 16 H 0.106 0.894 17 C 0.034 3.966 18 N -0.869 5.869 19 Si 0.921 3.079 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.268 1.268 23 C 0.222 3.778 24 C 0.245 3.755 25 N -0.471 5.471 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.169 0.831 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.272 0.728 37 H 0.113 0.887 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.325 -11.238 1.346 11.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.172 5.172 3 C -0.060 4.060 4 C -0.216 4.216 5 C -0.087 4.087 6 N -0.124 5.124 7 C -0.074 4.074 8 C -0.151 4.151 9 C -0.145 4.145 10 C -0.050 4.050 11 H 0.101 0.899 12 C 0.257 3.743 13 O -0.445 6.445 14 N -0.166 5.166 15 C -0.444 4.444 16 H 0.123 0.877 17 C -0.170 4.170 18 N -0.507 5.507 19 Si 0.747 3.253 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.192 1.192 23 C 0.094 3.906 24 C -0.073 4.073 25 N -0.151 5.151 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.186 0.814 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.833 -11.596 2.281 11.848 hybrid contribution 0.622 1.803 -0.794 2.065 sum -0.211 -9.794 1.487 9.908 Atomic orbital electron populations 1.21734 0.74743 1.04186 1.02696 1.48329 1.06076 1.03474 1.59317 1.21971 0.90841 0.93032 1.00115 1.19415 0.93643 0.92927 1.15645 1.22216 0.93231 0.93658 0.99586 1.76876 1.01170 1.08307 1.26030 1.20087 0.88716 0.96191 1.02417 1.21571 0.97312 0.95908 1.00351 1.21550 0.96978 0.95195 1.00821 1.19731 0.92517 0.93722 0.99058 0.89875 1.20078 0.81902 0.84108 0.88191 1.90538 1.41789 1.82212 1.29921 1.43618 1.38423 1.10919 1.23657 1.19594 1.45598 0.83587 0.95670 0.87675 1.25268 0.97150 0.98268 0.96328 1.69785 1.45614 1.21694 1.13624 0.86019 0.78669 0.80030 0.80555 1.20489 1.20814 1.19228 1.18666 0.91152 1.00510 0.80250 1.29100 0.94060 0.91141 0.93025 1.80866 1.08359 1.11043 1.14853 0.91312 0.89835 0.89605 0.81367 0.90406 0.90030 0.91411 0.90889 0.90903 0.90968 0.91676 0.86897 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.24 11.47 59.85 0.69 1.93 16 2 N -0.39 -6.49 4.02 -68.29 -0.27 -6.77 16 3 C 0.08 1.57 10.58 -17.37 -0.18 1.38 16 4 C -0.20 -3.79 5.04 -104.98 -0.53 -4.32 16 5 C 0.08 1.37 7.10 -82.35 -0.58 0.79 16 6 N -0.30 -5.33 12.56 33.75 0.42 -4.91 16 7 C -0.03 -0.44 6.31 -27.57 -0.17 -0.62 16 8 C -0.11 -1.29 5.86 -26.51 -0.16 -1.44 16 9 C -0.11 -1.51 5.06 -26.50 -0.13 -1.65 16 10 C -0.03 -0.49 2.02 -92.63 -0.19 -0.68 16 11 H 0.08 1.45 6.13 -51.93 -0.32 1.13 16 12 C 0.47 10.40 6.42 -10.98 -0.07 10.33 16 13 O -0.56 -14.53 15.65 5.55 0.09 -14.44 16 14 N -0.45 -10.10 2.58 -117.93 -0.30 -10.40 16 15 C -0.32 -8.03 9.23 -14.94 -0.14 -8.17 16 16 H 0.11 2.83 7.45 -52.48 -0.39 2.43 16 17 C 0.03 0.83 4.78 -17.47 -0.08 0.75 16 18 N -0.87 -21.94 9.58 55.50 0.53 -21.41 16 19 Si 0.92 19.42 29.62 -169.99 -5.03 14.39 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C 0.22 4.25 4.80 -6.83 -0.03 4.22 16 24 C 0.25 5.34 12.09 -20.75 -0.25 5.09 16 25 N -0.47 -11.15 18.54 42.17 0.78 -10.36 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.17 3.15 8.06 -52.48 -0.42 2.72 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.07 0.87 7.03 -51.93 -0.37 0.50 16 36 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.11 2.15 7.15 -51.93 -0.37 1.78 16 38 H 0.09 1.28 5.65 -51.93 -0.29 0.99 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -33.01 319.42 -5.49 -38.50 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.67 Total: 2.98 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -1.84 Total: 7.62 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 1.16 Total: -53.85 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.01 -5.49 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341512210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.419 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds