Wall clock time and date at job start Tue Mar 31 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35196 * 126.00226 * 2 1 4 4 C 1.34575 * 107.61721 * 180.02562 * 3 2 1 5 5 C 1.40492 * 108.03578 * 359.89893 * 4 3 2 6 6 N 1.30124 * 108.22658 * 0.13187 * 5 4 3 7 7 C 1.50946 * 123.48151 * 180.31566 * 5 4 3 8 8 C 1.53364 * 108.20755 * 16.61417 * 7 5 4 9 9 C 1.53054 * 109.73766 * 309.33522 * 8 7 5 10 10 C 1.50881 * 128.32222 * 179.86238 * 4 3 2 11 11 H 1.08994 * 109.72055 * 76.84944 * 10 4 3 12 12 C 1.50700 * 109.71862 * 316.23072 * 10 4 3 13 13 O 1.21286 * 120.00467 * 329.34573 * 12 10 4 14 14 N 1.34780 * 119.99659 * 149.33794 * 12 10 4 15 15 C 1.37092 * 120.00202 * 184.74527 * 14 12 10 16 16 H 1.08003 * 119.99726 * 337.88029 * 15 14 12 17 17 C 1.38950 * 120.00563 * 157.87592 * 15 14 12 18 18 N 1.31413 * 119.99276 * 335.74490 * 17 15 14 19 19 Si 1.86794 * 120.00396 * 155.74059 * 17 15 14 20 20 H 1.48499 * 109.46901 * 90.00259 * 19 17 15 21 21 H 1.48503 * 109.47228 * 210.00448 * 19 17 15 22 22 H 1.48504 * 109.47003 * 330.00160 * 19 17 15 23 23 C 1.46506 * 119.99871 * 4.74951 * 14 12 10 24 24 C 1.47197 * 109.46952 * 271.31948 * 23 14 12 25 25 N 6.31136 * 122.56644 * 27.69171 * 2 1 3 26 26 H 1.09007 * 109.47456 * 275.05169 * 1 2 3 27 27 H 1.08998 * 109.47452 * 35.05524 * 1 2 3 28 28 H 1.09000 * 109.47384 * 155.05403 * 1 2 3 29 29 H 1.08004 * 126.18984 * 0.02562 * 3 2 1 30 30 H 1.09006 * 109.71398 * 136.28961 * 7 5 4 31 31 H 1.08998 * 109.71452 * 256.92939 * 7 5 4 32 32 H 1.09000 * 109.43188 * 69.42586 * 8 7 5 33 33 H 1.08998 * 109.43060 * 189.31897 * 8 7 5 34 34 H 1.09004 * 109.44008 * 311.66275 * 9 8 7 35 35 H 1.08992 * 109.42931 * 191.81316 * 9 8 7 36 36 H 0.97008 * 119.99669 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.46875 * 151.32222 * 23 14 12 38 38 H 1.08997 * 109.47421 * 31.31896 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.0937 0.0000 4 6 3.5367 0.6693 -0.0006 5 6 3.5282 -0.7356 0.0014 6 7 2.2898 -1.1351 0.0003 7 6 4.7821 -1.5760 0.0084 8 6 5.9554 -0.6825 0.4290 9 6 5.9645 0.5919 -0.4185 10 6 4.7979 1.4975 -0.0037 11 1 4.9783 1.8965 0.9944 12 6 4.6595 2.6309 -0.9871 13 8 3.9747 2.4934 -1.9786 14 7 5.2967 3.7976 -0.7648 15 6 5.0942 4.8605 -1.6066 16 1 4.7358 4.6928 -2.6115 17 6 5.3501 6.1536 -1.1670 18 7 5.3174 6.4293 0.1174 19 14 5.7406 7.4998 -2.4017 20 1 4.4810 8.1602 -2.8288 21 1 6.6372 8.5030 -1.7732 22 1 6.4142 6.9063 -3.5846 23 6 6.2057 3.9298 0.3765 24 6 5.4477 4.3698 1.5591 25 7 4.8622 4.7098 2.4718 26 1 -0.3634 0.0905 1.0237 27 1 -0.3634 0.8412 -0.5902 28 1 -0.3634 -0.9318 -0.4334 29 1 1.9294 2.1220 0.0004 30 1 4.6713 -2.3958 0.7182 31 1 4.9629 -1.9749 -0.9897 32 1 5.8505 -0.4175 1.4811 33 1 6.8918 -1.2208 0.2825 34 1 5.8622 0.3282 -1.4712 35 1 6.9054 1.1209 -0.2679 36 1 5.4956 7.3322 0.4244 37 1 6.9759 4.6654 0.1442 38 1 6.6732 2.9669 0.5822 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341512210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:12 Heat of formation + Delta-G solvation = 57.119930 kcal Electronic energy + Delta-G solvation = -23254.633004 eV Core-core repulsion = 19905.443747 eV Total energy + Delta-G solvation = -3349.189257 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.49864 -40.54521 -37.63713 -37.22592 -35.99302 -33.97806 -33.40477 -32.58673 -29.75243 -29.00982 -28.06100 -26.78252 -24.46455 -22.74495 -22.23103 -20.61157 -19.73057 -19.58374 -18.18418 -17.96967 -17.44389 -16.60166 -16.23323 -16.07245 -15.61998 -15.42475 -15.27572 -14.66198 -14.57615 -14.31823 -13.92402 -13.75088 -13.65443 -13.56881 -13.28929 -13.23033 -13.07123 -12.84028 -12.59027 -12.32969 -12.23773 -12.07763 -12.01285 -11.85970 -11.57246 -11.23418 -11.07954 -10.25399 -10.15031 -9.83459 -9.21960 -8.37431 -5.94485 0.92328 1.39170 1.48968 1.59923 1.62393 1.78561 1.91449 2.15247 2.33208 2.42982 3.02102 3.21890 3.43520 3.65366 3.84417 3.98931 4.03731 4.16451 4.27417 4.37145 4.40261 4.44286 4.57438 4.59293 4.62099 4.76932 4.79281 4.82709 5.03304 5.09965 5.23158 5.29619 5.39344 5.51473 5.55775 5.77956 6.08554 6.12721 6.45415 6.75568 7.14699 7.17873 7.40608 8.00284 8.64923 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.005412 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.441822 B = 5172.195451 C = 5504.626979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.391 5.391 3 C 0.061 3.939 4 C -0.227 4.227 5 C 0.078 3.922 6 N -0.319 5.319 7 C -0.037 4.037 8 C -0.104 4.104 9 C -0.106 4.106 10 C -0.020 4.020 11 H 0.088 0.912 12 C 0.467 3.533 13 O -0.609 6.609 14 N -0.456 5.456 15 C -0.341 4.341 16 H 0.079 0.921 17 C 0.008 3.992 18 N -0.887 5.887 19 Si 0.980 3.020 20 H -0.289 1.289 21 H -0.272 1.272 22 H -0.263 1.263 23 C 0.222 3.778 24 C 0.257 3.743 25 N -0.508 5.508 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.155 0.845 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.272 0.728 37 H 0.117 0.883 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 -12.562 1.816 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.174 5.174 3 C -0.084 4.084 4 C -0.239 4.239 5 C -0.090 4.090 6 N -0.141 5.141 7 C -0.076 4.076 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.042 4.042 11 H 0.106 0.894 12 C 0.257 3.743 13 O -0.493 6.493 14 N -0.176 5.176 15 C -0.468 4.468 16 H 0.097 0.903 17 C -0.195 4.195 18 N -0.525 5.525 19 Si 0.805 3.195 20 H -0.215 1.215 21 H -0.197 1.197 22 H -0.187 1.187 23 C 0.095 3.905 24 C -0.060 4.060 25 N -0.190 5.190 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.172 0.828 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.794 -12.932 2.771 13.249 hybrid contribution 0.001 2.209 -0.972 2.414 sum 0.795 -10.723 1.799 10.902 Atomic orbital electron populations 1.22092 0.72333 1.05483 1.04327 1.48703 1.07539 1.02641 1.58487 1.21983 0.91922 0.93130 1.01364 1.19721 0.93745 0.94164 1.16289 1.22882 0.94332 0.93407 0.98415 1.76824 1.01783 1.08845 1.26601 1.20338 0.87124 0.96463 1.03674 1.21581 0.98431 0.94360 0.99823 1.21627 0.96140 0.96172 1.00469 1.19719 0.94194 0.92659 0.97646 0.89381 1.20883 0.80492 0.84828 0.88070 1.90502 1.43526 1.83172 1.32086 1.43766 1.39192 1.10468 1.24191 1.19486 1.46896 0.85033 0.95410 0.90318 1.25858 0.96390 0.99506 0.97712 1.69869 1.45918 1.21997 1.14733 0.85133 0.77981 0.77607 0.78774 1.21521 1.19728 1.18739 1.19051 0.90112 1.03302 0.78053 1.29603 0.93375 0.90098 0.92930 1.80865 1.09421 1.12411 1.16266 0.89442 0.88840 0.88097 0.82780 0.88304 0.89111 0.90849 0.87037 0.92423 0.88403 0.91764 0.86560 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.19 11.47 127.77 1.47 3.66 16 2 N -0.39 -13.04 4.02 -369.97 -1.49 -14.53 16 3 C 0.06 2.33 10.58 83.34 0.88 3.21 16 4 C -0.23 -8.38 5.04 -20.10 -0.10 -8.48 16 5 C 0.08 2.52 7.10 43.44 0.31 2.83 16 6 N -0.32 -10.97 12.56 -47.14 -0.59 -11.57 16 7 C -0.04 -0.82 6.31 30.05 0.19 -0.63 16 8 C -0.10 -1.94 5.86 30.73 0.18 -1.76 16 9 C -0.11 -2.70 5.06 30.74 0.16 -2.54 16 10 C -0.02 -0.68 2.02 -12.10 -0.02 -0.70 16 11 H 0.09 2.93 6.13 -2.39 -0.01 2.92 16 12 C 0.47 20.90 6.42 87.66 0.56 21.46 16 13 O -0.61 -32.47 15.65 -3.05 -0.05 -32.51 16 14 N -0.46 -20.69 2.58 -645.41 -1.66 -22.36 16 15 C -0.34 -17.52 9.23 84.04 0.78 -16.74 16 16 H 0.08 4.40 7.45 -2.91 -0.02 4.38 16 17 C 0.01 0.38 4.78 84.93 0.41 0.79 16 18 N -0.89 -44.60 9.58 21.66 0.21 -44.39 16 19 Si 0.98 39.84 29.62 68.60 2.03 41.87 16 20 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 C 0.22 8.17 4.80 84.57 0.41 8.57 16 24 C 0.26 11.03 12.09 89.44 1.08 12.12 16 25 N -0.51 -23.98 18.54 20.01 0.37 -23.61 16 26 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.15 6.14 8.06 -2.91 -0.02 6.12 16 30 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 35 H 0.10 1.95 7.03 -2.39 -0.02 1.94 16 36 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 37 H 0.12 4.26 7.15 -2.39 -0.02 4.24 16 38 H 0.14 3.62 5.65 -2.39 -0.01 3.60 16 Total: -1.00 -73.51 319.42 6.19 -67.32 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 1.09 Total: 17.99 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 6.29 Total: 21.78 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -3.17 Total: -116.45 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.05 Total: -32.51 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -73.51 6.19 -67.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341512210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.439 kcal (2) G-P(sol) polarization free energy of solvation -73.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds