Wall clock time and date at job start Tue Mar 31 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47145 * 120.00172 * 2 1 3 5 5 C 1.46893 * 110.99924 * 274.99722 * 4 2 1 6 6 C 1.50706 * 109.47176 * 179.97438 * 5 4 2 7 7 O 1.21295 * 119.99584 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.37095 * 119.99737 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00254 * 0.02562 * 9 8 6 11 11 C 1.38949 * 119.99943 * 179.97438 * 9 8 6 12 12 N 1.31413 * 120.00099 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47026 * 90.00208 * 13 11 9 15 15 H 1.48496 * 109.47474 * 210.00244 * 13 11 9 16 16 H 1.48504 * 109.47117 * 330.00775 * 13 11 9 17 17 C 1.50708 * 109.47150 * 240.00235 * 2 1 3 18 18 C 1.39684 * 119.13402 * 279.72621 * 17 2 1 19 19 C 1.35637 * 121.81418 * 179.72136 * 18 17 2 20 20 C 1.41163 * 119.59011 * 0.56659 * 19 18 17 21 21 N 1.32058 * 134.66986 * 179.72724 * 20 19 18 22 22 N 1.39960 * 108.95214 * 179.97438 * 21 20 19 23 23 H 0.97003 * 125.01428 * 179.97438 * 22 21 20 24 24 C 1.33984 * 109.95906 * 0.02562 * 22 21 20 25 25 C 1.38241 * 107.90820 * 359.97438 * 24 22 21 26 26 C 1.35653 * 119.13529 * 99.99811 * 17 2 1 27 27 H 1.08994 * 109.47047 * 59.99813 * 1 2 3 28 28 H 1.09008 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46853 * 299.99754 * 1 2 3 30 30 H 1.00904 * 110.99923 * 151.04804 * 4 2 1 31 31 H 1.09001 * 109.46739 * 60.00281 * 5 4 2 32 32 H 1.09000 * 109.47767 * 300.00540 * 5 4 2 33 33 H 0.96994 * 119.99756 * 0.02562 * 8 6 5 34 34 H 0.96999 * 120.00288 * 179.97438 * 12 11 9 35 35 H 1.08003 * 119.09270 * 0.02562 * 18 17 2 36 36 H 1.07996 * 120.20307 * 180.24543 * 19 18 17 37 37 H 1.08001 * 126.04229 * 180.02562 * 24 22 21 38 38 H 1.07998 * 120.23236 * 359.97438 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5220 3.5560 7 8 2.8677 -1.6989 3.4701 8 7 2.7274 0.1201 4.7327 9 6 3.1872 -0.5571 5.8325 10 1 3.4376 -1.6049 5.7559 11 6 3.3320 0.1049 7.0456 12 7 3.0278 1.3800 7.1387 13 14 3.9578 -0.8178 8.5444 14 1 5.4388 -0.7246 8.6002 15 1 3.3775 -0.2184 9.7728 16 1 3.5548 -2.2441 8.4515 17 6 2.0324 -0.7104 -1.2306 18 6 2.0647 -2.1068 -1.2441 19 6 2.5010 -2.8015 -2.3243 20 6 2.9481 -2.1042 -3.4674 21 7 3.4247 -2.4622 -4.6458 22 7 3.7054 -1.3113 -5.3912 23 1 4.0658 -1.3057 -6.2918 24 6 3.4037 -0.2188 -4.6768 25 6 2.9192 -0.6333 -3.4502 26 6 2.4465 0.0232 -2.2938 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.9174 -1.1205 1.0287 31 1 1.0871 0.6162 2.5525 32 1 2.7588 1.0462 2.1182 33 1 2.5028 1.0612 4.8014 34 1 3.1285 1.8420 7.9856 35 1 1.7285 -2.6483 -0.3722 36 1 2.5112 -3.8813 -2.3079 37 1 3.5179 0.8047 -5.0021 38 1 2.4148 1.1020 -2.2557 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353321212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:23 Heat of formation + Delta-G solvation = 57.365504 kcal Electronic energy + Delta-G solvation = -21447.463642 eV Core-core repulsion = 18098.285033 eV Total energy + Delta-G solvation = -3349.178609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40510 -38.70792 -37.82813 -35.35554 -33.84239 -32.34230 -31.23792 -30.85281 -30.27139 -28.22713 -26.49877 -24.58616 -23.71950 -22.56126 -20.85535 -20.18946 -19.22571 -18.28963 -17.85740 -16.85088 -16.41250 -15.43099 -15.30227 -15.05679 -14.64938 -14.43064 -14.00462 -13.97155 -13.50754 -13.44048 -13.37440 -12.90169 -12.42552 -11.97967 -11.80185 -11.67568 -11.57084 -11.41500 -11.26357 -11.03917 -10.83562 -10.39972 -10.37082 -10.36193 -10.17988 -9.46932 -8.83130 -8.39634 -8.01367 -7.91479 -7.69801 -6.38040 -3.78554 0.48696 1.72515 2.29278 2.48571 3.20698 3.29076 3.35380 3.75501 3.96250 4.05211 4.18645 4.42811 4.45211 4.81660 4.92778 5.07553 5.18792 5.23207 5.29299 5.43184 5.55231 5.58425 5.68457 5.81617 5.91152 6.01210 6.03607 6.11500 6.30656 6.34283 6.39602 6.44948 6.65560 6.81492 6.85156 7.33019 7.42013 7.58935 7.75304 8.10761 8.65791 9.22062 9.58967 10.10699 10.79859 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.002745 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.214703 B =10196.061524 C =10457.925464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.126 3.874 3 H 0.048 0.952 4 N -0.662 5.662 5 C 0.050 3.950 6 C 0.442 3.558 7 O -0.582 6.582 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.103 0.897 11 C 0.021 3.979 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.269 1.269 17 C -0.111 4.111 18 C -0.050 4.050 19 C -0.113 4.113 20 C 0.107 3.893 21 N -0.312 5.312 22 N -0.431 5.431 23 H 0.442 0.558 24 C 0.077 3.923 25 C -0.204 4.204 26 C -0.045 4.045 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.352 0.648 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.392 0.608 34 H 0.271 0.729 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.186 0.814 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 2.445 -22.858 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 H 0.066 0.934 4 N -0.295 5.295 5 C -0.083 4.083 6 C 0.228 3.772 7 O -0.466 6.466 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.121 0.879 11 C -0.180 4.180 12 N -0.545 5.545 13 Si 0.757 3.243 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.194 1.194 17 C -0.113 4.113 18 C -0.072 4.072 19 C -0.134 4.134 20 C -0.046 4.046 21 N -0.141 5.141 22 N -0.131 5.131 23 H 0.285 0.715 24 C -0.080 4.080 25 C -0.214 4.214 26 C -0.066 4.066 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.172 0.828 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.159 0.841 36 H 0.147 0.853 37 H 0.203 0.797 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.000 0.494 -23.333 23.423 hybrid contribution 0.976 1.592 0.582 1.956 sum -1.024 2.086 -22.751 22.869 Atomic orbital electron populations 1.21789 0.93877 1.02675 1.00970 1.20446 0.96010 0.94928 0.87013 0.93378 1.60228 1.34917 1.31919 1.02469 1.21726 1.01276 0.93953 0.91301 1.19826 0.84778 0.88200 0.84419 1.90524 1.55180 1.16139 1.84762 1.41862 1.57920 1.12445 1.07988 1.19703 1.39758 0.96443 0.86814 0.87937 1.25252 0.97748 0.95785 0.99220 1.69612 1.48829 1.08886 1.27144 0.85866 0.78740 0.79542 0.80195 1.20473 1.20959 1.19397 1.19387 1.02282 0.93908 0.95748 1.20743 0.95244 0.93592 0.97643 1.19922 1.03379 0.99500 0.90601 1.21037 0.97455 0.92974 0.93166 1.77673 1.26874 1.03970 1.05534 1.46291 1.46910 1.04044 1.15830 0.71462 1.22651 0.99650 0.93365 0.92284 1.19582 1.12070 0.93617 0.96084 1.20057 0.96853 0.98863 0.90845 0.92886 0.91742 0.92368 0.82804 0.89544 0.93884 0.77484 0.91932 0.84051 0.85348 0.79688 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.39 37.16 0.35 -1.23 16 2 C 0.13 1.59 2.78 -68.86 -0.19 1.39 16 3 H 0.05 0.57 7.58 -51.93 -0.39 0.17 16 4 N -0.66 -10.65 5.24 -109.22 -0.57 -11.22 16 5 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 6 C 0.44 10.48 7.82 -10.98 -0.09 10.39 16 7 O -0.58 -15.86 15.78 5.54 0.09 -15.77 16 8 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 9 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 10 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 11 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 13 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C -0.11 -1.36 4.68 -105.00 -0.49 -1.85 16 18 C -0.05 -0.64 8.82 -39.97 -0.35 -0.99 16 19 C -0.11 -1.44 10.08 -39.40 -0.40 -1.84 16 20 C 0.11 1.41 7.49 -83.05 -0.62 0.79 16 21 N -0.31 -3.91 12.70 33.26 0.42 -3.48 16 22 N -0.43 -3.47 7.18 30.84 0.22 -3.24 16 23 H 0.44 1.76 8.96 -182.70 -1.64 0.12 16 24 C 0.08 0.59 12.07 -16.61 -0.20 0.39 16 25 C -0.20 -2.26 6.33 -105.19 -0.67 -2.93 16 26 C -0.05 -0.49 9.65 -39.41 -0.38 -0.87 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.06 0.69 7.45 -51.93 -0.39 0.31 16 30 H 0.35 6.02 7.66 -39.29 -0.30 5.72 16 31 H 0.09 1.40 7.44 -51.93 -0.39 1.02 16 32 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 33 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.14 1.87 7.62 -52.48 -0.40 1.47 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.19 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.12 1.04 7.97 -52.49 -0.42 0.62 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -34.21 328.90 -8.42 -42.63 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -5.87 Total: 12.32 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -3.31 Total: -3.93 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.74 Total: -56.41 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.09 Total: -15.77 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.21 -8.42 -42.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353321212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.997 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds