Wall clock time and date at job start Tue Mar 31 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47145 * 120.00172 * 2 1 3 5 5 C 1.46893 * 110.99924 * 274.99722 * 4 2 1 6 6 C 1.50706 * 109.47176 * 179.97438 * 5 4 2 7 7 O 1.21295 * 119.99584 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.37095 * 119.99737 * 180.02562 * 8 6 5 10 10 H 1.08004 * 120.00254 * 0.02562 * 9 8 6 11 11 C 1.38949 * 119.99943 * 179.97438 * 9 8 6 12 12 N 1.31413 * 120.00099 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47026 * 90.00208 * 13 11 9 15 15 H 1.48496 * 109.47474 * 210.00244 * 13 11 9 16 16 H 1.48504 * 109.47117 * 330.00775 * 13 11 9 17 17 C 1.50708 * 109.47150 * 240.00235 * 2 1 3 18 18 C 1.39684 * 119.13402 * 279.72621 * 17 2 1 19 19 C 1.35637 * 121.81418 * 179.72136 * 18 17 2 20 20 C 1.41163 * 119.59011 * 0.56659 * 19 18 17 21 21 N 1.32058 * 134.66986 * 179.72724 * 20 19 18 22 22 N 1.39960 * 108.95214 * 179.97438 * 21 20 19 23 23 H 0.97003 * 125.01428 * 179.97438 * 22 21 20 24 24 C 1.33984 * 109.95906 * 0.02562 * 22 21 20 25 25 C 1.38241 * 107.90820 * 359.97438 * 24 22 21 26 26 C 1.35653 * 119.13529 * 99.99811 * 17 2 1 27 27 H 1.08994 * 109.47047 * 59.99813 * 1 2 3 28 28 H 1.09008 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46853 * 299.99754 * 1 2 3 30 30 H 1.00904 * 110.99923 * 151.04804 * 4 2 1 31 31 H 1.09001 * 109.46739 * 60.00281 * 5 4 2 32 32 H 1.09000 * 109.47767 * 300.00540 * 5 4 2 33 33 H 0.96994 * 119.99756 * 0.02562 * 8 6 5 34 34 H 0.96999 * 120.00288 * 179.97438 * 12 11 9 35 35 H 1.08003 * 119.09270 * 0.02562 * 18 17 2 36 36 H 1.07996 * 120.20307 * 180.24543 * 19 18 17 37 37 H 1.08001 * 126.04229 * 180.02562 * 24 22 21 38 38 H 1.07998 * 120.23236 * 359.97438 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5220 3.5560 7 8 2.8677 -1.6989 3.4701 8 7 2.7274 0.1201 4.7327 9 6 3.1872 -0.5571 5.8325 10 1 3.4376 -1.6049 5.7559 11 6 3.3320 0.1049 7.0456 12 7 3.0278 1.3800 7.1387 13 14 3.9578 -0.8178 8.5444 14 1 5.4388 -0.7246 8.6002 15 1 3.3775 -0.2184 9.7728 16 1 3.5548 -2.2441 8.4515 17 6 2.0324 -0.7104 -1.2306 18 6 2.0647 -2.1068 -1.2441 19 6 2.5010 -2.8015 -2.3243 20 6 2.9481 -2.1042 -3.4674 21 7 3.4247 -2.4622 -4.6458 22 7 3.7054 -1.3113 -5.3912 23 1 4.0658 -1.3057 -6.2918 24 6 3.4037 -0.2188 -4.6768 25 6 2.9192 -0.6333 -3.4502 26 6 2.4465 0.0232 -2.2938 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 2.9174 -1.1205 1.0287 31 1 1.0871 0.6162 2.5525 32 1 2.7588 1.0462 2.1182 33 1 2.5028 1.0612 4.8014 34 1 3.1285 1.8420 7.9856 35 1 1.7285 -2.6483 -0.3722 36 1 2.5112 -3.8813 -2.3079 37 1 3.5179 0.8047 -5.0021 38 1 2.4148 1.1020 -2.2557 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353321212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:23 Heat of formation + Delta-G solvation = 31.789219 kcal Electronic energy + Delta-G solvation = -21448.572713 eV Core-core repulsion = 18098.285033 eV Total energy + Delta-G solvation = -3350.287679 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17141 -40.21903 -39.13181 -36.52751 -35.80855 -33.34918 -33.13704 -31.86605 -31.21309 -29.07307 -28.07838 -26.07704 -24.85481 -23.52692 -21.67483 -21.09206 -21.03478 -19.88758 -19.00045 -18.06590 -17.47412 -17.03691 -16.47081 -16.25451 -15.93737 -15.80773 -15.58946 -15.03188 -14.69975 -14.61161 -14.47125 -14.00046 -13.76570 -13.48677 -13.23716 -13.03888 -12.83676 -12.58950 -12.43081 -12.38721 -12.24328 -12.10412 -11.81197 -11.48202 -11.21879 -11.19764 -10.30145 -9.98511 -9.66680 -9.25801 -8.52375 -8.44265 -5.92668 -0.27359 0.84548 1.39379 1.42907 1.51462 1.55782 1.91011 2.09297 2.31192 2.84101 3.02850 3.23198 3.34315 3.59174 3.79612 3.91080 4.22152 4.32091 4.36105 4.44382 4.51801 4.60316 4.66539 4.67938 4.70562 4.75863 5.00144 5.09889 5.25418 5.43268 5.47382 5.50945 5.52325 5.71466 5.95821 5.99354 6.23383 6.32086 6.48052 6.62913 6.63882 7.15677 7.59969 8.15821 8.73171 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.002745 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.214703 B =10196.061524 C =10457.925464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.132 3.868 3 H 0.067 0.933 4 N -0.676 5.676 5 C 0.065 3.935 6 C 0.439 3.561 7 O -0.623 6.623 8 N -0.574 5.574 9 C -0.332 4.332 10 H 0.077 0.923 11 C -0.013 4.013 12 N -0.921 5.921 13 Si 0.992 3.008 14 H -0.271 1.271 15 H -0.270 1.270 16 H -0.274 1.274 17 C -0.139 4.139 18 C -0.051 4.051 19 C -0.137 4.137 20 C 0.084 3.916 21 N -0.358 5.358 22 N -0.416 5.416 23 H 0.459 0.541 24 C 0.119 3.881 25 C -0.238 4.238 26 C -0.022 4.022 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.343 0.657 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.277 0.723 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.243 0.757 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.633 5.067 -24.469 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.024 3.976 3 H 0.085 0.915 4 N -0.309 5.309 5 C -0.067 4.067 6 C 0.226 3.774 7 O -0.510 6.510 8 N -0.212 5.212 9 C -0.462 4.462 10 H 0.095 0.905 11 C -0.213 4.213 12 N -0.562 5.562 13 Si 0.815 3.185 14 H -0.196 1.196 15 H -0.195 1.195 16 H -0.199 1.199 17 C -0.141 4.141 18 C -0.074 4.074 19 C -0.158 4.158 20 C -0.068 4.068 21 N -0.187 5.187 22 N -0.118 5.118 23 H 0.307 0.693 24 C -0.040 4.040 25 C -0.248 4.248 26 C -0.043 4.043 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.259 0.741 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.736 3.127 -24.980 25.235 hybrid contribution 0.920 0.827 0.892 1.525 sum -0.816 3.954 -24.088 24.424 Atomic orbital electron populations 1.21782 0.93374 1.01972 1.01905 1.20471 0.96251 0.95383 0.85534 0.91473 1.60231 1.34519 1.32515 1.03611 1.21589 1.02341 0.93735 0.89028 1.20931 0.83024 0.87979 0.85444 1.90494 1.56553 1.18301 1.85622 1.41926 1.58435 1.12609 1.08206 1.19652 1.42001 0.95920 0.88641 0.90473 1.26015 0.97315 0.96637 1.01308 1.69668 1.48709 1.09667 1.28129 0.84949 0.78481 0.78015 0.77025 1.19637 1.19488 1.19903 1.19308 1.04852 0.93384 0.96509 1.20642 0.95376 0.94409 0.96974 1.19947 1.04898 0.99570 0.91396 1.21188 0.97800 0.94547 0.93278 1.77605 1.28858 1.06195 1.06055 1.46380 1.45564 1.03393 1.16429 0.69284 1.23504 0.95160 0.95104 0.90210 1.19963 1.14217 0.92688 0.97920 1.20352 0.93941 1.00226 0.89756 0.90659 0.93328 0.92600 0.83818 0.87661 0.91434 0.76927 0.91321 0.85786 0.85796 0.74139 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.39 71.98 0.68 -2.23 16 2 C 0.13 3.13 2.78 44.17 0.12 3.25 16 3 H 0.07 1.35 7.58 -2.39 -0.02 1.33 16 4 N -0.68 -21.64 5.24 -499.45 -2.62 -24.26 16 5 C 0.07 2.24 5.96 85.56 0.51 2.75 16 6 C 0.44 21.13 7.82 87.66 0.69 21.82 16 7 O -0.62 -35.22 15.78 -3.08 -0.05 -35.26 16 8 N -0.57 -29.77 5.29 -306.98 -1.62 -31.39 16 9 C -0.33 -19.14 9.68 84.04 0.81 -18.32 16 10 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 11 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 12 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 13 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 17 C -0.14 -3.25 4.68 -20.11 -0.09 -3.35 16 18 C -0.05 -1.39 8.82 22.02 0.19 -1.19 16 19 C -0.14 -3.74 10.08 22.39 0.23 -3.51 16 20 C 0.08 2.21 7.49 42.16 0.32 2.52 16 21 N -0.36 -8.76 12.70 -48.70 -0.62 -9.38 16 22 N -0.42 -5.50 7.18 -56.35 -0.40 -5.91 16 23 H 0.46 2.18 8.96 -213.41 -1.91 0.27 16 24 C 0.12 1.27 12.07 84.37 1.02 2.29 16 25 C -0.24 -4.68 6.33 -20.23 -0.13 -4.81 16 26 C -0.02 -0.42 9.65 22.38 0.22 -0.20 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.05 1.23 7.45 -2.39 -0.02 1.21 16 30 H 0.34 12.01 7.66 -89.69 -0.69 11.33 16 31 H 0.11 3.24 7.44 -2.39 -0.02 3.22 16 32 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 33 H 0.40 19.40 7.90 -92.71 -0.73 18.67 16 34 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 35 H 0.12 3.64 7.62 -2.91 -0.02 3.61 16 36 H 0.12 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.24 -0.27 8.06 -2.91 -0.02 -0.29 16 38 H 0.15 1.84 7.97 -2.91 -0.02 1.82 16 Total: -1.00 -77.26 328.90 -0.18 -77.45 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -2.21 Total: 34.18 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.02 Total: -1.23 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -4.98 Total: -120.61 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.05 Total: -35.26 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -77.26 -0.18 -77.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353321212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.236 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds