Wall clock time and date at job start Tue Mar 31 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46769 * 2 1 4 4 H 1.09001 * 109.47684 * 56.69695 * 3 2 1 5 5 C 1.50706 * 109.47120 * 176.70060 * 3 2 1 6 6 H 1.07998 * 120.00482 * 114.40312 * 5 3 2 7 7 C 1.37883 * 119.99778 * 294.40161 * 5 3 2 8 8 N 1.31509 * 120.00082 * 159.59450 * 7 5 3 9 9 Si 1.86800 * 119.99994 * 339.60205 * 7 5 3 10 10 H 1.48503 * 109.46829 * 269.99907 * 9 7 5 11 11 H 1.48506 * 109.47311 * 29.99626 * 9 7 5 12 12 H 1.48497 * 109.47180 * 149.99813 * 9 7 5 13 13 N 1.46505 * 109.47298 * 296.69660 * 3 2 1 14 14 C 1.34775 * 119.99625 * 85.00009 * 13 3 2 15 15 O 1.21279 * 120.00298 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99714 * 180.02562 * 14 13 3 17 17 N 1.46493 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.31461 * 120.00140 * 246.43046 * 17 16 14 19 19 C 1.41587 * 119.68587 * 185.62796 * 18 17 16 20 20 C 1.35519 * 119.53476 * 179.97438 * 19 18 17 21 21 C 1.46372 * 118.94932 * 359.97438 * 20 19 18 22 22 C 1.43200 * 120.31630 * 180.02562 * 21 20 19 23 23 N 9.97455 * 37.87546 * 282.11394 * 2 1 3 24 24 C 1.37815 * 119.36901 * 0.02562 * 21 20 19 25 25 N 1.35490 * 120.40226 * 359.72196 * 24 21 20 26 26 H 0.96999 * 119.44295 * 180.29051 * 25 24 21 27 27 H 1.09006 * 109.46863 * 60.00461 * 1 2 3 28 28 H 1.09001 * 109.46665 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47629 * 300.00135 * 1 2 3 30 30 H 1.08996 * 109.47629 * 239.99865 * 2 1 3 31 31 H 1.09006 * 109.46863 * 119.99539 * 2 1 3 32 32 H 0.97005 * 119.99876 * 354.93930 * 8 7 5 33 33 H 0.96996 * 119.99862 * 265.00477 * 13 3 2 34 34 H 1.08996 * 109.46822 * 300.00283 * 16 14 13 35 35 H 1.09004 * 109.46798 * 60.00239 * 16 14 13 36 36 H 1.08003 * 120.23483 * 359.97127 * 19 18 17 37 37 H 1.08004 * 120.52832 * 179.97438 * 20 19 18 38 38 H 1.08008 * 119.79423 * 180.02562 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6291 1.9732 0.8589 5 6 3.5448 1.4434 0.0818 6 1 4.1305 1.8137 -0.7466 7 6 4.1739 0.9714 1.2143 8 7 5.4322 0.5933 1.1583 9 14 3.2388 0.8689 2.8282 10 1 3.3963 2.1438 3.5733 11 1 1.7991 0.6316 2.5519 12 1 3.7776 -0.2501 3.6422 13 7 1.6176 2.1098 -1.2340 14 6 0.3977 2.6776 -1.3094 15 8 -0.3504 2.6365 -0.3557 16 6 -0.0370 3.3635 -2.5790 17 7 -1.3912 3.8952 -2.4077 18 6 -2.3867 3.3959 -3.1063 19 6 -3.6685 3.9918 -3.0252 20 6 -4.6924 3.4749 -3.7470 21 6 -4.4431 2.3086 -4.5956 22 6 -5.5036 1.7389 -5.3711 23 7 -6.3433 1.2851 -5.9875 24 6 -3.1779 1.7639 -4.6412 25 7 -2.1719 2.3048 -3.9125 26 1 -1.2858 1.9128 -3.9582 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8935 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 5.8962 0.5768 0.3066 33 1 2.2161 2.1429 -1.9967 34 1 0.6483 4.1809 -2.8032 35 1 -0.0288 2.6468 -3.4003 36 1 -3.8292 4.8522 -2.3926 37 1 -5.6767 3.9164 -3.6970 38 1 -2.9862 0.9035 -5.2653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358059539.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:14:43 Heat of formation + Delta-G solvation = 26.265665 kcal Electronic energy + Delta-G solvation = -21856.723509 eV Core-core repulsion = 18506.196310 eV Total energy + Delta-G solvation = -3350.527199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56231 -40.55543 -37.77112 -37.07855 -35.71840 -34.46364 -34.26901 -33.24135 -31.38733 -29.40138 -27.93433 -25.03149 -24.38353 -23.57790 -21.97784 -21.16770 -21.09545 -19.79611 -18.45698 -17.84352 -17.72119 -17.13521 -16.75281 -16.31989 -15.69430 -15.47700 -15.22217 -14.85579 -14.76599 -14.55727 -14.45294 -14.33662 -14.19200 -13.93280 -13.61300 -13.32264 -13.11601 -12.70623 -12.50030 -12.43801 -12.33300 -11.75281 -11.62679 -11.53030 -11.16498 -11.14574 -10.61006 -10.48332 -10.43738 -9.75924 -8.80186 -8.37172 -6.42555 0.00757 0.33406 1.46785 1.47204 1.59878 1.69238 1.79626 1.96770 2.01523 2.41741 2.53916 2.85014 2.97851 3.07652 3.41233 3.73031 3.96913 4.04258 4.07018 4.26717 4.29749 4.38147 4.50542 4.54410 4.61075 4.85444 5.01665 5.06805 5.22318 5.25602 5.27698 5.35243 5.54609 5.64541 5.70367 5.70831 6.01094 6.03378 6.55124 6.64800 6.86536 7.05604 7.28349 7.52928 8.58198 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.031770 B = 0.003249 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.113305 B = 8614.933718 C = 8772.522526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.126 4.126 3 C 0.253 3.747 4 H 0.017 0.983 5 C -0.616 4.616 6 H 0.043 0.957 7 C 0.001 3.999 8 N -0.925 5.925 9 Si 1.067 2.933 10 H -0.278 1.278 11 H -0.255 1.255 12 H -0.279 1.279 13 N -0.705 5.705 14 C 0.495 3.505 15 O -0.570 6.570 16 C 0.039 3.961 17 N -0.602 5.602 18 C 0.398 3.602 19 C -0.164 4.164 20 C 0.006 3.994 21 C -0.171 4.171 22 C 0.303 3.697 23 N -0.484 5.484 24 C 0.233 3.767 25 N -0.623 5.623 26 H 0.427 0.573 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.261 0.739 33 H 0.403 0.597 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.078 2.931 -14.632 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C 0.148 3.852 4 H 0.034 0.966 5 C -0.654 4.654 6 H 0.061 0.939 7 C -0.201 4.201 8 N -0.559 5.559 9 Si 0.890 3.110 10 H -0.204 1.204 11 H -0.179 1.179 12 H -0.205 1.205 13 N -0.355 5.355 14 C 0.281 3.719 15 O -0.449 6.449 16 C -0.095 4.095 17 N -0.329 5.329 18 C 0.133 3.867 19 C -0.186 4.186 20 C -0.019 4.019 21 C -0.184 4.184 22 C -0.010 4.010 23 N -0.162 5.162 24 C 0.096 3.904 25 N -0.241 5.241 26 H 0.268 0.732 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.238 0.762 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.372 2.554 -12.567 22.405 hybrid contribution 1.684 -0.147 -2.034 2.645 sum -16.688 2.407 -14.602 22.305 Atomic orbital electron populations 1.21713 0.95626 1.00120 1.01036 1.22095 0.95132 0.98300 1.00921 1.18750 0.92951 0.89437 0.84071 0.96564 1.22236 0.91467 1.47006 1.04649 0.93896 1.26667 0.96435 0.91822 1.05156 1.70924 1.12792 1.43017 1.29203 0.83736 0.76218 0.77742 0.73297 1.20444 1.17943 1.20471 1.46121 1.16086 1.56080 1.17215 1.21265 0.81547 0.78391 0.90692 1.90660 1.54176 1.60064 1.40025 1.21781 0.93742 1.00217 0.93732 1.73519 0.98750 1.33705 1.26885 1.20545 0.95985 0.84335 0.85872 1.20655 0.88459 1.04003 1.05450 1.22185 0.99709 0.90509 0.89540 1.16144 0.89395 1.03942 1.08924 1.25115 0.92408 0.91938 0.91574 1.81354 1.11101 1.10913 1.12783 1.22663 0.85643 0.94100 0.87967 1.42965 1.13720 1.27980 1.39389 0.73160 0.93321 0.92498 0.94867 0.92349 0.93399 0.92962 0.76247 0.86393 0.89455 0.82592 0.81795 0.77207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.48 71.98 0.61 -4.13 16 2 C -0.13 -5.26 5.06 30.60 0.15 -5.10 16 3 C 0.25 11.63 1.81 44.25 0.08 11.71 16 4 H 0.02 0.85 6.01 -2.39 -0.01 0.84 16 5 C -0.62 -32.66 8.98 25.60 0.23 -32.43 16 6 H 0.04 2.39 7.96 -2.91 -0.02 2.37 16 7 C 0.00 0.05 5.27 84.66 0.45 0.50 16 8 N -0.92 -54.99 13.70 21.45 0.29 -54.70 16 9 Si 1.07 50.33 26.32 68.60 1.81 52.13 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.26 -11.38 5.82 99.48 0.58 -10.80 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.70 -26.05 5.00 -446.08 -2.23 -28.28 16 14 C 0.49 17.32 6.39 87.66 0.56 17.88 16 15 O -0.57 -24.88 13.56 -3.03 -0.04 -24.92 16 16 C 0.04 0.94 6.74 85.64 0.58 1.51 16 17 N -0.60 -15.77 10.03 -348.65 -3.50 -19.27 16 18 C 0.40 7.43 7.46 134.51 1.00 8.43 16 19 C -0.16 -2.44 9.97 22.47 0.22 -2.22 16 20 C 0.01 0.06 10.06 23.76 0.24 0.30 16 21 C -0.17 -1.64 5.88 -20.02 -0.12 -1.76 16 22 C 0.30 4.24 15.38 88.33 1.36 5.60 16 23 N -0.48 -9.80 18.54 19.01 0.35 -9.45 16 24 C 0.23 1.43 10.94 84.03 0.92 2.35 16 25 N -0.62 -6.80 5.19 -190.95 -0.99 -7.79 16 26 H 0.43 3.58 6.15 -92.71 -0.57 3.01 16 27 H 0.05 1.72 5.69 -2.38 -0.01 1.71 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.03 1.36 7.74 -2.39 -0.02 1.34 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.05 2.11 5.54 -2.38 -0.01 2.10 16 32 H 0.26 15.45 8.73 -92.70 -0.81 14.64 16 33 H 0.40 12.76 8.53 -92.71 -0.79 11.97 16 34 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.09 1.33 5.48 -2.39 -0.01 1.32 16 36 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.16 0.92 8.06 -2.91 -0.02 0.89 16 38 H 0.21 -0.41 8.06 -2.91 -0.02 -0.43 16 Total: -1.00 -77.63 325.22 1.58 -76.05 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -0.40 Total: 13.58 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 6.29 Total: 2.64 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -6.07 Total: -119.49 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.04 Total: -24.92 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.81 Total: 52.13 kcal Total: -77.63 1.58 -76.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358059539.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.320 kcal (2) G-P(sol) polarization free energy of solvation -77.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds