Wall clock time and date at job start Tue Mar 31 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46852 * 110.99691 * 2 1 4 4 C 1.53046 * 109.51988 * 185.83746 * 3 2 1 5 5 C 1.53116 * 109.27935 * 300.81734 * 4 3 2 6 6 O 1.42898 * 109.52675 * 297.68949 * 5 4 3 7 7 C 1.52992 * 109.52151 * 177.55847 * 5 4 3 8 8 N 1.46506 * 109.47161 * 185.12643 * 7 5 4 9 9 C 1.34773 * 119.99968 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00360 * 359.73034 * 9 8 7 11 11 C 1.50706 * 120.00081 * 180.02562 * 9 8 7 12 12 S 1.80996 * 109.47276 * 179.72626 * 11 9 8 13 13 C 1.76195 * 99.99998 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00413 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00625 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99753 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46972 * 89.99852 * 17 15 13 19 19 H 1.48496 * 109.47365 * 210.00140 * 17 15 13 20 20 H 1.48495 * 109.47015 * 330.00282 * 17 15 13 21 21 C 1.53123 * 109.21122 * 57.62541 * 5 4 3 22 22 C 1.46850 * 110.99925 * 124.20583 * 2 1 3 23 23 H 1.09000 * 109.47211 * 60.00312 * 1 2 3 24 24 H 1.09006 * 109.46880 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47670 * 300.00257 * 1 2 3 26 26 H 1.08991 * 109.46354 * 65.82592 * 3 2 1 27 27 H 1.08994 * 109.45476 * 305.84692 * 3 2 1 28 28 H 1.09001 * 109.49778 * 180.88076 * 4 3 2 29 29 H 1.08995 * 109.49948 * 60.76329 * 4 3 2 30 30 H 0.96693 * 114.00037 * 179.87238 * 6 5 4 31 31 H 1.09004 * 109.47116 * 65.13279 * 7 5 4 32 32 H 1.08998 * 109.47794 * 305.13190 * 7 5 4 33 33 H 0.96998 * 119.99507 * 0.02562 * 8 7 5 34 34 H 1.09001 * 109.46564 * 299.73030 * 11 9 8 35 35 H 1.08998 * 109.47012 * 59.72084 * 11 9 8 36 36 H 0.96993 * 120.00179 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.50038 * 62.31617 * 21 5 4 38 38 H 1.08999 * 109.50553 * 182.43551 * 21 5 4 39 39 H 1.08995 * 109.46260 * 294.17702 * 22 2 1 40 40 H 1.09000 * 109.46290 * 54.15950 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5371 1.0144 6 8 3.8183 1.1914 2.2488 7 6 5.6360 0.4451 0.8406 8 7 6.1955 -0.4191 1.8829 9 6 7.5228 -0.6481 1.9278 10 8 8.2537 -0.1426 1.1023 11 6 8.0983 -1.5375 2.9996 12 16 9.8922 -1.6534 2.7887 13 6 10.2902 -2.7193 4.1340 14 1 9.5081 -3.0853 4.7827 15 6 11.6089 -3.0887 4.3602 16 7 11.9062 -3.8854 5.3650 17 14 12.9616 -2.4562 3.2379 18 1 13.4893 -1.1750 3.7721 19 1 14.0587 -3.4549 3.1734 20 1 12.4122 -2.2358 1.8761 21 6 3.5183 -0.8714 1.0225 22 6 1.9952 -0.7707 1.1338 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7324 1.8608 0.9375 27 1 1.5633 1.9256 -0.8330 28 1 3.9098 2.3513 -0.1310 29 1 3.7813 0.8568 -1.0905 30 1 4.1675 0.7391 3.0288 31 1 6.0721 1.4408 0.9215 32 1 5.8648 0.0269 -0.1396 33 1 5.6104 -0.8271 2.5403 34 1 7.8740 -1.1169 3.9799 35 1 7.6583 -2.5317 2.9217 36 1 12.8277 -4.1438 5.5228 37 1 3.7816 -1.3845 0.0976 38 1 3.9101 -1.4292 1.8731 39 1 1.7324 -0.2707 2.0660 40 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397632265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:02 Heat of formation + Delta-G solvation = -88.415755 kcal Electronic energy + Delta-G solvation = -20835.330910 eV Core-core repulsion = 17582.981952 eV Total energy + Delta-G solvation = -3252.348958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.44340 -38.97611 -36.81809 -34.25225 -32.50671 -32.45020 -31.28255 -29.92886 -27.64720 -25.65098 -24.93395 -23.71560 -22.03329 -20.52331 -20.16249 -18.08231 -16.94037 -16.66962 -16.28547 -15.64308 -15.52520 -15.34578 -15.06871 -14.98712 -14.42183 -14.18079 -13.81596 -13.58509 -13.31382 -12.94517 -12.84566 -12.78968 -12.49823 -12.07073 -11.85780 -11.75110 -11.55739 -11.45553 -11.28611 -11.02254 -10.80898 -10.58377 -10.15464 -9.87288 -9.58483 -9.08990 -9.00905 -8.67235 -8.52622 -6.94221 -6.30710 -4.02774 2.71580 2.91898 3.25713 3.32442 3.49361 3.54139 3.60958 3.85824 4.26155 4.31534 4.34375 4.43738 4.69240 4.76486 4.92726 4.97661 5.08342 5.10452 5.13122 5.18955 5.24960 5.32543 5.45979 5.47838 5.49695 5.51682 5.68211 5.69952 5.73313 5.77899 5.91427 5.96433 6.40298 6.68564 6.70533 7.26631 7.47971 7.92274 8.39425 8.41951 9.15441 10.78485 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.044010 B = 0.002914 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.065875 B = 9606.888891 C = 9929.790605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.100 4.100 5 C 0.124 3.876 6 O -0.554 6.554 7 C 0.097 3.903 8 N -0.738 5.738 9 C 0.531 3.469 10 O -0.516 6.516 11 C -0.124 4.124 12 S -0.141 6.141 13 C -0.522 4.522 14 H 0.088 0.912 15 C 0.095 3.905 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C -0.143 4.143 22 C 0.059 3.941 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.025 0.975 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.375 0.625 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.395 0.605 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.178 8.203 -8.983 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.069 4.069 4 C -0.138 4.138 5 C 0.083 3.917 6 O -0.360 6.360 7 C -0.027 4.027 8 N -0.394 5.394 9 C 0.317 3.683 10 O -0.390 6.390 11 C -0.275 4.275 12 S 0.085 5.915 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.682 3.318 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.182 4.182 22 C -0.069 4.069 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.223 0.777 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.230 0.770 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.953 9.147 -11.099 26.245 hybrid contribution -0.384 -0.764 2.193 2.354 sum -22.337 8.383 -8.906 25.466 Atomic orbital electron populations 1.22336 0.87226 1.02056 1.00652 1.61959 1.07635 1.13974 1.43384 1.22007 0.94730 0.89081 1.01054 1.21534 0.94900 1.00836 0.96526 1.21501 0.92030 0.92275 0.85938 1.86557 1.79980 1.53982 1.15453 1.22004 0.92573 0.95736 0.92435 1.45969 1.08018 1.52059 1.33343 1.20288 0.81371 0.80964 0.85650 1.90710 1.58682 1.49722 1.39900 1.23281 1.02708 1.01583 0.99943 1.84812 0.98345 1.65394 1.42901 1.22309 0.97462 1.33084 1.14083 0.89387 1.24717 0.98045 0.93723 0.94842 1.69935 1.19915 1.33427 1.28394 0.86732 0.82208 0.79454 0.83443 1.19197 1.19923 1.15915 1.22280 0.95392 0.96723 1.03764 1.22004 0.94752 0.98178 0.91942 0.91343 0.91387 0.95683 0.93806 0.90694 0.90260 0.89403 0.77724 0.90602 0.90545 0.77048 0.88490 0.88450 0.91915 0.89616 0.90966 0.94137 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.59 60.06 0.58 0.74 16 2 N -0.54 -4.43 4.91 -242.95 -1.19 -5.62 16 3 C 0.06 0.47 5.33 -3.83 -0.02 0.45 16 4 C -0.10 -0.81 5.11 -26.65 -0.14 -0.95 16 5 C 0.12 1.05 0.72 -90.50 -0.07 0.98 16 6 O -0.55 -4.93 11.85 -35.23 -0.42 -5.35 16 7 C 0.10 1.05 4.85 -4.04 -0.02 1.03 16 8 N -0.74 -8.66 5.04 -60.29 -0.30 -8.97 16 9 C 0.53 9.11 7.85 -10.98 -0.09 9.02 16 10 O -0.52 -10.98 15.86 5.56 0.09 -10.89 16 11 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 12 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 13 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 14 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 15 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 16 N -0.88 -26.45 13.97 55.49 0.78 -25.67 16 17 Si 0.86 21.71 27.74 -169.99 -4.71 17.00 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 21 C -0.14 -1.11 4.81 -26.64 -0.13 -1.24 16 22 C 0.06 0.46 5.33 -3.83 -0.02 0.44 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.04 0.40 7.76 -51.93 -0.40 -0.01 16 27 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.38 2.48 8.20 45.56 0.37 2.85 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.39 3.42 6.40 -40.82 -0.26 3.16 16 34 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.49 6.67 -51.93 -0.35 0.14 16 39 H 0.04 0.33 7.76 -51.93 -0.40 -0.07 16 40 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -34.14 334.86 -7.86 -42.01 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.68 Total: 1.53 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.54 Total: -3.55 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.72 Total: -40.26 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.33 Total: -16.24 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.14 -7.86 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397632265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.410 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds