Wall clock time and date at job start Tue Mar 31 2020 02:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46852 * 110.99691 * 2 1 4 4 C 1.53046 * 109.51988 * 185.83746 * 3 2 1 5 5 C 1.53116 * 109.27935 * 300.81734 * 4 3 2 6 6 O 1.42898 * 109.52675 * 297.68949 * 5 4 3 7 7 C 1.52992 * 109.52151 * 177.55847 * 5 4 3 8 8 N 1.46506 * 109.47161 * 185.12643 * 7 5 4 9 9 C 1.34773 * 119.99968 * 179.97438 * 8 7 5 10 10 O 1.21283 * 120.00360 * 359.73034 * 9 8 7 11 11 C 1.50706 * 120.00081 * 180.02562 * 9 8 7 12 12 S 1.80996 * 109.47276 * 179.72626 * 11 9 8 13 13 C 1.76195 * 99.99998 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00003 * 0.02562 * 13 12 11 15 15 C 1.38797 * 120.00413 * 180.02562 * 13 12 11 16 16 N 1.31632 * 120.00625 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99753 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46972 * 89.99852 * 17 15 13 19 19 H 1.48496 * 109.47365 * 210.00140 * 17 15 13 20 20 H 1.48495 * 109.47015 * 330.00282 * 17 15 13 21 21 C 1.53123 * 109.21122 * 57.62541 * 5 4 3 22 22 C 1.46850 * 110.99925 * 124.20583 * 2 1 3 23 23 H 1.09000 * 109.47211 * 60.00312 * 1 2 3 24 24 H 1.09006 * 109.46880 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47670 * 300.00257 * 1 2 3 26 26 H 1.08991 * 109.46354 * 65.82592 * 3 2 1 27 27 H 1.08994 * 109.45476 * 305.84692 * 3 2 1 28 28 H 1.09001 * 109.49778 * 180.88076 * 4 3 2 29 29 H 1.08995 * 109.49948 * 60.76329 * 4 3 2 30 30 H 0.96693 * 114.00037 * 179.87238 * 6 5 4 31 31 H 1.09004 * 109.47116 * 65.13279 * 7 5 4 32 32 H 1.08998 * 109.47794 * 305.13190 * 7 5 4 33 33 H 0.96998 * 119.99507 * 0.02562 * 8 7 5 34 34 H 1.09001 * 109.46564 * 299.73030 * 11 9 8 35 35 H 1.08998 * 109.47012 * 59.72084 * 11 9 8 36 36 H 0.96993 * 120.00179 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.50038 * 62.31617 * 21 5 4 38 38 H 1.08999 * 109.50553 * 182.43551 * 21 5 4 39 39 H 1.08995 * 109.46260 * 294.17702 * 22 2 1 40 40 H 1.09000 * 109.46290 * 54.15950 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5371 1.0144 6 8 3.8183 1.1914 2.2488 7 6 5.6360 0.4451 0.8406 8 7 6.1955 -0.4191 1.8829 9 6 7.5228 -0.6481 1.9278 10 8 8.2537 -0.1426 1.1023 11 6 8.0983 -1.5375 2.9996 12 16 9.8922 -1.6534 2.7887 13 6 10.2902 -2.7193 4.1340 14 1 9.5081 -3.0853 4.7827 15 6 11.6089 -3.0887 4.3602 16 7 11.9062 -3.8854 5.3650 17 14 12.9616 -2.4562 3.2379 18 1 13.4893 -1.1750 3.7721 19 1 14.0587 -3.4549 3.1734 20 1 12.4122 -2.2358 1.8761 21 6 3.5183 -0.8714 1.0225 22 6 1.9952 -0.7707 1.1338 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.7324 1.8608 0.9375 27 1 1.5633 1.9256 -0.8330 28 1 3.9098 2.3513 -0.1310 29 1 3.7813 0.8568 -1.0905 30 1 4.1675 0.7391 3.0288 31 1 6.0721 1.4408 0.9215 32 1 5.8648 0.0269 -0.1396 33 1 5.6104 -0.8271 2.5403 34 1 7.8740 -1.1169 3.9799 35 1 7.6583 -2.5317 2.9217 36 1 12.8277 -4.1438 5.5228 37 1 3.7816 -1.3845 0.0976 38 1 3.9101 -1.4292 1.8731 39 1 1.7324 -0.2707 2.0660 40 1 1.5636 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397632265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:02 Heat of formation + Delta-G solvation = -116.223327 kcal Electronic energy + Delta-G solvation = -20836.536737 eV Core-core repulsion = 17582.981952 eV Total energy + Delta-G solvation = -3253.554785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31088 -40.13270 -37.55170 -35.34131 -34.66932 -33.26557 -31.91333 -31.24461 -28.55734 -27.82663 -25.67916 -24.37388 -22.76392 -21.78733 -20.82342 -19.97557 -18.21221 -17.55771 -17.36485 -17.08750 -16.70096 -16.45361 -16.03525 -15.85426 -15.64707 -15.19874 -15.13348 -14.86516 -14.47015 -14.33692 -13.88443 -13.44315 -13.35806 -13.30367 -13.09630 -13.00333 -12.69080 -12.52111 -12.36765 -12.22326 -12.07603 -11.87678 -11.43780 -11.17162 -11.02227 -10.84422 -10.53284 -10.22290 -9.27301 -8.99630 -8.51565 -6.22241 0.98588 1.31482 1.46689 1.53978 1.55313 2.16845 2.25366 2.71115 2.86801 2.96398 3.21958 3.50297 3.66820 3.77128 3.84355 4.16611 4.22602 4.33043 4.36219 4.45801 4.46829 4.54971 4.60835 4.67343 4.70791 4.78991 4.89043 4.95853 5.02849 5.05845 5.11949 5.26550 5.32169 5.70817 6.11359 6.11680 6.12369 6.36786 6.68563 6.93851 7.14270 8.60722 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.044010 B = 0.002914 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.065875 B = 9606.888891 C = 9929.790605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.063 3.937 4 C -0.102 4.102 5 C 0.135 3.865 6 O -0.562 6.562 7 C 0.100 3.900 8 N -0.710 5.710 9 C 0.536 3.464 10 O -0.561 6.561 11 C -0.111 4.111 12 S -0.178 6.178 13 C -0.527 4.527 14 H 0.064 0.936 15 C 0.045 3.955 16 N -0.917 5.917 17 Si 0.914 3.086 18 H -0.263 1.263 19 H -0.260 1.260 20 H -0.237 1.237 21 C -0.141 4.141 22 C 0.060 3.940 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.385 0.615 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.413 0.587 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.277 0.723 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.547 8.595 -9.684 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.065 4.065 4 C -0.141 4.141 5 C 0.094 3.906 6 O -0.370 6.370 7 C -0.024 4.024 8 N -0.365 5.365 9 C 0.322 3.678 10 O -0.439 6.439 11 C -0.262 4.262 12 S 0.049 5.951 13 C -0.675 4.675 14 H 0.082 0.918 15 C -0.160 4.160 16 N -0.555 5.555 17 Si 0.736 3.264 18 H -0.188 1.188 19 H -0.184 1.184 20 H -0.160 1.160 21 C -0.179 4.179 22 C -0.068 4.068 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.234 0.766 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.252 0.748 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.380 9.527 -11.772 27.857 hybrid contribution -0.152 -0.864 2.438 2.591 sum -23.533 8.663 -9.334 26.758 Atomic orbital electron populations 1.22379 0.86354 1.02618 1.00958 1.61996 1.08555 1.13914 1.43531 1.21969 0.94495 0.89195 1.00848 1.21570 0.95155 1.00847 0.96489 1.21387 0.90121 0.92976 0.86143 1.86559 1.80030 1.54466 1.15913 1.22084 0.94043 0.94593 0.91703 1.45668 1.06335 1.50990 1.33525 1.19969 0.82717 0.80456 0.84656 1.90703 1.60145 1.51621 1.41470 1.23271 0.97801 1.03454 1.01680 1.84758 1.04461 1.64440 1.41457 1.22456 0.97093 1.33296 1.14648 0.91806 1.25561 1.00314 0.93995 0.96178 1.70011 1.20837 1.34704 1.29952 0.85874 0.79782 0.79269 0.81493 1.18777 1.18411 1.16044 1.22269 0.95566 0.96033 1.04048 1.22007 0.94600 0.98500 0.91672 0.90637 0.90726 0.95785 0.94962 0.89738 0.90275 0.89087 0.76555 0.91817 0.90933 0.74846 0.86631 0.86583 0.91380 0.90124 0.89724 0.94569 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.59 127.69 1.22 1.50 16 2 N -0.56 -7.96 4.91 -922.56 -4.53 -12.49 16 3 C 0.06 0.90 5.33 86.33 0.46 1.36 16 4 C -0.10 -1.50 5.11 30.65 0.16 -1.35 16 5 C 0.13 2.02 0.72 -10.72 -0.01 2.02 16 6 O -0.56 -8.80 11.85 -148.98 -1.77 -10.56 16 7 C 0.10 1.98 4.85 86.38 0.42 2.40 16 8 N -0.71 -15.00 5.04 -463.05 -2.34 -17.33 16 9 C 0.54 17.46 7.85 87.66 0.69 18.15 16 10 O -0.56 -23.42 15.86 -3.04 -0.05 -23.47 16 11 C -0.11 -3.97 6.16 71.24 0.44 -3.54 16 12 S -0.18 -8.83 18.55 -56.49 -1.05 -9.87 16 13 C -0.53 -30.27 10.04 67.95 0.68 -29.59 16 14 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 15 C 0.04 2.62 5.50 84.86 0.47 3.08 16 16 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 17 Si 0.91 44.77 27.74 68.60 1.90 46.67 16 18 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 21 C -0.14 -1.85 4.81 30.65 0.15 -1.70 16 22 C 0.06 0.80 5.33 86.33 0.46 1.26 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.07 0.73 8.09 -2.38 -0.02 0.71 16 25 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.03 0.54 7.76 -2.39 -0.02 0.52 16 27 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.39 4.06 8.20 -74.06 -0.61 3.45 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 33 H 0.41 5.83 6.40 -92.71 -0.59 5.24 16 34 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 35 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 36 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 0.88 6.67 -2.39 -0.02 0.86 16 39 H 0.04 0.52 7.76 -2.39 -0.02 0.50 16 40 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 Total: -1.00 -73.28 334.86 -2.58 -75.87 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -0.20 Total: 12.77 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.14 Total: -6.40 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -6.57 Total: -85.01 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.81 Total: -34.03 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.87 kcal Total: -73.28 -2.58 -75.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397632265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.357 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds