Wall clock time and date at job start Tue Mar 31 2020 02:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46961 * 2 1 4 4 C 1.52730 * 109.32778 * 240.27052 * 2 1 3 5 5 H 1.09000 * 109.65690 * 62.56764 * 4 2 1 6 6 C 1.52990 * 109.58196 * 302.24656 * 4 2 1 7 7 S 1.81745 * 108.84020 * 182.42686 * 4 2 1 8 8 O 1.42097 * 109.47261 * 170.46245 * 7 4 2 9 9 C 1.81738 * 102.30507 * 54.42566 * 7 4 2 10 10 C 1.53245 * 108.80232 * 305.45992 * 9 7 4 11 11 N 1.46377 * 109.46713 * 119.99478 * 2 1 3 12 12 C 1.34768 * 119.64910 * 5.09149 * 11 2 1 13 13 O 1.21594 * 120.00012 * 5.55040 * 12 11 2 14 14 N 1.34780 * 120.00277 * 185.54463 * 12 11 2 15 15 C 1.46502 * 119.99842 * 175.21413 * 14 12 11 16 16 C 1.52995 * 109.46611 * 179.72778 * 15 14 12 17 17 C 1.50705 * 109.47001 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99563 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99783 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47215 * 89.99715 * 21 19 17 23 23 H 1.48502 * 109.46785 * 209.99521 * 21 19 17 24 24 H 1.48498 * 109.47121 * 329.99651 * 21 19 17 25 25 H 1.08999 * 109.47326 * 293.54670 * 1 2 3 26 26 H 1.08997 * 109.47083 * 53.54609 * 1 2 3 27 27 H 1.09008 * 109.47022 * 173.54262 * 1 2 3 28 28 H 1.09001 * 109.47289 * 300.63745 * 6 4 2 29 29 H 1.09004 * 109.47430 * 60.63935 * 6 4 2 30 30 H 1.08997 * 109.47415 * 180.63719 * 6 4 2 31 31 H 1.09004 * 109.58717 * 185.66632 * 9 7 4 32 32 H 1.09003 * 109.58732 * 65.25519 * 9 7 4 33 33 H 1.09004 * 109.46397 * 297.65335 * 10 9 7 34 34 H 1.08994 * 109.46719 * 177.66071 * 10 9 7 35 35 H 0.97000 * 119.99701 * 354.93724 * 14 12 11 36 36 H 1.08999 * 109.46810 * 299.71811 * 15 14 12 37 37 H 1.08987 * 109.47172 * 59.72417 * 15 14 12 38 38 H 1.09005 * 109.47000 * 299.99419 * 16 15 14 39 39 H 1.09000 * 109.47872 * 59.99878 * 16 15 14 40 40 H 0.96997 * 119.99625 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0355 -0.7147 -1.2515 5 1 1.7106 -0.1728 -2.1397 6 6 1.4794 -2.1395 -1.2882 7 16 3.8514 -0.7705 -1.2024 8 8 4.3274 -1.6186 -2.2384 9 6 4.1716 -1.5456 0.4099 10 6 3.4493 -0.7417 1.4965 11 7 2.0178 -0.6899 1.1953 12 6 1.1401 -1.2886 2.0244 13 8 -0.0379 -1.3415 1.7274 14 7 1.5679 -1.8286 3.1828 15 6 0.6012 -2.3858 4.1322 16 6 1.3435 -2.9366 5.3515 17 6 0.3491 -3.5092 6.3285 18 1 -0.7066 -3.4825 6.1025 19 6 0.7873 -4.0671 7.5108 20 7 -0.0804 -4.5673 8.3632 21 14 2.6133 -4.1126 7.9019 22 1 2.9940 -2.8770 8.6324 23 1 2.9093 -5.2979 8.7461 24 1 3.3882 -4.1990 6.6380 25 1 -0.3634 0.4105 0.9421 26 1 -0.3633 0.6106 -0.8266 27 1 -0.3633 -1.0212 -0.1156 28 1 1.8014 -2.6783 -0.3970 29 1 0.3904 -2.1040 -1.3177 30 1 1.8503 -2.6516 -2.1760 31 1 5.2434 -1.5470 0.6083 32 1 3.7979 -2.5695 0.4039 33 1 3.8511 0.2711 1.5265 34 1 3.6000 -1.2212 2.4636 35 1 2.5160 -1.8520 3.3860 36 1 -0.0885 -1.6037 4.4496 37 1 0.0431 -3.1899 3.6528 38 1 2.0333 -3.7187 5.0341 39 1 1.9016 -2.1324 5.8310 40 1 0.2278 -4.9594 9.1951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408184047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:43 Heat of formation + Delta-G solvation = -39.925636 kcal Electronic energy + Delta-G solvation = -21829.765730 eV Core-core repulsion = 18579.519462 eV Total energy + Delta-G solvation = -3250.246269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.68233 -37.10271 -35.98077 -35.36564 -34.05251 -32.63360 -31.00791 -30.19066 -28.48639 -25.56848 -24.61305 -23.82081 -21.59926 -20.73103 -19.63908 -18.14109 -17.35129 -16.93416 -16.23945 -16.16246 -15.79594 -15.22751 -14.77890 -14.57335 -14.28276 -14.11613 -13.63076 -13.40283 -13.24241 -13.09935 -12.67719 -12.57915 -12.36280 -12.01424 -11.89923 -11.82009 -11.57334 -11.46873 -11.25111 -11.07304 -10.41122 -10.19083 -10.03052 -9.97417 -9.38919 -9.00139 -8.86111 -8.65232 -8.52432 -8.42670 -6.13559 -4.13741 1.27835 2.18537 2.65897 3.22284 3.29958 3.31218 3.31844 3.50759 3.99094 4.34945 4.35633 4.56112 4.65139 4.74558 4.87616 4.97008 5.19318 5.24533 5.30122 5.34061 5.53057 5.59468 5.64180 5.77887 5.98807 5.99694 6.18156 6.21076 6.35773 6.54006 6.67866 6.79964 6.92348 7.17641 7.20918 7.64578 8.13781 8.42145 8.81504 8.91168 9.46493 10.99540 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.003944 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.455284 B = 7097.104227 C = 7770.356175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.188 3.812 3 H 0.088 0.912 4 C -0.419 4.419 5 H 0.126 0.874 6 C -0.140 4.140 7 S 1.240 4.760 8 O -0.851 6.851 9 C -0.462 4.462 10 C 0.134 3.866 11 N -0.638 5.638 12 C 0.701 3.299 13 O -0.577 6.577 14 N -0.744 5.744 15 C 0.147 3.853 16 C -0.021 4.021 17 C -0.523 4.523 18 H 0.076 0.924 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.882 3.118 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.267 1.267 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.389 0.611 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.404 13.920 -17.796 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.083 3.917 3 H 0.106 0.894 4 C -0.538 4.538 5 H 0.144 0.856 6 C -0.198 4.198 7 S 1.438 4.562 8 O -0.846 6.846 9 C -0.600 4.600 10 C 0.009 3.991 11 N -0.377 5.377 12 C 0.402 3.598 13 O -0.455 6.455 14 N -0.400 5.400 15 C 0.025 3.975 16 C -0.059 4.059 17 C -0.561 4.561 18 H 0.094 0.906 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.192 1.192 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.225 0.775 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.162 14.076 -18.500 25.370 hybrid contribution 0.613 -2.336 0.620 2.494 sum 10.775 11.740 -17.880 23.950 Atomic orbital electron populations 1.22316 0.91649 1.04103 1.01215 1.20493 0.97139 0.93695 0.80330 0.89445 1.27854 1.19075 1.02607 1.04277 0.85579 1.21737 1.03143 0.93257 1.01629 1.70290 0.87345 1.14823 0.83706 1.93114 1.72690 1.70904 1.47898 1.28022 1.07040 1.09158 1.15784 1.21104 0.79986 1.00627 0.97362 1.47313 1.05733 1.58848 1.25829 1.16045 0.84936 0.78453 0.80327 1.90978 1.15827 1.63822 1.74848 1.45912 1.11050 1.63696 1.19353 1.21375 0.90631 0.97281 0.88248 1.19790 0.97082 0.96021 0.93014 1.20908 0.94671 1.38693 1.01824 0.90597 1.24998 0.97671 0.94627 0.95950 1.69903 1.34102 1.39561 1.10065 0.86753 0.85921 0.77822 0.78564 1.20169 1.21270 1.19203 0.90760 0.94462 0.89664 0.92583 0.90939 0.92613 0.85801 0.88803 0.89161 0.89180 0.77476 0.92106 0.92165 0.96200 0.96483 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.32 37.16 0.27 -1.29 16 2 C 0.19 1.67 2.99 -68.14 -0.20 1.47 16 3 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.42 -3.61 2.98 -26.87 -0.08 -3.69 16 5 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 6 C -0.14 -1.68 8.47 37.15 0.31 -1.36 16 7 S 1.24 9.31 13.20 -107.50 -1.42 7.90 16 8 O -0.85 -12.07 17.91 -35.23 -0.63 -12.70 16 9 C -0.46 -3.50 6.25 37.28 0.23 -3.26 16 10 C 0.13 0.97 6.23 -3.98 -0.02 0.94 16 11 N -0.64 -6.75 2.15 -172.00 -0.37 -7.12 16 12 C 0.70 10.69 7.96 -86.92 -0.69 9.99 16 13 O -0.58 -10.62 11.63 5.28 0.06 -10.55 16 14 N -0.74 -11.74 5.46 -65.23 -0.36 -12.10 16 15 C 0.15 2.93 5.62 -4.04 -0.02 2.91 16 16 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 17 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 21 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 25 H 0.07 1.02 6.72 -51.93 -0.35 0.67 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 1.22 4.52 -51.92 -0.23 0.99 16 28 H 0.06 0.76 6.46 -51.93 -0.34 0.42 16 29 H 0.07 0.90 6.28 -51.93 -0.33 0.57 16 30 H 0.05 0.70 8.04 -51.93 -0.42 0.29 16 31 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.98 7.35 -51.93 -0.38 0.60 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.68 5.41 -51.93 -0.28 0.40 16 35 H 0.39 5.13 5.83 -40.82 -0.24 4.90 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.29 8.14 -51.94 -0.42 0.87 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -37.17 318.33 -8.44 -45.60 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.88 Total: 2.24 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.75 Total: -7.81 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.05 Total: -45.59 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.57 Total: -23.26 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Atomic # 16 Polarization: 9.31 SS G_CDS: -1.42 Total: 7.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -37.17 -8.44 -45.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408184047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.679 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds