Wall clock time and date at job start Tue Mar 31 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46961 * 2 1 4 4 C 1.52730 * 109.32778 * 240.27052 * 2 1 3 5 5 H 1.09000 * 109.65690 * 62.56764 * 4 2 1 6 6 C 1.52990 * 109.58196 * 302.24656 * 4 2 1 7 7 S 1.81745 * 108.84020 * 182.42686 * 4 2 1 8 8 O 1.42097 * 109.47261 * 170.46245 * 7 4 2 9 9 C 1.81738 * 102.30507 * 54.42566 * 7 4 2 10 10 C 1.53245 * 108.80232 * 305.45992 * 9 7 4 11 11 N 1.46377 * 109.46713 * 119.99478 * 2 1 3 12 12 C 1.34768 * 119.64910 * 5.09149 * 11 2 1 13 13 O 1.21594 * 120.00012 * 5.55040 * 12 11 2 14 14 N 1.34780 * 120.00277 * 185.54463 * 12 11 2 15 15 C 1.46502 * 119.99842 * 175.21413 * 14 12 11 16 16 C 1.52995 * 109.46611 * 179.72778 * 15 14 12 17 17 C 1.50705 * 109.47001 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99563 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99997 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99783 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00072 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47215 * 89.99715 * 21 19 17 23 23 H 1.48502 * 109.46785 * 209.99521 * 21 19 17 24 24 H 1.48498 * 109.47121 * 329.99651 * 21 19 17 25 25 H 1.08999 * 109.47326 * 293.54670 * 1 2 3 26 26 H 1.08997 * 109.47083 * 53.54609 * 1 2 3 27 27 H 1.09008 * 109.47022 * 173.54262 * 1 2 3 28 28 H 1.09001 * 109.47289 * 300.63745 * 6 4 2 29 29 H 1.09004 * 109.47430 * 60.63935 * 6 4 2 30 30 H 1.08997 * 109.47415 * 180.63719 * 6 4 2 31 31 H 1.09004 * 109.58717 * 185.66632 * 9 7 4 32 32 H 1.09003 * 109.58732 * 65.25519 * 9 7 4 33 33 H 1.09004 * 109.46397 * 297.65335 * 10 9 7 34 34 H 1.08994 * 109.46719 * 177.66071 * 10 9 7 35 35 H 0.97000 * 119.99701 * 354.93724 * 14 12 11 36 36 H 1.08999 * 109.46810 * 299.71811 * 15 14 12 37 37 H 1.08987 * 109.47172 * 59.72417 * 15 14 12 38 38 H 1.09005 * 109.47000 * 299.99419 * 16 15 14 39 39 H 1.09000 * 109.47872 * 59.99878 * 16 15 14 40 40 H 0.96997 * 119.99625 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0355 -0.7147 -1.2515 5 1 1.7106 -0.1728 -2.1397 6 6 1.4794 -2.1395 -1.2882 7 16 3.8514 -0.7705 -1.2024 8 8 4.3274 -1.6186 -2.2384 9 6 4.1716 -1.5456 0.4099 10 6 3.4493 -0.7417 1.4965 11 7 2.0178 -0.6899 1.1953 12 6 1.1401 -1.2886 2.0244 13 8 -0.0379 -1.3415 1.7274 14 7 1.5679 -1.8286 3.1828 15 6 0.6012 -2.3858 4.1322 16 6 1.3435 -2.9366 5.3515 17 6 0.3491 -3.5092 6.3285 18 1 -0.7066 -3.4825 6.1025 19 6 0.7873 -4.0671 7.5108 20 7 -0.0804 -4.5673 8.3632 21 14 2.6133 -4.1126 7.9019 22 1 2.9940 -2.8770 8.6324 23 1 2.9093 -5.2979 8.7461 24 1 3.3882 -4.1990 6.6380 25 1 -0.3634 0.4105 0.9421 26 1 -0.3633 0.6106 -0.8266 27 1 -0.3633 -1.0212 -0.1156 28 1 1.8014 -2.6783 -0.3970 29 1 0.3904 -2.1040 -1.3177 30 1 1.8503 -2.6516 -2.1760 31 1 5.2434 -1.5470 0.6083 32 1 3.7979 -2.5695 0.4039 33 1 3.8511 0.2711 1.5265 34 1 3.6000 -1.2212 2.4636 35 1 2.5160 -1.8520 3.3860 36 1 -0.0885 -1.6037 4.4496 37 1 0.0431 -3.1899 3.6528 38 1 2.0333 -3.7187 5.0341 39 1 1.9016 -2.1324 5.8310 40 1 0.2278 -4.9594 9.1951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408184047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:42 Heat of formation + Delta-G solvation = -69.154725 kcal Electronic energy + Delta-G solvation = -21831.033199 eV Core-core repulsion = 18579.519462 eV Total energy + Delta-G solvation = -3251.513737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.72610 -38.17463 -36.93932 -36.65861 -35.35378 -34.32781 -31.97960 -31.69659 -29.50622 -26.89172 -25.99682 -24.50985 -22.96698 -22.16589 -20.70937 -19.10458 -18.93842 -18.13635 -17.21892 -17.10694 -16.62788 -16.32346 -16.15849 -15.76737 -15.67246 -15.17002 -15.01420 -14.67791 -14.52193 -14.09255 -13.98201 -13.57867 -13.41855 -13.10265 -13.01436 -12.79361 -12.77464 -12.64588 -12.40080 -12.14854 -12.08782 -11.92392 -11.76450 -11.50370 -10.83051 -10.78801 -10.19556 -10.03651 -9.52439 -9.27975 -8.30315 -6.37725 0.64433 1.38314 1.41708 1.52463 1.54187 1.68410 2.18042 2.36611 2.77324 2.95869 3.04839 3.61815 3.77756 3.98096 4.10941 4.13930 4.26763 4.38158 4.41377 4.45596 4.55948 4.66355 4.75559 4.80489 4.82055 4.94796 4.96183 5.04397 5.15500 5.26770 5.41338 5.42794 5.52789 5.70685 5.85189 5.90175 6.22773 6.69681 7.03993 7.26966 7.65850 8.86653 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.003944 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.455284 B = 7097.104227 C = 7770.356175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.185 3.815 3 H 0.146 0.854 4 C -0.421 4.421 5 H 0.152 0.848 6 C -0.139 4.139 7 S 1.319 4.681 8 O -0.917 6.917 9 C -0.462 4.462 10 C 0.125 3.875 11 N -0.630 5.630 12 C 0.694 3.306 13 O -0.616 6.616 14 N -0.738 5.738 15 C 0.166 3.834 16 C -0.011 4.011 17 C -0.539 4.539 18 H 0.027 0.973 19 C 0.004 3.996 20 N -0.951 5.951 21 Si 0.960 3.040 22 H -0.260 1.260 23 H -0.289 1.289 24 H -0.239 1.239 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.154 0.846 32 H 0.061 0.939 33 H 0.147 0.853 34 H 0.090 0.910 35 H 0.405 0.595 36 H 0.044 0.956 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.039 0.961 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.281 16.492 -18.565 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.082 3.918 3 H 0.163 0.837 4 C -0.539 4.539 5 H 0.170 0.830 6 C -0.197 4.197 7 S 1.518 4.482 8 O -0.912 6.912 9 C -0.601 4.601 10 C 0.002 3.998 11 N -0.367 5.367 12 C 0.396 3.604 13 O -0.497 6.497 14 N -0.397 5.397 15 C 0.041 3.959 16 C -0.048 4.048 17 C -0.578 4.578 18 H 0.046 0.954 19 C -0.193 4.193 20 N -0.591 5.591 21 Si 0.782 3.218 22 H -0.185 1.185 23 H -0.215 1.215 24 H -0.162 1.162 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.172 0.828 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.085 16.682 -19.329 29.160 hybrid contribution -0.733 -3.157 0.831 3.346 sum 13.353 13.525 -18.498 26.522 Atomic orbital electron populations 1.22148 0.93966 1.02102 1.00792 1.20826 0.95424 0.96205 0.79378 0.83661 1.27966 1.20045 1.00398 1.05513 0.82998 1.21686 1.02511 0.95623 0.99892 1.69469 0.84678 1.12348 0.81665 1.92995 1.74231 1.72622 1.51397 1.28065 1.08947 1.07341 1.15761 1.21556 0.77559 1.03774 0.96919 1.47399 1.06721 1.57406 1.25204 1.16284 0.85083 0.78455 0.80573 1.90986 1.17987 1.65071 1.75669 1.45546 1.11072 1.63906 1.19143 1.20802 0.90847 0.95988 0.88231 1.19627 0.96018 0.96617 0.92576 1.21257 0.93822 1.39212 1.03491 0.95436 1.26092 1.03835 0.93874 0.95501 1.70082 1.37142 1.41032 1.10893 0.85527 0.78595 0.78216 0.79452 1.18473 1.21474 1.16216 0.93281 0.91919 0.93292 0.94721 0.92148 0.93867 0.82843 0.91983 0.83528 0.89170 0.75586 0.93745 0.94901 0.95114 0.94269 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 7.32 71.98 0.53 -2.40 16 2 C 0.19 2.68 2.99 44.92 0.13 2.81 16 3 H 0.15 0.60 8.14 -2.39 -0.02 0.59 16 4 C -0.42 -6.14 2.98 30.50 0.09 -6.05 16 5 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 6 C -0.14 -3.36 8.47 71.98 0.61 -2.75 16 7 S 1.32 15.35 13.20 -56.49 -0.75 14.61 16 8 O -0.92 -24.44 17.91 -148.98 -2.67 -27.10 16 9 C -0.46 -5.33 6.25 72.06 0.45 -4.88 16 10 C 0.13 1.22 6.23 86.48 0.54 1.76 16 11 N -0.63 -11.57 2.15 -816.35 -1.76 -13.33 16 12 C 0.69 20.72 7.96 179.06 1.43 22.14 16 13 O -0.62 -23.48 11.63 -4.01 -0.05 -23.52 16 14 N -0.74 -22.52 5.46 -478.55 -2.61 -25.13 16 15 C 0.17 6.74 5.62 86.38 0.49 7.23 16 16 C -0.01 -0.46 4.16 29.85 0.12 -0.34 16 17 C -0.54 -30.75 9.66 25.60 0.25 -30.50 16 18 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 19 C 0.00 0.23 5.47 84.65 0.46 0.69 16 20 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 21 Si 0.96 41.83 27.47 68.60 1.88 43.72 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 25 H 0.05 1.34 6.72 -2.39 -0.02 1.32 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 1.45 4.52 -2.38 -0.01 1.44 16 28 H 0.03 0.96 6.46 -2.39 -0.02 0.94 16 29 H 0.06 1.58 6.28 -2.38 -0.01 1.56 16 30 H 0.04 1.12 8.04 -2.39 -0.02 1.10 16 31 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.19 7.35 -2.39 -0.02 1.17 16 33 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.09 0.95 5.41 -2.39 -0.01 0.94 16 35 H 0.41 9.56 5.83 -92.71 -0.54 9.02 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.03 1.29 7.20 -2.38 -0.02 1.28 16 39 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -88.34 318.33 -0.10 -88.43 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.45 Total: 13.61 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.10 Total: -12.29 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.07 Total: -97.45 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -2.71 Total: -50.63 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Atomic # 16 Polarization: 15.35 SS G_CDS: -0.75 Total: 14.61 kcal Total: -88.34 -0.10 -88.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408184047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.279 kcal (2) G-P(sol) polarization free energy of solvation -88.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds