Wall clock time and date at job start Tue Mar 31 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00486 * 2 1 4 4 C 1.53235 * 109.34206 * 187.25072 * 3 2 1 5 5 N 1.47086 * 108.52349 * 306.17224 * 4 3 2 6 6 S 1.65597 * 120.88267 * 231.18646 * 5 4 3 7 7 O 1.42102 * 104.27601 * 333.92890 * 6 5 4 8 8 O 1.42104 * 104.27655 * 206.06970 * 6 5 4 9 9 C 1.81398 * 104.44809 * 89.99814 * 6 5 4 10 10 C 1.53003 * 109.46938 * 186.10966 * 9 6 5 11 11 C 1.50701 * 115.55209 * 294.74005 * 10 9 6 12 12 H 1.07998 * 119.99769 * 95.15280 * 11 10 9 13 13 C 1.37874 * 119.99895 * 275.15994 * 11 10 9 14 14 N 1.31513 * 120.00091 * 5.36271 * 13 11 10 15 15 Si 1.86802 * 119.99829 * 185.36924 * 13 11 10 16 16 H 1.48503 * 109.46616 * 269.99304 * 15 13 11 17 17 H 1.48500 * 109.47086 * 29.99134 * 15 13 11 18 18 H 1.48503 * 109.47280 * 149.99873 * 15 13 11 19 19 C 1.53002 * 117.49962 * 80.41312 * 10 9 6 20 20 C 1.52999 * 117.49730 * 149.07072 * 10 9 6 21 21 C 1.47080 * 118.23530 * 51.45648 * 5 4 3 22 22 C 1.46901 * 110.99474 * 124.30414 * 2 1 3 23 23 H 1.09007 * 109.46641 * 59.99856 * 1 2 3 24 24 H 1.08998 * 109.47587 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47209 * 300.00270 * 1 2 3 26 26 H 1.09000 * 109.49035 * 67.29544 * 3 2 1 27 27 H 1.08996 * 109.51671 * 307.22549 * 3 2 1 28 28 H 1.08999 * 109.63272 * 186.46490 * 4 3 2 29 29 H 1.09006 * 109.79020 * 65.97555 * 4 3 2 30 30 H 1.08999 * 109.47378 * 66.10927 * 9 6 5 31 31 H 1.08999 * 109.47107 * 306.10923 * 9 6 5 32 32 H 0.96997 * 119.99863 * 175.00146 * 14 13 11 33 33 H 1.09000 * 117.49832 * 215.00316 * 19 10 9 34 34 H 1.08998 * 117.49731 * 0.02562 * 19 10 9 35 35 H 1.09000 * 117.50341 * 359.97438 * 20 10 9 36 36 H 1.09003 * 117.49620 * 144.99849 * 20 10 9 37 37 H 1.08998 * 109.62901 * 68.25236 * 21 5 4 38 38 H 1.08999 * 109.63009 * 188.83890 * 21 5 4 39 39 H 1.09000 * 109.49431 * 292.69905 * 22 2 1 40 40 H 1.09001 * 109.49348 * 52.78725 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5164 1.3310 -0.1825 5 7 4.0870 0.4458 0.8443 6 16 5.3385 0.9523 1.8032 7 8 5.9997 1.9395 1.0238 8 8 5.9996 -0.2480 2.1795 9 6 4.5302 1.7109 3.2390 10 6 5.5871 2.3584 4.1361 11 6 6.5616 1.4079 4.7828 12 1 7.5184 1.2175 4.3194 13 6 6.2315 0.7814 5.9657 14 7 5.0282 0.9300 6.4751 15 14 7.4936 -0.2786 6.8450 16 1 7.3866 -1.6788 6.3621 17 1 8.8568 0.2392 6.5641 18 1 7.2406 -0.2388 8.3078 19 6 6.1097 3.7378 3.7297 20 6 5.1742 3.5974 4.9331 21 6 3.5204 -0.9034 0.9927 22 6 1.9953 -0.7730 1.1329 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.7556 1.8530 0.9479 27 1 1.5459 1.9341 -0.8180 28 1 3.9257 2.3349 -0.0688 29 1 3.7592 0.9467 -1.1732 30 1 3.9957 0.9455 3.8016 31 1 3.8262 2.4709 2.9002 32 1 4.7721 0.4326 7.2675 33 1 7.1583 3.9577 3.9301 34 1 5.7003 4.1841 2.8236 35 1 4.1498 3.9515 4.8181 36 1 5.6074 3.7250 5.9252 37 1 3.7605 -1.5002 0.1128 38 1 3.9320 -1.3774 1.8837 39 1 1.7554 -0.2614 2.0650 40 1 1.5454 -1.7658 1.1362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408190936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:04 Heat of formation + Delta-G solvation = -57.551882 kcal Electronic energy + Delta-G solvation = -22474.170047 eV Core-core repulsion = 19223.159447 eV Total energy + Delta-G solvation = -3251.010600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.81143 -38.59533 -38.03221 -36.82749 -35.50570 -34.10558 -32.10677 -29.89246 -28.91449 -27.51604 -24.83237 -24.76317 -23.01514 -21.90467 -21.08816 -19.73134 -18.64727 -18.36160 -17.15252 -16.88686 -16.63918 -16.13553 -15.96244 -15.77031 -15.71978 -15.46829 -14.98396 -14.91681 -13.80311 -13.74817 -13.71210 -13.32605 -13.14909 -13.04889 -12.93997 -12.90776 -12.87704 -12.72488 -12.45057 -12.25871 -12.23960 -12.02252 -11.96862 -11.79693 -11.49438 -10.92641 -10.56660 -10.24651 -9.81429 -9.25998 -8.21311 -6.36687 -0.57108 1.37208 1.39795 1.48283 1.88232 2.38085 2.95931 2.99615 3.05700 3.29947 3.38261 3.62287 3.97977 4.03948 4.11791 4.23067 4.27829 4.34863 4.45607 4.49144 4.56623 4.67485 4.70067 4.73461 4.78107 4.80969 4.93429 4.95294 5.06995 5.08350 5.11050 5.18396 5.43287 5.56846 5.64505 5.69096 6.04285 6.12031 6.20034 6.69757 7.35982 8.85804 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.005875 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.400491 B = 4764.466666 C = 5020.196725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.041 3.959 4 C 0.119 3.881 5 N -1.007 6.007 6 S 2.620 3.380 7 O -0.988 6.988 8 O -0.989 6.989 9 C -0.547 4.547 10 C 0.009 3.991 11 C -0.533 4.533 12 H 0.048 0.952 13 C 0.042 3.958 14 N -0.894 5.894 15 Si 0.936 3.064 16 H -0.276 1.276 17 H -0.269 1.269 18 H -0.273 1.273 19 C -0.195 4.195 20 C -0.137 4.137 21 C 0.120 3.880 22 C 0.043 3.957 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.023 0.977 26 H 0.036 0.964 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.265 0.735 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -0.346 -11.797 16.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.089 4.089 4 C -0.006 4.006 5 N -0.846 5.846 6 S 2.719 3.281 7 O -0.979 6.979 8 O -0.980 6.980 9 C -0.680 4.680 10 C 0.006 3.994 11 C -0.571 4.571 12 H 0.066 0.934 13 C -0.161 4.161 14 N -0.530 5.530 15 Si 0.761 3.239 16 H -0.201 1.201 17 H -0.194 1.194 18 H -0.198 1.198 19 C -0.232 4.232 20 C -0.176 4.176 21 C -0.005 4.005 22 C -0.087 4.087 23 H 0.101 0.899 24 H 0.096 0.904 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.145 0.855 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.051 0.949 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.415 -0.705 -12.264 16.105 hybrid contribution -0.094 -0.097 1.970 1.974 sum -10.509 -0.803 -10.295 14.733 Atomic orbital electron populations 1.22431 0.85612 1.02974 1.01220 1.61901 1.08977 1.13575 1.42883 1.22558 0.94409 0.89860 1.02039 1.21697 0.93268 0.93980 0.91696 1.57890 1.54676 1.22889 1.49146 1.04551 0.74448 0.73858 0.75247 1.93448 1.72835 1.63024 1.68550 1.93471 1.72802 1.47050 1.84630 1.29893 1.09914 1.11986 1.16196 1.18435 0.95299 0.87252 0.98369 1.20703 1.01622 1.27181 1.07572 0.93383 1.25527 0.96938 0.96700 0.96913 1.70028 1.19271 1.40786 1.22885 0.85890 0.80324 0.79575 0.78140 1.20133 1.19367 1.19768 1.23244 0.99371 1.01558 0.99075 1.22490 0.97901 1.02600 0.94621 1.21706 0.93315 0.82340 1.03136 1.22588 0.94275 0.99955 0.91878 0.89924 0.90388 0.95822 0.94587 0.87084 0.88857 0.89704 0.86467 0.85519 0.92545 0.89923 0.88232 0.89524 0.91531 0.89591 0.90076 0.94887 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.58 127.69 1.22 1.60 16 2 N -0.55 -10.90 4.88 -920.54 -4.49 -15.39 16 3 C 0.04 0.80 5.62 86.38 0.49 1.29 16 4 C 0.12 2.88 6.46 86.35 0.56 3.44 16 5 N -1.01 -31.01 3.25 -511.31 -1.66 -32.67 16 6 S 2.62 107.24 5.15 -56.49 -0.29 106.95 16 7 O -0.99 -42.94 16.79 -127.65 -2.14 -45.09 16 8 O -0.99 -48.35 16.45 -127.65 -2.10 -50.45 16 9 C -0.55 -22.80 6.03 71.98 0.43 -22.37 16 10 C 0.01 0.42 1.33 -52.93 -0.07 0.35 16 11 C -0.53 -29.80 8.19 25.60 0.21 -29.59 16 12 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 13 C 0.04 2.31 5.40 84.65 0.46 2.77 16 14 N -0.89 -49.41 12.91 21.45 0.28 -49.13 16 15 Si 0.94 44.19 29.54 68.60 2.03 46.22 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 C -0.20 -8.42 9.96 30.62 0.30 -8.12 16 20 C -0.14 -6.18 9.42 30.62 0.29 -5.89 16 21 C 0.12 3.29 6.50 86.51 0.56 3.86 16 22 C 0.04 0.94 5.64 86.54 0.49 1.43 16 23 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 25 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.11 1.59 8.11 -2.39 -0.02 1.57 16 28 H 0.09 2.23 7.19 -2.39 -0.02 2.21 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.12 5.19 8.14 -2.39 -0.02 5.17 16 31 H 0.13 4.32 8.09 -2.39 -0.02 4.30 16 32 H 0.27 13.92 8.32 -92.71 -0.77 13.15 16 33 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.10 3.75 8.14 -2.39 -0.02 3.74 16 35 H 0.09 3.47 8.14 -2.39 -0.02 3.46 16 36 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.46 7.18 -2.39 -0.02 2.44 16 39 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.11 1.87 8.06 -2.39 -0.02 1.85 16 Total: -1.00 -68.79 336.84 -2.45 -71.23 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 1.00 Total: 19.56 kcal Atomic # 6 Polarization: -56.17 SS G_CDS: 4.94 Total: -51.23 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -5.88 Total: -97.20 kcal Atomic # 8 Polarization: -91.29 SS G_CDS: -4.24 Total: -95.53 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 107.24 SS G_CDS: -0.29 Total: 106.95 kcal Total: -68.79 -2.45 -71.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408190936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.681 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds