Wall clock time and date at job start Tue Mar 31 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99920 * 2 1 4 4 C 1.50702 * 109.47263 * 274.99967 * 3 2 1 5 5 H 1.07999 * 120.00213 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00240 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99814 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00364 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47163 * 90.00281 * 8 6 4 10 10 H 1.48501 * 109.47373 * 209.99854 * 8 6 4 11 11 H 1.48498 * 109.47169 * 330.00334 * 8 6 4 12 12 S 1.65604 * 119.99880 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40100 * 156.45875 * 12 2 1 14 14 O 1.42095 * 106.40049 * 23.53481 * 12 2 1 15 15 N 1.65600 * 107.21131 * 269.99704 * 12 2 1 16 16 C 1.46496 * 120.00374 * 65.00569 * 15 12 2 17 17 H 1.09004 * 109.26292 * 25.48727 * 16 15 12 18 18 C 1.52873 * 109.26718 * 266.02517 * 16 15 12 19 19 C 1.53296 * 108.59513 * 184.84425 * 18 16 15 20 20 C 1.53779 * 107.93656 * 75.06522 * 19 18 16 21 21 C 1.52711 * 109.67227 * 304.03856 * 20 19 18 22 22 H 1.09002 * 115.39007 * 233.01561 * 21 20 19 23 23 C 1.53648 * 115.14916 * 91.61094 * 21 20 19 24 24 C 1.52065 * 120.52264 * 23.27218 * 21 20 19 25 25 H 1.08998 * 115.93570 * 208.89174 * 24 21 20 26 26 H 1.08996 * 109.47178 * 269.99641 * 1 2 3 27 27 H 1.09004 * 109.47111 * 30.00141 * 1 2 3 28 28 H 1.09003 * 109.47002 * 149.99570 * 1 2 3 29 29 H 1.09002 * 109.47450 * 35.00199 * 3 2 1 30 30 H 1.08998 * 109.47021 * 155.00027 * 3 2 1 31 31 H 0.97006 * 119.99687 * 179.97438 * 7 6 4 32 32 H 0.97008 * 119.99852 * 244.99875 * 15 12 2 33 33 H 1.09005 * 109.61310 * 304.57438 * 18 16 15 34 34 H 1.09000 * 109.61874 * 65.10854 * 18 16 15 35 35 H 1.08996 * 109.62009 * 194.17010 * 19 18 16 36 36 H 1.09013 * 109.61394 * 314.52987 * 19 18 16 37 37 H 1.09000 * 109.44834 * 184.07301 * 20 19 18 38 38 H 1.09006 * 109.75359 * 64.19435 * 20 19 18 39 39 H 1.09008 * 117.53944 * 355.30507 * 23 21 20 40 40 H 1.08996 * 117.53888 * 140.54991 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2332 6 6 2.9997 2.9508 -1.6664 7 7 3.5015 3.6479 -0.6704 8 14 3.1775 3.5673 -3.4207 9 1 2.0165 4.4276 -3.7632 10 1 4.4305 4.3547 -3.5442 11 1 3.2267 2.4097 -4.3495 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4063 -0.5454 15 7 2.5381 -1.8592 1.5810 16 6 1.3947 -2.1788 2.4393 17 1 0.5663 -2.5244 1.8208 18 6 0.9668 -0.9225 3.1980 19 6 -0.1487 -1.3002 4.1793 20 6 0.4926 -2.0465 5.3610 21 6 1.2795 -3.2487 4.8437 22 1 1.0308 -4.2040 5.3060 23 6 2.7619 -2.9788 4.5435 24 6 1.7889 -3.2799 3.4112 25 1 1.8885 -4.2681 2.9621 26 1 -0.3633 -0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6501 2.0043 0.5895 30 1 3.1857 1.1177 0.4343 31 1 3.9650 4.4816 -0.8470 32 1 3.4388 -1.8967 1.9392 33 1 1.8173 -0.5198 3.7482 34 1 0.5975 -0.1773 2.4934 35 1 -0.6373 -0.3965 4.5435 36 1 -0.8794 -1.9339 3.6764 37 1 -0.2878 -2.3905 6.0397 38 1 1.1660 -1.3777 5.8973 39 1 3.1177 -1.9532 4.6428 40 1 3.4796 -3.7543 4.8109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416559597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:06 Heat of formation + Delta-G solvation = -84.790377 kcal Electronic energy + Delta-G solvation = -22308.177979 eV Core-core repulsion = 19055.986229 eV Total energy + Delta-G solvation = -3252.191750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69671 -38.26983 -37.23489 -36.85332 -35.55022 -34.50499 -33.70264 -29.81022 -29.55395 -26.76572 -25.36084 -24.20161 -23.46967 -22.00929 -20.45992 -19.69764 -18.91768 -18.37624 -18.11724 -17.51724 -17.05639 -16.56064 -16.02437 -15.29601 -15.05927 -15.02794 -14.74046 -14.31319 -14.08785 -13.98446 -13.81250 -13.33840 -13.20829 -13.13845 -13.04942 -12.91783 -12.80581 -12.60213 -12.46845 -12.36883 -12.02095 -11.93526 -11.85102 -11.73922 -11.29320 -10.89770 -10.61363 -10.59413 -10.35208 -9.76687 -8.20212 -6.31787 -0.30360 1.38613 1.41042 1.51602 2.02602 2.40391 2.61529 2.91522 3.10882 3.46514 3.67495 3.73778 3.95950 4.03913 4.08594 4.20938 4.27630 4.36008 4.54217 4.64656 4.70306 4.76364 4.80359 4.88373 4.98339 5.05810 5.14568 5.16767 5.21760 5.24548 5.35818 5.39594 5.44802 5.48877 5.57238 5.70449 5.87745 6.10177 6.18016 6.76613 7.37089 8.87227 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026234 B = 0.004914 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.057747 B = 5697.144189 C = 5998.380137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.999 5.999 3 C 0.276 3.724 4 C -0.550 4.550 5 H 0.051 0.949 6 C 0.013 3.987 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.279 1.279 11 H -0.276 1.276 12 S 2.797 3.203 13 O -1.014 7.014 14 O -1.011 7.011 15 N -1.114 6.114 16 C 0.181 3.819 17 H 0.087 0.913 18 C -0.150 4.150 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.125 4.125 22 H 0.121 0.879 23 C -0.181 4.181 24 C -0.158 4.158 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.015 0.985 31 H 0.267 0.733 32 H 0.419 0.581 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -11.825 14.103 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.841 5.841 3 C 0.152 3.848 4 C -0.589 4.589 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.201 1.201 12 S 2.805 3.195 13 O -0.998 6.998 14 O -0.994 6.994 15 N -0.875 5.875 16 C 0.075 3.925 17 H 0.105 0.895 18 C -0.189 4.189 19 C -0.152 4.152 20 C -0.128 4.128 21 C -0.144 4.144 22 H 0.139 0.861 23 C -0.218 4.218 24 C -0.178 4.178 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.254 0.746 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.330 -12.145 13.275 19.429 hybrid contribution 0.844 0.778 -0.696 1.342 sum -6.486 -11.368 12.579 18.153 Atomic orbital electron populations 1.21664 0.78271 1.03594 1.02519 1.57426 1.15550 1.21806 1.89314 1.18559 0.90319 0.80189 0.95705 1.21855 1.36170 1.06580 0.94292 0.93115 1.25721 0.94804 0.96773 1.01361 1.70010 1.37949 1.15697 1.32724 0.85596 0.78139 0.78272 0.79946 1.18991 1.20386 1.20064 1.01188 0.72049 0.72573 0.73643 1.93567 1.43025 1.85476 1.77727 1.93494 1.67748 1.60254 1.77941 1.55928 1.15807 1.85121 1.30598 1.20191 0.86809 0.94374 0.91160 0.89466 1.22322 1.00036 0.97096 0.99426 1.21726 0.96830 1.00940 0.95694 1.21297 0.99300 0.95017 0.97180 1.22366 0.95653 1.00942 0.95413 0.86118 1.23206 0.93285 1.02975 1.02370 1.21924 1.06257 0.99273 0.90336 0.87756 0.90699 0.91018 0.90802 0.95228 0.96735 0.92399 0.74621 0.91441 0.91400 0.90651 0.90721 0.89755 0.91437 0.88982 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.79 10.41 127.77 1.33 4.12 16 2 N -1.00 -41.05 2.96 -543.23 -1.61 -42.65 16 3 C 0.28 13.98 5.08 85.63 0.43 14.41 16 4 C -0.55 -31.38 9.38 25.60 0.24 -31.14 16 5 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 6 C 0.01 0.73 5.46 84.65 0.46 1.20 16 7 N -0.92 -54.38 13.29 21.45 0.28 -54.10 16 8 Si 0.96 45.01 29.54 68.60 2.03 47.03 16 9 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 S 2.80 112.11 6.08 -56.49 -0.34 111.76 16 13 O -1.01 -50.35 17.11 -128.00 -2.19 -52.54 16 14 O -1.01 -42.02 16.07 -128.00 -2.06 -44.08 16 15 N -1.11 -33.05 5.51 -170.85 -0.94 -33.99 16 16 C 0.18 4.36 2.86 44.64 0.13 4.49 16 17 H 0.09 2.18 7.49 -2.38 -0.02 2.16 16 18 C -0.15 -3.34 5.29 30.65 0.16 -3.18 16 19 C -0.11 -1.87 5.98 30.96 0.19 -1.68 16 20 C -0.09 -1.26 5.84 30.76 0.18 -1.08 16 21 C -0.12 -1.86 6.22 -10.98 -0.07 -1.92 16 22 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 23 C -0.18 -3.06 9.60 30.58 0.29 -2.76 16 24 C -0.16 -3.06 5.51 -11.64 -0.06 -3.13 16 25 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.07 1.95 5.95 -2.39 -0.01 1.93 16 27 H 0.07 2.44 8.07 -2.38 -0.02 2.42 16 28 H 0.07 2.31 7.02 -2.39 -0.02 2.29 16 29 H 0.03 1.51 8.11 -2.39 -0.02 1.49 16 30 H 0.01 0.80 7.61 -2.39 -0.02 0.78 16 31 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 32 H 0.42 11.33 8.83 -96.74 -0.85 10.48 16 33 H 0.07 1.56 7.08 -2.38 -0.02 1.54 16 34 H 0.07 1.70 5.28 -2.39 -0.01 1.69 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 1.15 8.05 -2.38 -0.02 1.13 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.96 8.02 -2.38 -0.02 0.94 16 39 H 0.09 1.68 7.26 -2.38 -0.02 1.67 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.00 329.10 -1.36 -72.36 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.19 Total: 16.89 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 3.28 Total: -20.67 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -2.26 Total: -130.74 kcal Atomic # 8 Polarization: -92.38 SS G_CDS: -4.25 Total: -96.63 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 112.11 SS G_CDS: -0.34 Total: 111.76 kcal Total: -71.00 -1.36 -72.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416559597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.433 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds