Wall clock time and date at job start Tue Mar 31 2020 02:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99972 * 2 1 4 4 C 1.50694 * 109.47115 * 275.00101 * 3 2 1 5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 3 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 S 1.65601 * 119.99689 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40391 * 23.53795 * 12 2 1 14 14 O 1.42104 * 106.39868 * 156.45798 * 12 2 1 15 15 N 1.65595 * 107.22002 * 269.99806 * 12 2 1 16 16 C 1.49299 * 127.10479 * 269.68992 * 15 12 2 17 17 C 1.56323 * 106.46136 * 171.20138 * 16 15 12 18 18 C 1.52128 * 100.91433 * 336.92589 * 17 16 15 19 19 H 1.09000 * 111.08816 * 285.81537 * 18 17 16 20 20 C 1.51228 * 122.54661 * 151.13744 * 18 17 16 21 21 C 1.55693 * 104.60753 * 218.56139 * 20 18 17 22 22 C 1.55469 * 106.00209 * 7.56707 * 21 20 18 23 23 C 1.42708 * 127.10435 * 89.99975 * 15 12 2 24 24 H 1.08994 * 108.16978 * 103.46834 * 23 15 12 25 25 H 1.09004 * 109.47495 * 89.99963 * 1 2 3 26 26 H 1.09001 * 109.46919 * 209.99630 * 1 2 3 27 27 H 1.09001 * 109.47244 * 330.00033 * 1 2 3 28 28 H 1.08998 * 109.46734 * 155.00217 * 3 2 1 29 29 H 1.09002 * 109.47081 * 34.99989 * 3 2 1 30 30 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 31 31 H 1.08996 * 110.04889 * 290.60257 * 16 15 12 32 32 H 1.09004 * 110.04401 * 52.07136 * 16 15 12 33 33 H 1.09003 * 111.29167 * 218.91875 * 17 16 15 34 34 H 1.09003 * 110.94723 * 94.78590 * 17 16 15 35 35 H 1.08997 * 110.40797 * 337.34422 * 20 18 17 36 36 H 1.09001 * 110.40684 * 99.66150 * 20 18 17 37 37 H 1.08998 * 110.15896 * 126.36886 * 21 20 18 38 38 H 1.09008 * 110.15318 * 248.13685 * 21 20 18 39 39 H 1.08997 * 110.39047 * 265.71517 * 22 21 20 40 40 H 1.08997 * 111.18873 * 142.21115 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4153 5 1 1.9282 1.1939 -2.2331 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6475 -0.6704 8 14 3.1848 3.5631 -3.4214 9 1 2.5415 2.6008 -4.3517 10 1 2.5325 4.8905 -3.5540 11 1 4.6270 3.6848 -3.7536 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8594 1.5809 16 6 3.7057 -1.5008 2.4394 17 6 3.3423 -1.9503 3.8918 18 6 1.8230 -1.9690 3.8159 19 1 1.4179 -0.9571 3.8148 20 6 0.9773 -2.8921 4.6643 21 6 -0.1759 -3.3452 3.7215 22 6 0.1852 -2.8013 2.3106 23 6 1.6799 -2.6495 2.4029 24 1 2.1109 -3.6474 2.4839 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 3.1858 1.1176 0.4343 29 1 1.6501 2.0043 0.5895 30 1 3.9653 4.4815 -0.8470 31 1 4.5974 -2.0248 2.0955 32 1 3.8715 -0.4237 2.4137 33 1 3.6904 -1.2267 4.6289 34 1 3.7378 -2.9439 4.1027 35 1 1.5626 -3.7522 4.9894 36 1 0.5782 -2.3571 5.5260 37 1 -0.2339 -4.4334 3.6952 38 1 -1.1237 -2.9259 4.0591 39 1 -0.2951 -1.8376 2.1407 40 1 -0.0873 -3.5138 1.5320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494379872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:35 Heat of formation + Delta-G solvation = -64.816303 kcal Electronic energy + Delta-G solvation = -22646.584960 eV Core-core repulsion = 19395.259351 eV Total energy + Delta-G solvation = -3251.325609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16814 -36.59414 -35.47215 -35.11718 -34.79054 -32.42761 -31.29914 -27.80652 -27.33821 -26.88612 -25.03537 -22.37674 -21.84319 -21.19195 -20.08584 -18.09155 -17.26193 -16.64263 -16.38491 -16.22729 -15.23835 -14.90788 -14.50990 -14.40606 -13.91598 -13.52733 -13.15326 -13.09003 -12.70385 -12.51279 -12.29177 -12.11366 -11.95426 -11.61572 -11.45325 -11.33351 -11.26259 -11.15685 -11.09284 -10.75718 -10.70808 -10.66187 -10.51746 -10.49699 -10.16655 -9.99361 -9.73671 -8.72427 -8.43314 -8.03545 -6.05986 -4.09555 1.18391 3.31633 3.39102 3.41072 3.45574 3.94896 4.30589 4.45996 4.53618 4.65395 4.84663 5.00177 5.09825 5.18414 5.26511 5.31268 5.37249 5.46238 5.51608 5.60685 5.70301 5.76087 5.83885 5.89565 5.92261 6.02555 6.07022 6.11581 6.22103 6.32627 6.38161 6.41066 6.58394 6.79521 7.22080 7.40795 7.61921 7.91905 8.21363 8.93033 9.55617 11.02736 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.005322 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.564705 B = 5259.700329 C = 5456.918039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.996 5.996 3 C 0.258 3.742 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.790 3.210 13 O -0.989 6.989 14 O -0.960 6.960 15 N -1.006 6.006 16 C 0.126 3.874 17 C -0.114 4.114 18 C -0.124 4.124 19 H 0.086 0.914 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.126 4.126 23 C 0.132 3.868 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 -11.776 12.644 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.839 5.839 3 C 0.136 3.864 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.800 3.200 13 O -0.974 6.974 14 O -0.944 6.944 15 N -0.842 5.842 16 C 0.002 3.998 17 C -0.152 4.152 18 C -0.145 4.145 19 H 0.104 0.896 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.165 4.165 23 C 0.023 3.977 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.848 -12.072 11.792 17.558 hybrid contribution 0.040 0.790 -0.685 1.047 sum -4.808 -11.281 11.107 16.545 Atomic orbital electron populations 1.21265 0.80205 1.01080 1.01445 1.57729 1.14232 1.23479 1.88423 1.19059 0.90911 0.78742 0.97695 1.21532 1.35897 1.06249 0.92963 0.92166 1.24933 0.95096 0.96493 0.97516 1.69928 1.37502 1.15292 1.30879 0.86454 0.78013 0.78476 0.84598 1.19633 1.20953 1.20763 1.01746 0.73462 0.72721 0.72107 1.93528 1.67348 1.60488 1.76005 1.93617 1.40638 1.84906 1.75237 1.58683 1.29494 1.65804 1.30261 1.22539 0.87560 1.00933 0.88804 1.22254 0.95134 1.01995 0.95837 1.22621 0.95263 1.00236 0.96334 0.89552 1.21639 0.96525 0.98893 0.97574 1.22656 0.98477 1.00773 0.93447 1.21943 0.93821 1.02635 0.98069 1.20820 0.92292 0.94752 0.89800 0.92300 0.93142 0.92941 0.91568 0.94619 0.94797 0.92758 0.91027 0.90560 0.90285 0.90792 0.91503 0.91499 0.91429 0.91200 0.90780 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.90 10.33 59.85 0.62 2.52 16 2 N -1.00 -21.41 3.23 -123.05 -0.40 -21.81 16 3 C 0.26 6.58 5.12 -5.20 -0.03 6.55 16 4 C -0.53 -15.09 9.38 -34.44 -0.32 -15.41 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 S 2.79 58.61 6.30 -107.50 -0.68 57.93 16 13 O -0.99 -21.39 16.52 -57.17 -0.94 -22.33 16 14 O -0.96 -23.96 16.78 -57.17 -0.96 -24.92 16 15 N -1.01 -16.51 3.65 -104.46 -0.38 -16.89 16 16 C 0.13 1.78 7.22 -0.70 -0.01 1.78 16 17 C -0.11 -1.19 6.71 -25.39 -0.17 -1.36 16 18 C -0.12 -1.36 3.19 -89.51 -0.29 -1.65 16 19 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.11 -0.94 6.59 -26.19 -0.17 -1.11 16 21 C -0.12 -1.03 6.91 -23.98 -0.17 -1.19 16 22 C -0.13 -1.52 6.16 -26.66 -0.16 -1.68 16 23 C 0.13 1.77 2.74 -68.72 -0.19 1.58 16 24 H 0.06 0.76 7.98 -51.93 -0.41 0.34 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.79 5.72 -51.93 -0.30 0.50 16 27 H 0.07 1.08 7.94 -51.93 -0.41 0.67 16 28 H 0.04 0.96 7.61 -51.93 -0.40 0.57 16 29 H 0.03 0.87 7.96 -51.93 -0.41 0.46 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.07 0.90 6.31 -51.93 -0.33 0.57 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 329.63 15.07 4.97 4.97 Total: -1.00 -33.56 329.63 -10.11 -43.68 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.46 Total: -3.82 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.98 Total: -8.31 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.04 Total: -64.29 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -1.90 Total: -47.25 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 58.61 SS G_CDS: -0.68 Total: 57.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.56 -10.11 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494379872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.140 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds