Wall clock time and date at job start Tue Mar 31 2020 02:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99972 * 2 1 4 4 C 1.50694 * 109.47115 * 275.00101 * 3 2 1 5 5 H 1.08000 * 120.00563 * 0.02562 * 4 3 2 6 6 C 1.37885 * 119.99902 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99854 * 179.72538 * 6 4 3 9 9 H 1.48504 * 109.47032 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46816 * 120.00323 * 8 6 4 11 11 H 1.48495 * 109.46630 * 240.00111 * 8 6 4 12 12 S 1.65601 * 119.99689 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40391 * 23.53795 * 12 2 1 14 14 O 1.42104 * 106.39868 * 156.45798 * 12 2 1 15 15 N 1.65595 * 107.22002 * 269.99806 * 12 2 1 16 16 C 1.49299 * 127.10479 * 269.68992 * 15 12 2 17 17 C 1.56323 * 106.46136 * 171.20138 * 16 15 12 18 18 C 1.52128 * 100.91433 * 336.92589 * 17 16 15 19 19 H 1.09000 * 111.08816 * 285.81537 * 18 17 16 20 20 C 1.51228 * 122.54661 * 151.13744 * 18 17 16 21 21 C 1.55693 * 104.60753 * 218.56139 * 20 18 17 22 22 C 1.55469 * 106.00209 * 7.56707 * 21 20 18 23 23 C 1.42708 * 127.10435 * 89.99975 * 15 12 2 24 24 H 1.08994 * 108.16978 * 103.46834 * 23 15 12 25 25 H 1.09004 * 109.47495 * 89.99963 * 1 2 3 26 26 H 1.09001 * 109.46919 * 209.99630 * 1 2 3 27 27 H 1.09001 * 109.47244 * 330.00033 * 1 2 3 28 28 H 1.08998 * 109.46734 * 155.00217 * 3 2 1 29 29 H 1.09002 * 109.47081 * 34.99989 * 3 2 1 30 30 H 0.97001 * 119.99646 * 180.02562 * 7 6 4 31 31 H 1.08996 * 110.04889 * 290.60257 * 16 15 12 32 32 H 1.09004 * 110.04401 * 52.07136 * 16 15 12 33 33 H 1.09003 * 111.29167 * 218.91875 * 17 16 15 34 34 H 1.09003 * 110.94723 * 94.78590 * 17 16 15 35 35 H 1.08997 * 110.40797 * 337.34422 * 20 18 17 36 36 H 1.09001 * 110.40684 * 99.66150 * 20 18 17 37 37 H 1.08998 * 110.15896 * 126.36886 * 21 20 18 38 38 H 1.09008 * 110.15318 * 248.13685 * 21 20 18 39 39 H 1.08997 * 110.39047 * 265.71517 * 22 21 20 40 40 H 1.08997 * 111.18873 * 142.21115 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7656 -1.4153 5 1 1.9282 1.1939 -2.2331 6 6 2.9997 2.9509 -1.6663 7 7 3.5025 3.6475 -0.6704 8 14 3.1848 3.5631 -3.4214 9 1 2.5415 2.6008 -4.3517 10 1 2.5325 4.8905 -3.5540 11 1 4.6270 3.6848 -3.7536 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5455 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8594 1.5809 16 6 3.7057 -1.5008 2.4394 17 6 3.3423 -1.9503 3.8918 18 6 1.8230 -1.9690 3.8159 19 1 1.4179 -0.9571 3.8148 20 6 0.9773 -2.8921 4.6643 21 6 -0.1759 -3.3452 3.7215 22 6 0.1852 -2.8013 2.3106 23 6 1.6799 -2.6495 2.4029 24 1 2.1109 -3.6474 2.4839 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 3.1858 1.1176 0.4343 29 1 1.6501 2.0043 0.5895 30 1 3.9653 4.4815 -0.8470 31 1 4.5974 -2.0248 2.0955 32 1 3.8715 -0.4237 2.4137 33 1 3.6904 -1.2267 4.6289 34 1 3.7378 -2.9439 4.1027 35 1 1.5626 -3.7522 4.9894 36 1 0.5782 -2.3571 5.5260 37 1 -0.2339 -4.4334 3.6952 38 1 -1.1237 -2.9259 4.0591 39 1 -0.2951 -1.8376 2.1407 40 1 -0.0873 -3.5138 1.5320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494379872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:34 Heat of formation + Delta-G solvation = -88.262921 kcal Electronic energy + Delta-G solvation = -22647.601682 eV Core-core repulsion = 19395.259351 eV Total energy + Delta-G solvation = -3252.342331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.14123 -38.35578 -37.27540 -36.90800 -35.78616 -34.55017 -32.31075 -29.73556 -28.28867 -27.83151 -26.81673 -24.29623 -23.02900 -22.17669 -20.91452 -19.64807 -18.86649 -18.52609 -17.92450 -17.65134 -16.92603 -16.28475 -15.77216 -15.55079 -15.31778 -15.13951 -14.68332 -14.22393 -14.10658 -13.99764 -13.68944 -13.46613 -13.25450 -13.15821 -13.11288 -13.01277 -12.88802 -12.65710 -12.51620 -12.45034 -12.11289 -11.96832 -11.78140 -11.67744 -11.53270 -11.25743 -11.10347 -10.63544 -9.97357 -9.81661 -8.24210 -6.36352 -0.44869 1.35903 1.38445 1.50340 1.94899 2.36714 2.50856 3.06279 3.10126 3.25135 3.75315 3.80316 3.99102 4.06025 4.19885 4.29464 4.42517 4.50646 4.55846 4.61178 4.64476 4.71691 4.80107 4.86627 4.96060 5.02377 5.05498 5.11035 5.17968 5.23663 5.25941 5.30157 5.37846 5.41349 5.59074 5.64591 5.70020 5.90957 6.06323 6.71385 7.32640 8.83769 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026671 B = 0.005322 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.564705 B = 5259.700329 C = 5456.918039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.003 6.003 3 C 0.274 3.726 4 C -0.552 4.552 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.267 1.267 11 H -0.277 1.277 12 S 2.801 3.199 13 O -1.000 7.000 14 O -1.008 7.008 15 N -1.004 6.004 16 C 0.113 3.887 17 C -0.100 4.100 18 C -0.113 4.113 19 H 0.074 0.926 20 C -0.102 4.102 21 C -0.108 4.108 22 C -0.134 4.134 23 C 0.109 3.891 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.014 0.986 29 H 0.029 0.971 30 H 0.269 0.731 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.051 -12.556 14.213 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.845 5.845 3 C 0.151 3.849 4 C -0.591 4.591 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.192 1.192 11 H -0.203 1.203 12 S 2.812 3.188 13 O -0.984 6.984 14 O -0.992 6.992 15 N -0.843 5.843 16 C -0.011 4.011 17 C -0.139 4.139 18 C -0.134 4.134 19 H 0.092 0.908 20 C -0.140 4.140 21 C -0.146 4.146 22 C -0.172 4.172 23 C 0.001 3.999 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.683 -12.859 13.357 19.392 hybrid contribution 0.283 0.975 -1.123 1.515 sum -5.400 -11.883 12.234 17.890 Atomic orbital electron populations 1.21488 0.78171 1.03149 1.01777 1.57637 1.15654 1.22153 1.89014 1.18619 0.90247 0.80100 0.95971 1.21837 1.36427 1.06747 0.94068 0.93320 1.25746 0.94622 0.96629 1.01614 1.70008 1.37787 1.15722 1.32748 0.85520 0.78155 0.78460 0.79666 1.19632 1.19164 1.20286 1.01083 0.72334 0.72404 0.73001 1.93499 1.67331 1.60434 1.77171 1.93546 1.42883 1.85528 1.77285 1.58267 1.31046 1.65750 1.29283 1.22824 0.87027 1.00192 0.91095 1.22262 0.94870 1.03596 0.93137 1.22635 0.95807 0.99991 0.94963 0.90764 1.21652 0.95946 0.98952 0.97406 1.22650 0.99230 1.01576 0.91135 1.22047 0.92797 1.02276 1.00093 1.21260 0.92982 0.95006 0.90643 0.91307 0.93701 0.90232 0.90180 0.96826 0.95313 0.92240 0.90862 0.92253 0.88452 0.88606 0.89913 0.89885 0.90097 0.89829 0.91371 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.54 10.33 127.77 1.32 4.86 16 2 N -1.00 -44.16 3.23 -543.22 -1.75 -45.91 16 3 C 0.27 14.45 5.12 85.63 0.44 14.89 16 4 C -0.55 -32.36 9.38 25.60 0.24 -32.12 16 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 6 C 0.01 0.78 5.46 84.66 0.46 1.24 16 7 N -0.92 -54.81 13.29 21.45 0.28 -54.52 16 8 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 9 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 S 2.80 120.77 6.30 -56.49 -0.36 120.41 16 13 O -1.00 -43.80 16.52 -128.00 -2.11 -45.91 16 14 O -1.01 -52.51 16.78 -128.00 -2.15 -54.65 16 15 N -1.00 -32.99 3.65 -484.41 -1.77 -34.76 16 16 C 0.11 3.17 7.22 86.99 0.63 3.80 16 17 C -0.10 -1.85 6.71 31.46 0.21 -1.64 16 18 C -0.11 -2.21 3.19 -10.07 -0.03 -2.24 16 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 20 C -0.10 -1.36 6.59 30.95 0.20 -1.16 16 21 C -0.11 -1.56 6.91 32.37 0.22 -1.34 16 22 C -0.13 -3.00 6.16 30.64 0.19 -2.81 16 23 C 0.11 2.76 2.74 46.47 0.13 2.89 16 24 H 0.07 1.63 7.98 -2.39 -0.02 1.61 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.08 2.37 5.72 -2.39 -0.01 2.35 16 27 H 0.08 2.60 7.94 -2.39 -0.02 2.58 16 28 H 0.01 0.78 7.61 -2.39 -0.02 0.76 16 29 H 0.03 1.52 7.96 -2.39 -0.02 1.51 16 30 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.07 1.57 6.31 -2.39 -0.02 1.56 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -73.49 329.63 -0.81 -74.30 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.01 Total: 7.10 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.01 Total: -13.62 kcal Atomic # 7 Polarization: -131.95 SS G_CDS: -3.24 Total: -135.19 kcal Atomic # 8 Polarization: -96.30 SS G_CDS: -4.26 Total: -100.57 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 120.77 SS G_CDS: -0.36 Total: 120.41 kcal Total: -73.49 -0.81 -74.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494379872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.966 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds